Tan0003393.1 (mRNA) Snake gourd v1

Overview
NameTan0003393.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEF-hand domain-containing protein
LocationLG10: 36252564 .. 36256511 (+)
Sequence length949
RNA-Seq ExpressionTan0003393.1
SyntenyTan0003393.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGATTTTAAAACCCGTCGGTTAAACTTTAATCCTCGTTCTCCCCTTCCATTTCGTTTTTCCCTCCCTAGCCCTAGTCATGGATGTTTTATCCTTCTTCTCCCGTTGCCAATCACGTCGCCCACATCCTCCTCCGTCTGTTGCGATTGCCTCCCCTAATTCTCGTACATCTTCTTCTTCTTCTTCTTCTTTTCTGACGGGGAACTATGCAAATCCAATCAAATCAAATGGACAAAATTCATTCAATCAATGATTTCTCTAATCTTTTTCAACATCCAGATAAGGAAGAGTACACCCCCTCTCTTTCAATTTCTCATGTGTTCATCCGCTCTAATTCTGATTACTTTCTCTTCTTTGTTGCAGTATAATGAAATCCTCGACAAAGGAGTTTCCAATACACAGTACGAACAAATTTAGCCTCTCCTTCGTCTCCTTTGCATTTTTGTAATTAGCATCGATTCTATCGAACATGCCTTTTTCGACTTTCAGGTATTTCTTGCATATACAATCTTTACTCTTTAGTTCTCTTGTTCTATCGATCTTTCTTTAGCACGAACTATCTCCAACTTCAATAAATAGTATTCGACTTAATCGATGAGATTTTCGCACTTGTTGAACTGCTATTGTCAAGTGGTTGGCCAATTTATTATTACAAACTGAAAATTGTTGTGGATTGGAAAACTTTGTTGTTTTTATAATCATATAATCTCGGTTGGCTTATGCACTGCAACCAGTTTAGAAGTTTTTGACTATAGTATTTATCAGAGACTTTTTTTAACAAAAATTATTACATAGTTAGATATGTTACTGTGAGACAAAGGCAAGACGAGTTTGCATTATGGACGGATACGACAATTGGTGAGCCTCTCAGGTCCTTTCATTTTCTATTTGTTGATTGAAAGCATGTAATGTGGGTGTGTTAGGTTGATAGATGAACTAACTTAATTTATCCCCTGCACCATAAGATATAGAGTATACAAATCCACCTCATATATTTTCTTTGTCTTGAGTGATTTTTGGATCGCTGAAGTTTATGTACTGTTGTGATCAAATAGATAATTCTTTTGTGAATCTCTAGATAATTCTTTTCTTTTTATTTCTTTCTTCCTGCTGCTAGTAGGTTATATGAGATGTTGTTTAGAAGGTTAGCTAATGAGCAGATGTTCTATTTCTAGGAATATCATTCCTTTTTTATTTGTCTCTCTCTTTGTAAAAGGCCACATTTACCCTACAATATTTTGATAGTTGGAAGTTTATGTAGGTTTCTTAGGTCGTTCTGTGTCCATAGTGTTGAACCTTTTGTGTTGACCATTCAGGAAATCTTCAAGGGGAAGATATGGTCTTTTATTATGATTATGTGGTTCTCAGCTCCATCTGAAGTTTTAATTGCTTCTATTGGTCATTTGTCCTCTTGATTACCTAACTGGTTAGACAGTCTTCAGCCTAAGTTCACCACATAGATGATTAGTTTTACTTGGGTTTTAATGAATTGGCAGCAATGATTTAGAAGTCACAAATCTAGTGCCATTATGCATGACAACTTAGTTTACTGGTTCTTTTTTCCAAATTGTAAACACTACTTGAACTCTCTTGTGGAGCAGAGAGAGGATGATTGTTTGGAGATAAAATTTTGAATTGTCTTGAGGAGAGAGAATGATTGGGAGAATCAGAAAAATAAATATAAAAATAATAACTGCAATGTAAATCTTTTAAAATACAATTTAGATACAATTTAAATAAAATATTTCTTGATATTCTAACAGATGGGCCTTTTAGAACTAAAACTACACACTGTTTTGTATTTTCTAAAAGTTAGATTTTTTTTGTTCTTCTAAAATATATATATATCCTCTTTAATATATTTGGTAAGAACATCTTTATCAAGATCTTGTAGTTCCTTATTCTCTCGTTAGAAACTTTTCGAAACTTTCTATAATTTTGGTTTATTTCCTTGATCCTTTTTAGCTTCTTTCATTGTTCTCAACCATTGAATGCACATTTTATCTTTTCCTAAATAAATAACCTTGGGGCGAGAGTTTCTTTTCTGCAATTTTTTTGATAGGAAAGAATCATAAAGACAAGTTTTATAAGTTAAATGGATGAATAAGTAATATCATATTTTGTTGCTCTATCAAATGTCATACACAATGTTTAATCTCCGTGTCAAGAGAAACTTGAGAGTAAGATTTTCTCTGCACTCCTTTTATTTATTACCTTACCTTTATAGATCCTTCATTTAAAGTGAAAATAGGCTCAGATAACATTTCCGGAGGGTAATTGGGCTTTTTCAGATACTTCAAGAGGCTTTGAACTCTCTTGAAACTAGTCCCAAAACTTTTCAACCACAAACCTTAACTAAATCTATTTATAACCACTCGACTATAGCAAATGGACTTTTGTAGTTACAAATATATCACTGTAGTTACGAAATATAATCTAACCTAAGTTCAGTTCAATTCAGTTAGGTAGATATTCCATTAACTCATTTTATACACACAAGCTGTCTCTCAAACCAGTTCATTTAATCCAGAATGTAAACATAAATGTAGATGTGTCTTGTGATTAGTGGACTGTGATGTGTTCTTGATTCTTTTCTTCAATACCCAGTTTGATTTTCAATGTATCTTGCTTTATAGAGTTACATAAGTAGTCATTGTACCAATATTGTGGACACTTTTGAATTTTAGACACAAAGCAGAGAGAAAAAATAATGATAGCTAAATAATGTTCTGGAAGAAGTTCTCTAAAATTGTTAAAGCACAATTAAAGGAAAAACACAAATTTAGAAACAGCAGTAGCAAAGCCTATATGTTGGTTTTGCCTAAAGACATTGCAACCTGTATTGTTTTAAAGGAACTCAAATTTAGAAACATCGCTAGCAAACATCACGAATTCCCAAAATATCTTACTATGAATTATCCTGCACTTGAAAGTCATGGCAATGATGGGCTTGCTTTAGTTGATGAACTTTGTGTTGCAGTTTGCGAGAATATTAACCTTTATATGGAAAAAATGATGAGGAGTTTCAGGGTACTTGAAATGATTTTGCTCTAGTTGTAAGGGGCTTATTGGGGATGTATCTCAGTCATCAAGCCGAGATTAGCTCACTGTTACGATGATGAAGTTTTTTACTACTGTGAGCATGAGTGTACACCACACCTTATTTGCAGGCGAGGGAGTGATAACATAGTAATTCCCAAATGTGAGGTTGAAGGATGATGATGAGGAACTATTTGAAATGAATTATGTTGAATTCATTAGGAGACACATGGAAGGTAGCGATCTGGATATACTAGGAGGAGGATAGCTTGTGAACTTCTTTACAGTTCTTATTCCATGAAATTTCTTTGCAGATTTTATTGATTCATGGTTCACATTTGTTTTTTTTTCCTTTTTTTTTTCTTTTTGCTTTGTGTTTTCTATGCAATTATCTATCTTTTGCTTCTCTGTACCTACAAATGGAGTTAATTTTGATTTTGTATTTGTAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAGTAGTTAAATGTTCTACAACTTTTGTCATTATTTTGTCTATATAAATAATTTATGAGATCATGTCAAAATTATTAGCTACTTTAAGACATTTATGTTTACATTGATCTTAAACCGCTTTAATAGAAGTTACTATTTCTTTATC

mRNA sequence

TGGATTTTAAAACCCGTCGGTTAAACTTTAATCCTCGTTCTCCCCTTCCATTTCGTTTTTCCCTCCCTAGCCCTAGTCATGGATGTTTTATCCTTCTTCTCCCGTTGCCAATCACGTCGCCCACATCCTCCTCCGTCTGTTGCGATTGCCTCCCCTAATTCTCGTACATCTTCTTCTTCTTCTTCTTCTTTTCTGACGGGGAACTATGCAAATCCAATCAAATCAAATGGACAAAATTCATTCAATCAATGATTTCTCTAATCTTTTTCAACATCCAGATAAGGAAGAGTACACCCCCTCTCTTTCAATTTCTCATGTGTTCATCCGCTCTAATTCTGATTACTTTCTCTTCTTTGTTGCAGTATAATGAAATCCTCGACAAAGGAGTTTCCAATACACAGTACGAACAAATTTAGCCTCTCCTTCGTCTCCTTTGCATTTTTGTAATTAGCATCGATTCTATCGAACATGCCTTTTTCGACTTTCAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAGTAGTTAAATGTTCTACAACTTTTGTCATTATTTTGTCTATATAAATAATTTATGAGATCATGTCAAAATTATTAGCTACTTTAAGACATTTATGTTTACATTGATCTTAAACCGCTTTAATAGAAGTTACTATTTCTTTATC

Coding sequence (CDS)

ATGCCTTTTTCGACTTTCAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAG

Protein sequence

MPFSTFSRNSNHILLKWLMVHLTWMRTRSLCKFLDQRKHGCVRGYGVGVTPSEFFECHLNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFVINLIV
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038904040.13.9e-1156.98uncharacterized protein LOC120090445 [Benincasa hispida][more]
KAE8647951.14.5e-0771.43hypothetical protein Csa_000525 [Cucumis sativus][more]
XP_004143706.24.5e-0771.43probable calcium-binding protein CML44 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KLD72.2e-0771.43EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173500 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0003393Tan0003393gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003393.1-five_prime_utrTan0003393.1-five_prime_utr-LG10:36252564..36253031five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003393.1-exonTan0003393.1-exon-LG10:36252564..36253051exon
Tan0003393.1-exonTan0003393.1-exon-LG10:36256051..36256511exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003393.1-cdsTan0003393.1-cds-LG10:36253032..36253051CDS
Tan0003393.1-cdsTan0003393.1-cds-LG10:36256051..36256369CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003393.1-three_prime_utrTan0003393.1-three_prime_utr-LG10:36256370..36256511three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0003393.1Tan0003393.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding