Tan0001397.2 (mRNA) Snake gourd v1

Overview


Name	Tan0001397.2
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11
Location	LG04: 82929358 .. 82940960 (-)
Sequence length	1029
RNA-Seq Expression	Tan0001397.2
Synteny	Tan0001397.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCGCTCCGTCGCTCGCCGTCAAGTGGTCGCTTGTGGTCTGGTCGCTCTGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCCTCTTCGTAACCACCTAAGGTGCTTTCTCTTCTTCTTCATATCTGGTCGTGCCTTACCTAAAATTGGGTTACCGAATCGCAACCACCTAAGGTTAAATATACCTATTTAGTTGTTGATTGTTCAACGTCTTCCTACTATTATGAACTTAAAAGATGAAATTCTTTTTTTGGATTTCTATTACTGCATATATGTTGTTTGATTTTAAGGGTATTCACACAATTCACTTTTTTAGGAATTTTTAACTCTTCTTTTGGGATTTAGGTGTGTGGGGTAGCTGATTGTTTTGGAATTTGGTTTGATTCTGCAATTATTGGGGTGATGTTATGGAAGTTGAAAGCCGATTGATATCTTATATGGATGAGAGTTCTTGGGTTTCTCTATTTTTTTCTTCTTTCTTTGGCTTCTTTTAGTGGAGGATTCGAGATTCTTTGTGCTTATGGAATGTTATTGGATAATCATGTGTTAGATGATCAGTTAGTATGAACTGGTACTCTAATCAGTTAGATCTAAAAAAAAAAACCGGTGACCCAACCCGACCAACCCGAAAATATTGGGTTGGGTTGGGTTACCCTCATAAATAGGGTTCGTCGGGTTGGAAGAATTAACAACCCGGAACTTCGGGTTGGTCCAAAAAACACCCATAACCCGGACCAACCCGGCTTATGAACACCCCTAATTTAGATAGCGGTCAGAAAATGTATCAACTTAAACATTAATTGAAAATTTAATTATTTCAAATGCATTATTAATGATTATATGAGACAACCTAAGACATTATTAAATTAATACAAAGAAAAAAGCAAATGCCCAAAAAAGGTTTATTAGTTTTTTTATGACCTATTTGCTGAGGTTTAAGATATACTGTTAACCCATCATTTTATTCCCACAATTTTACATAAAAAAAAATGCAACCACTGAAGTATAATTGGGTTGGACAACATTTTTATATATATTTTGCAATATGTGAATCTAACCATTGTTGAAAGGAAAATTATAATGGGTATAGTTAATATAAGTTCTTATTTGTAAATATAGCATATTTTTTTTGTTTAAAAAATTGTAAATATAGCAAATCTAGAAAATATTTTAAATAACGTTTTTTTAATTCTCATTTTATCCTTGATTGAAGCCTAATAGACTTTTATATCACTATTCAAAATCTATCGACTATCGGTGATAGACTCTTATCATAGTCAAAATTATATCAATTATCCCAATAGACACTTATCACAGTCACAAGTTTATTAGTGATAGTCTTTTATCACTAATAGATTTTTATCACAATTATATGTATATGAGTGATTGAATGTGGCATAATGCAATTTTGAAGTTAGAGTTGGAGTATGCTGATAGACTTTTATCATAATTATGATTCTATCGGTGATAGACTTCTATTACTGATTTGCTTTCTTATTACAGTTAGGATTCTATCAATGATAAAAGTATCACTTATAGACTCTTGTCACAGTTATAAGTTTAATAGTGATAGACTGTGATAAAATATAATACACGAAGTAAACTGATAGATTTTTTATCATGGTTATTCTATCACTAATAGACTCTTATAACAATTTGACGTCTATTAGTGATATACTCTAATAGACTTTTATCATAGTCAAAAGTCTATTAGTGATAAGCCCATAGACTTCTATTAGTGATAGAATTTTATCACACTATGAAATAAACATCTTAGCTAGCGATAGACTTAAATCACACGCCTTAACTTATTCAAAGATGAAAATTAACCTATATATAAACATATTTAATTTAGATCCAAAATTATAGTAATCTAAATTGTAGCAACTAACATATATGTTTCTATCAGAGATAAACTTCAATCACGCATCACTCCCAATGATAATGATAGAAGTCTATAAGTAATGAACTTCAATTAAAAAAAGAAACAACGCATATAGAAGTTTATCAGTGATGGTGATGAACTTATATCGCTGATAGAATTATGTCACAAGACAATGATTTAAATCTATTAGGGATAGAATTCAATCTCTATAGAAAAGTTGAACGTTGGACGCCAATTGAATCTAGGTTTTTAGTTGATCGACTAAATGTTGGAGAAAGGAATAAGAAATTATAAAAAATTACAAAAAAAAAAAATCAAAGATGGTTTGAAGAAAAAAGAAAGAAGATGAATCACAATTTTCATTTGGGCTAAAGACATGTGTATGAATTTTTTTAGTAATTTAAATAAAAATTTGTCATATATGCAAATAGTTTAACAATTTATTTTGGTTAATCCATGGAATTGTGATTTCCGTTTTCGTGTGCTGCCCGTATCTACATGAGCTTCTTGTTTTCATCGCCCCAACTCGTTTAGTGTTGTCGCGCCGCTGTCGGAAGTCCCACATAGCGCTGGCCTCAAACCTTCAACTACAGAAAGTCGAGCACCCGGTCGTGAGAACACGATTTTCCCGCGTTTTTGCCGCTGGAGTGTATCGTGATTGTCGTGTCAGTTCTGCAAGTGAGTCCTTGCCCGAACTTCACCCGATATTCTATGATTTTGAACCCAGTACATTGTGGAACTTTTAGATACAATCCATGGAATTGTGATTTCCGTTTTATCTTGTTGAGTAATCTGATTTATTTTGGTTGTGGGTAACTAATTTTAGGAGACTCATTACTGGAAAGGAACTCTTACCTTTACCGAAATCCAGAACTCTTACCATTACTGGAAACATTCCCTTCCCAAACGAAAGAAGAGGACCTGCCGGTAAGAGTTCTTTTCCAGTAATGAGTCTTCGCCACTTCTTTCGTTTGGGAAGGGAATGTTTGTTGTTTTCCTTAAGATCAAGGTCCAAATTCCCCTGCAACAACATATTTTCTCCTACCAAGGAATTCAAGTCAAATCCCTTTGAAAGAGCTTTCCTTTCTCCCCCCATATCTACCATAATTTCTTCCATACCCACAGGCTCAATAAATTCTACATTCCCTACAACAACAAAAGTATCAACTTCTTCTAATGACGACATATCACCCCCTTTCCTCCCATCATCCTTACTAGAACTAGAAGATTTACTCTTCTCATTAGTAGTTTCATCGTCCATTGGGAGAGCAGTTTCATTCTCCACAATCTTCTTCCTTCCAAATTCCTTACCCTCACCAAAGGTCAAATTGCCTAACCGACATCAAAGGTCAAATTTGTTGTAGTGTCAATCTAGGGATGGACTGATCAGTATGAAAGAAAGACTTGATCGAGGCCTTTGTACTAATGACTTCTATGATCTTTTTCCTTTTGTTCATAGAAGTCATTAGACCCAAAATGCTAATAAGTTTGTATGTGCTCCCTATTTCCAACTCGAACCTTAATGAGTCTCCTAAAATTAGTTACCCACAACCAAAATAAATCAGATTACTCAACAAGATAAAACGGAAATCACAATTCCATGGATACTATCTAAAAGTTCCACAATGTACTGGGTTCAAAATCATAGAATATCGGGTGAAGTTCGGGCAAGGACTCACTTGCAGAACTGACACGACAATCACGATACACTCAAGCGGCAAAAACGCGGAAAATCGTGTTCTGACTTTCGGTGCTCGACTTTCGGTGAGTGAAGGTTTGAGGCAGGCCGCTATGTGGGACTTCCGACAAGGCGCGCGACAACACTAAACGAGTTGGGGCGATGAAAACAAGAAGCTCATGTAGATACGGGGCACACACGAAAGCTCGGTGTGCGTGAGTGAAGTGCATGGTTGAGGCCGAGGCTACGAGAATGCAGCCGCGAGCGGGAGCAGGCAGCGGCGAGAATCGCGCTCCGGCGCGAGGCACATCCAAAGGCGAGGTTGCGGCTTCAAACAAACAAGTCGATTGTAGACGGAGGTTGCAAGTTGTGCGGTGGTTGCGATCGGCGATCGTGATTGGAACAAAAGGAATAAGAAGATGGAGGAGAAGTTCGGTTGGAGGTGGACTGAATGAAACTGAGAGGAGAAGAAAAGAAAGATGTCGGCCGTGAAAGGGTCTTCTCTAGCTTCTTTTCGTGAGGACAAGAAGATGATAGCCTAGAACTTATGCCCTAGTAAGACAAAATTACAACTTAGCCCCTCCCTTAAACATTAAATTACAAAATCCATTATTCCAACCTCTTAAGTATTAAAAAAATCACCTCAAAATCACTAATATTTTTAGTCCAACTTGACTATCTTCATTTCAAATCAAGAACTTGATATTTGAACTACTTGAAATTCTCGGGCGTTACATTATTATTTGTTGAATTCCACAATGGTCAAATTCTTTGAGTCGTCTATATATTCAAGTTACCATTCATTTTTTTTTATTTGGGTGTTCTTTTAAATTATTTGTACATTTATGTGTCATTTGAGGTTTTTTGTTTTTTTAACAATTTGCTTATGATTGCATGAATATTTTAAAATGTAAATGAAAAAAAAAGAAAGAAAAGATTAGAGAAATATAAATGAATGTTATGACTTTGTTGATGTCGAAATTTGGACGATCAAATCAACGGTAAATTTGTATTTTTAGAAAAAGTAATTTCATGCAAAATAGACAGTTAATATCAGTGTGGTGTTGAGTGTCAAAACCACACTAGAAAAGAGTTGGTTGTGAACCCCACAGGCGCAGACAGATGAAGGGTGACACGCGAGTGTCGCCCGCCAGGCCATGCGAGGGTCGAGAGTAGACAAGTGTCATTATGCGACCGAGTAGGACGGTGCATCATCTAACACACCAAGATCAGTGGGCATGCATGCCAAGTTGAGAAAAGAGCAAAGTTGCGAGAAACCATGTCGTTGGTGGTGTCAGTGACACGCCTAGTGGAAGTCAAATGGGGCCCCGAGCCATAGCCTTGAAAGTCGAGGGTTCCGCCGTGAGTTTTGACGAGCGACTCTGGAGTTAAGTCCGTATATGGACAATATGGAAGCTCGCCAGATTTTGTGTCAATCGGAGTCCAGACGAGCGCTCTACGCTGGCGTATAACTCACCGGCAAAGTGACGTGCATGGGTGTCAAAAGTAAAATTTCTCATAATCTAGTATAGGGGGAGGCATGGTGTTGGCTCTCCACCACTCCTAGGCCTCATGGCCTAAGTGAACTACCCCATGACACATGCAAGTGTGTCATGGTTGGGGTGACTGTGTCAAGATGAGTGCTTTGGGGCGTGTTCCTATGGAATGGGTTTTCCAAGGACAGTGTCGACATGCCGACATTGCACCCTTTCCCATGAGCTAGAGGTTGCATCATGGGCCAGGTAGGGCATGCGATACGATAATGACTCGGCATGGACACGGGAGGGTTCACTGTTTCAACAACAGTATTCAATTTTGTCAAAAACTCAAATTCCTCCCTTCTTTTCGAAGCCCCACTCTTCTCAAAAGGGTTTTTAAACTCCACCGCACGTAAATTGGGACCATATTTAGACTTTGCAGCACCATCCCCTCACTCCAAACAACGATCACATTCCTTCTGAATATGCCCTAGCCTCCCACAATTAAAACAAAATTCAGGTAACTTCTCATATCTGCAAGGAATCCATCTATATTCCTCATTATTATCAATTTTGATCTTCAACCCTCTGCGTAGAGATTTAGATATATCAATCTTAACTCTTAATCTAGCAAATCTTCCCCAGATTCCTCCCAAGGGATTAATGTCCACACCTAAAACCTCCCCTAACGAGTTTCCCATTAGCTTCAGAACATCTTCATCCATACAAAATAAGGGGAGGTTTTAAAGTTGAACCCAAAAATCAGCGTGGGTTAGTTTTAAATTCTCAGGCTGTTCAAAGACATTTGGCTCCTGAAAAAGAATAATAGCCCCATTGAAGAACCAAGGACCATCCGCCACGATTCTATTTTTCTCTAAAATCGATTTGAATTTAAAGAAAAATAGATTTTCACCTATACAACCCATAGATGTATCCTTGTGAACTCTCCAAACATTCTTCATCACGTTCTTGAAAGAATCAATATTAATTAGCTTGAGTGAAAGCACCTTACCTATCAAACAAAATTCAAAATCATCTCTCCTTCGTTTCTGTTTTTGGACAAAGGAACGTAAATCAGCTGGCTCCTCTTCTTCGGCAGTTAGTTTCATGCCTTTGCATTGAGCAACTAATAAGCTAACATCCATTCCTTACTCCACGAAAGAATTATCCCAAACGACACCAAAACCCTAAACCCTAAAAACCCCAATACTCTCACACAGGAGAGAATTTTCCTCTCACCAGGGAGAGAATTTTTTTGGTAAAAAAATAGACTTAATTGTTCATTTATGTAACAAAAAAAAATTATTGATTTGTATGTAAATTGAATCTCATTAATAAGGCATGTAGAAATCCCAAAATCTCACATAATGATACTATTTTATTTTTTCTTTTTTGAATTTATTCCTAAAATGGTATTTGATAAATCATTGGAGTTTCCATATATTGTTTTTATTTTTGTTTAAAAACTGTAAAATCGAATTTAAGGGTATAAAAGTAAAAGAGCTACGACATTTGTGTAAAAAATAGGTTCAATTGTTCATTTATGTAAAAAATAGTGAATGTAGGTTGATTATGTAAATTATGCCTCATAAATAGGCTATTTGTATAGAAAGCCCTTAAATTTACCCTTATTTTCTCGATTGATCGAATTTTTTTGCAGAGAAATTCGGGTACCAAAAAACAGGGCAAAAAAAAAAGAAGCTGTTTGGACTTAAACGACATTGTTACATGAACTAAATCAGTAACCTGTTTCTTTAAGACAAAAAACCAGAGCTTCTCGTTTTCCATTTTTCTCACTTCTCAGTCTCAGGCAAAGCTTCCATTACTGCGAAAAGGGGAGCTCAAAGAGCTTGAGAAGAAGAAGACCAAAACCCATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGTAATTTCACAAACTCTACCCCCCTTCTCTATACAGAGCAATTTTCTGAGTCTCTGACGTTTTTGTTTACCTTTTTCCTCTTCAGGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGTATGGTGACTGACCCTTTTGATTTTTTTTTTTGTGATTACTGTTTGATAATTGAAGTGTTTGGGTTTTCGTTGAGTTTGTAATGGGGTTTATTTGATGAGCATGAGCAGGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGGTCAGTTGATTTTCCTCTTATTTTGGGGTTTTGTAACTCGGAATAGGGTTTAAGGGAGCTTTGAACTTGTGGGAAGCTCTGTTTCTTGGTGCTTGTATTGATTGTGTTGATATTGTTGACAATATGTATTAGTTTAACTTTAAACTGTTGGGTTTAGTAGTAGGCAGATTCAAGTTCAAACCCTGAAATCTTATTTCCCGTCCAATGAATGTTGTTTGTCTCCCTTCTTTTCGCTTGACTGTCTCCCTTGTTGAGTCTCGAGCTAATCTATGAACCGATAAGGAGGAGGGTAACATTTTGAGTTTAGGGGTGATTTTCAACAAATACTTGTAATTTGACCAAATGTTTGTTTCTTTGTTTTGCGGATATGGTTCAGAAAATAAGCTTAGTGGGTCTTTGACAATTCTGATATATTTGTGATATATTGAAGTTAGAAATGGCATAGTCTTGGTTCCAAAGGGTCAAAATTCAAGCTAGAAGGAAATGAAACTCGGTTGCAATAGTTGGAAATATTATTAGGGTACTAAGGGCATATCATTAATTAAGCCAATGAGTTTGTTAGTAGAGTTAATTAGAAATAATGTGCTAGAGGGAGGAGGGAGGTAATAGCATTAATTAGCCAATGAGTTTGCTAGTTGGAGTTAATTATAAATAGAGTGCTAGAGGGAGGAGGGAGGTAATAGTTTAGTTGGCTTTGGCTTAGGCTCAGGCTTGGGCGGGACTACTCAAGAATGGAGATACTAAGGTCCCAACTATCTCAAAGACTTGGGGTGTGTCATAGCTCTTCACCTTTTATATGTTTTAACATCGATTCAGTTTTTTGGTTTCTGTCAAACTTTTGGCACACGATCTTGATTTTTGAGGGCGATGATGTTAAGGAAAGGCCATGCAGCTTAAATGTATGTCTGGTCTTCCGTTGAAGACATGATTCAATTGGATTTCAATAAGAAGACTATGTTTGTTAACTTCAGAAGAAGTTCTTGAATTCCCTTAATTAAGTCAAATATGCCAGTAATGCAAAGATGTAATTTCAAGTGTCTTGAATTTTAGAGACGGTCATTAAGTAACCATCAAGATATCAAAAGCTGGAAACAAGACATTCAAAGTTGTTGAACTTCTAGGTTATTATTAATATTATTATTGTTATCATTGTTTTTCCTCTAGTTAATCTTAATGCATTGTGCTAGTTTACCACTTATAACCGTCATGCCAAAAATGATGAATATTACCTGTAGTAGATGGGACTGATCTGTCTATGGTTTGGTGCATATGCATATACATGAAAGTAACAAACGTACCCGAAGTTATATACAAGCCATCCGTTTCGAATGTCTCGCTTAAAGTATCCTTACGTACTAATTAGATTTTATTTTTTCCTACGTATTACAGGTAAAATGATGTTGTAGAAAATTCTTTTTATAGTTTTCGTAACTCAACTTATCAAAATCATGTATCTAAGAGTGATGATTCCCACTATGATCATTACATGTATGATACTAAATATAGTTGGAATAATCACATTAATAGTTGCATTGACAGTTATCTTCGGGCTCAAATATCTATTAATATGTAGGAAAAAATAAAATCTTTATAATATGTTGGAAATCTAGGATGGATATGACTTATCTAATCCATTCTTATACATACTTATGGTATAGTGTTTTAATGATTTCAAATGGTTCCAAGTGTTGAATATTGATATAATTAAATTTACCATATAATTTATTAGCTTAAGCTTTTTTTTTTTGATATAATCAAATTTATCATAACCTATTAGCTTAAGGTTTTGGGTTGATAGGTGATTTAACACTAAGATCCGTTTCTACTATCCAGTTTCGTACCTCTTGGATCGGATTTTGCAATTTTTTCTTCTGCAAGCAGATAAATGTTCCTTCATGTTCTTGACTCCAAACCTGACTGATTGCGAAGTTTTGTTTGTTTCTCTTACTTGGGTAGTTATAATTTTCCAGTGATGGTTATCATCTGTTGATATTTTAGTAGGAATCACACATAAAATATGGTGTGCTAAAACCGAAAGTTGTATCTGAATGATGTATTTTGGGAAATTTCTCTCTTAAAATATGATGAATGGATTATTTTCTCTATATCCTTCATGTATCTTTTTCCTGTTGGGTTGATATGCATATATTTTGGTTTCTCTCTTGAACTGATTGTTACCGTTCTGCAGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTTGAATTCTCTAGGTTTCTTGTTTTGATATAGAACATGCCATATTTAACTTGTACTCTTCCTGAAAAAGTAAACTACGGTTGATTGATATTGAATCTAATAGAGTTTAGAAGTAACACTTTGGGGAGTTTGGGATGATTATTGAATAAAATGGTTTCATTCTGAGTGAAGGTACTATTTTTATTAGCACTTTTGAAAGGAGTTAGAAAATTTTGAAAAGTGCTTTTAATATGTACCTTGTATATTAAAAGGTGCTTTTAATGGGAAAAAACACTTTTTCAACCATCATGGGTTGACGTAGTTGGCGTAGTGATCAATAAGGGTCATGAGTATAAGAAAAGATTTAGAGAGAATGAGTTGAATTTGTGGAGTCATCTACTTAAGTTTTAATATCTTACATGTTATCTTGGCTACCAAATGTAGATGGTGAGTTGAAGGGATCACCATCTTCCTTTAAGGTTGGGTGACCCAAATTCTTTACAGCTCGACTCAGATGAGGTCATGAGATGGATTACCCAGATCAGTTTACTCGAATTTCAACTTTGAGTCAATAATGATATTTAGGTTCTCATCCACACATTTTAAACTAGAATCCTTTTCTCCTTGAATGTCATTATTCTTTGTCAATGGGCCAAAGTTACTAATAGTTTGATATTTATAATTATGAGATTGTAGGCATGATATATGGTGCAAATCAATCTTTATTTTTAGGTTAAAATATCATTTTGGTCCAATACTTTGGGACTAATTCTATATCTAGTACTTATACTTTCAAATGTCCAAATGTGTCATCGTACTTTCAAATTTCAATAGATCTTAAAACTAATACCTACCATTAGTTTTGGAGTAAGGATGTTTCACCTCTTCGCCTTTTGGCTCTTCTTTTTATTTGTAATTGTCAGTATTTCTTGTAACGCACCTTTTGGTGTTTGGAGTTCCCTCCATTTCATTCATCAATGAAATTGTTTCTTATATATAAAAAAAATTAGTTTATGGTTAATTTTTCCAAAAAATAACCAGTCTCTACTAACTTTCCCTCTATAATTTTTGTAATCATGTTCGCATTATGTCTTTTCTTGAATGAAAATTATTATTATTATTTTGTAAAACTAGATTTAGATCCAATTCCAACTGACAGTAATAACTAGTTTTAAAATTTGTTGAAAGTGCAAGAACTAAATTTGAACCTCTGACAATACAGATACTAAAATGGAATGAATCTGTTTATGAAATATTTTTAATCAGAACATTGAATGAATCTGATGATATTTTAACCCTATTTTTACAAGTCATCAAAAGTTATTCTTAAAACAACAATAAATTTATGAGAAAACCAGTCATTAGAGGAACCAAAAGTTGAACCGAAAACCGAATCAAATGTTCTTCAAACTTTGGGAAATTAGAACTGAGAGATGTAAGCTTTGAAACTTCTTTCTTGCAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAATTTGGTGGAGCTCAGTTCAAGATGCAGAGACAGGACAATGGGTTGCTGACATGAAATGGATTTCCAAGAACTTTGCTTTGTTTTCTTTAAGGTTTTGCTGAAGCCATCTTTTAACCTGGGATTGGGATATGTACTAAACTTGTTTTTGGTATGACTATGCATTTGAATCGCTTCACGAGACAAAGTTAAGTTATATTTTGTTGGTCTATGCACTTTCATATTTGTGTTAATAGACTTTTAAATGTTTCAGTTTGGTTCGATATACTTTTCATTTACTAATTTTAGTAGTTTTTGCTATTGATGAGTGTTAGATCTTCATTATATCATAGAGATGGTACTTTTTGATGTATATAGACAAATTTAAGAGTACACAGGAGACGACATGATTTTACTTTATTTGATAGAATGATAGTGTTTTGTGTTTTTACCAAG

mRNA sequence

TGGTCGCTCCGTCGCTCGCCGTCAAGTGGTCGCTTGTGGTCTGGTCGCTCTGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCCTCTTCGTAACCACCTAAGGCAAAGCTTCCATTACTGCGAAAAGGGGAGCTCAAAGAGCTTGAGAAGAAGAAGACCAAAACCCATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAATTTGGTGGAGCTCAGTTCAAGATGCAGAGACAGGACAATGGGTTGCTGACATGAAATGGATTTCCAAGAACTTTGCTTTGTTTTCTTTAAGGTTTTGCTGAAGCCATCTTTTAACCTGGGATTGGGATATGTACTAAACTTGTTTTTGGTATGACTATGCATTTGAATCGCTTCACGAGACAAAGTTAAGTTATATTTTGTTGGTCTATGCACTTTCATATTTGTGTTAATAGACTTTTAAATGTTTCAGTTTGGTTCGATATACTTTTCATTTACTAATTTTAGTAGTTTTTGCTATTGATGAGTGTTAGATCTTCATTATATCATAGAGATGGTACTTTTTGATGTATATAGACAAATTTAAGAGTACACAGGAGACGACATGATTTTACTTTATTTGATAGAATGATAGTGTTTTGTGTTTTTACCAAG

Coding sequence (CDS)

ATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY

Homology

[Close]

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-54
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+L+N FE E A+FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-27
Identity = 52/105 (49.52%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAF 106
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L N+F
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105

[Close]

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-26
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL      F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

[Close]

BLAST of Tan0001397.2 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+FSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo] >KAG6606882.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 6.3e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+ SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Tan0001397.2 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE E A+FSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. NCBI nr
Match: XP_022998503.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE VLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDETVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNRFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.2e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+FSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL
Match: A0A6J1GBY1 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111452748 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL
Match: A0A1S3CG10 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=LOC103500319 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+ SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL
Match: A0A6J1DE90 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020248 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE E A+FSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL
Match: A0A6J1KGX7 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111493118 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE VLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDETVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNRFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397.2 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-55
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+L+N FE E A+FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0001397.2 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-50
Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 117
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]

BLAST of Tan0001397.2 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLRNAFEVEFARF 113
             A  +L +   H+R+ F+   A +
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

[Close]

BLAST of Tan0001397.2 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLRNAFEVEFARF 113
             A  +L +   H+R+ F+   A +
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

The following BLAST results are available for this feature:

BLAST of Tan0001397.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	4.0e-54	86.21	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	4.2e-27	49.52	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	7.1e-27	52.34	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	7.1e-27	52.34	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]
Q9VJE4	2.1e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of Tan0001397.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651771.1	1.3e-57	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_022949378.1	4.9e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02...	[more]
XP_008461807.1	6.3e-57	96.55	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
XP_022152550.1	2.4e-56	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]	[more]
XP_022998503.1	3.1e-56	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita maxima]	[more]

BLAST of Tan0001397.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD5	6.2e-58	97.41	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A6J1GBY1	2.4e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=36...	[more]
A0A1S3CG10	3.1e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DE90	1.2e-56	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3...	[more]
A0A6J1KGX7	1.5e-56	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita maxima OX=3661...	[more]

BLAST of Tan0001397.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	2.8e-55	86.21	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.6e-50	68.49	DNA-directed RNA polymerase, RBP11-like	[more]
AT2G29540.1	1.5e-08	30.59	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	1.5e-08	30.59	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..110
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..110
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 7.1E-25 score: 86.6
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..114 e-value: 2.1E-47 score: 161.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..112
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 2.2215E-50 score: 152.746

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0001397	Tan0001397	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001397.2-three_prime_utr	Tan0001397.2-three_prime_utr-LG04:82929358..82929805	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82929358..82929838	exon
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82931281..82931376	exon
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82933565..82933643	exon
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82933754..82933843	exon
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82933929..82934045	exon
Tan0001397.2-exon	Tan0001397.2-exon-LG04:82940795..82940960	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001397.2-cds	Tan0001397.2-cds-LG04:82929806..82929838	CDS
Tan0001397.2-cds	Tan0001397.2-cds-LG04:82931281..82931376	CDS
Tan0001397.2-cds	Tan0001397.2-cds-LG04:82933565..82933643	CDS
Tan0001397.2-cds	Tan0001397.2-cds-LG04:82933754..82933843	CDS
Tan0001397.2-cds	Tan0001397.2-cds-LG04:82933929..82933981	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001397.2-five_prime_utr	Tan0001397.2-five_prime_utr-LG04:82933982..82934045	five_prime_UTR
Tan0001397.2-five_prime_utr	Tan0001397.2-five_prime_utr-LG04:82940795..82940960	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0001397.2	Tan0001397.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity