Tan0001397 (gene) Snake gourd v1

Overview


Name	Tan0001397
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11
Location	LG04: 82929358 .. 82940960 (-)
RNA-Seq Expression	Tan0001397
Synteny	Tan0001397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCGCTCCGTCGCTCGCCGTCAAGTGGTCGCTTGTGGTCTGGTCGCTCTGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCCTCTTCGTAACCACCTAAGGTGCTTTCTCTTCTTCTTCATATCTGGTCGTGCCTTACCTAAAATTGGGTTACCGAATCGCAACCACCTAAGGTTAAATATACCTATTTAGTTGTTGATTGTTCAACGTCTTCCTACTATTATGAACTTAAAAGATGAAATTCTTTTTTTGGATTTCTATTACTGCATATATGTTGTTTGATTTTAAGGGTATTCACACAATTCACTTTTTTAGGAATTTTTAACTCTTCTTTTGGGATTTAGGTGTGTGGGGTAGCTGATTGTTTTGGAATTTGGTTTGATTCTGCAATTATTGGGGTGATGTTATGGAAGTTGAAAGCCGATTGATATCTTATATGGATGAGAGTTCTTGGGTTTCTCTATTTTTTTCTTCTTTCTTTGGCTTCTTTTAGTGGAGGATTCGAGATTCTTTGTGCTTATGGAATGTTATTGGATAATCATGTGTTAGATGATCAGTTAGTATGAACTGGTACTCTAATCAGTTAGATCTAAAAAAAAAAACCGGTGACCCAACCCGACCAACCCGAAAATATTGGGTTGGGTTGGGTTACCCTCATAAATAGGGTTCGTCGGGTTGGAAGAATTAACAACCCGGAACTTCGGGTTGGTCCAAAAAACACCCATAACCCGGACCAACCCGGCTTATGAACACCCCTAATTTAGATAGCGGTCAGAAAATGTATCAACTTAAACATTAATTGAAAATTTAATTATTTCAAATGCATTATTAATGATTATATGAGACAACCTAAGACATTATTAAATTAATACAAAGAAAAAAGCAAATGCCCAAAAAAGGTTTATTAGTTTTTTTATGACCTATTTGCTGAGGTTTAAGATATACTGTTAACCCATCATTTTATTCCCACAATTTTACATAAAAAAAAATGCAACCACTGAAGTATAATTGGGTTGGACAACATTTTTATATATATTTTGCAATATGTGAATCTAACCATTGTTGAAAGGAAAATTATAATGGGTATAGTTAATATAAGTTCTTATTTGTAAATATAGCATATTTTTTTTGTTTAAAAAATTGTAAATATAGCAAATCTAGAAAATATTTTAAATAACGTTTTTTTAATTCTCATTTTATCCTTGATTGAAGCCTAATAGACTTTTATATCACTATTCAAAATCTATCGACTATCGGTGATAGACTCTTATCATAGTCAAAATTATATCAATTATCCCAATAGACACTTATCACAGTCACAAGTTTATTAGTGATAGTCTTTTATCACTAATAGATTTTTATCACAATTATATGTATATGAGTGATTGAATGTGGCATAATGCAATTTTGAAGTTAGAGTTGGAGTATGCTGATAGACTTTTATCATAATTATGATTCTATCGGTGATAGACTTCTATTACTGATTTGCTTTCTTATTACAGTTAGGATTCTATCAATGATAAAAGTATCACTTATAGACTCTTGTCACAGTTATAAGTTTAATAGTGATAGACTGTGATAAAATATAATACACGAAGTAAACTGATAGATTTTTTATCATGGTTATTCTATCACTAATAGACTCTTATAACAATTTGACGTCTATTAGTGATATACTCTAATAGACTTTTATCATAGTCAAAAGTCTATTAGTGATAAGCCCATAGACTTCTATTAGTGATAGAATTTTATCACACTATGAAATAAACATCTTAGCTAGCGATAGACTTAAATCACACGCCTTAACTTATTCAAAGATGAAAATTAACCTATATATAAACATATTTAATTTAGATCCAAAATTATAGTAATCTAAATTGTAGCAACTAACATATATGTTTCTATCAGAGATAAACTTCAATCACGCATCACTCCCAATGATAATGATAGAAGTCTATAAGTAATGAACTTCAATTAAAAAAAGAAACAACGCATATAGAAGTTTATCAGTGATGGTGATGAACTTATATCGCTGATAGAATTATGTCACAAGACAATGATTTAAATCTATTAGGGATAGAATTCAATCTCTATAGAAAAGTTGAACGTTGGACGCCAATTGAATCTAGGTTTTTAGTTGATCGACTAAATGTTGGAGAAAGGAATAAGAAATTATAAAAAATTACAAAAAAAAAAAATCAAAGATGGTTTGAAGAAAAAAGAAAGAAGATGAATCACAATTTTCATTTGGGCTAAAGACATGTGTATGAATTTTTTTAGTAATTTAAATAAAAATTTGTCATATATGCAAATAGTTTAACAATTTATTTTGGTTAATCCATGGAATTGTGATTTCCGTTTTCGTGTGCTGCCCGTATCTACATGAGCTTCTTGTTTTCATCGCCCCAACTCGTTTAGTGTTGTCGCGCCGCTGTCGGAAGTCCCACATAGCGCTGGCCTCAAACCTTCAACTACAGAAAGTCGAGCACCCGGTCGTGAGAACACGATTTTCCCGCGTTTTTGCCGCTGGAGTGTATCGTGATTGTCGTGTCAGTTCTGCAAGTGAGTCCTTGCCCGAACTTCACCCGATATTCTATGATTTTGAACCCAGTACATTGTGGAACTTTTAGATACAATCCATGGAATTGTGATTTCCGTTTTATCTTGTTGAGTAATCTGATTTATTTTGGTTGTGGGTAACTAATTTTAGGAGACTCATTACTGGAAAGGAACTCTTACCTTTACCGAAATCCAGAACTCTTACCATTACTGGAAACATTCCCTTCCCAAACGAAAGAAGAGGACCTGCCGGTAAGAGTTCTTTTCCAGTAATGAGTCTTCGCCACTTCTTTCGTTTGGGAAGGGAATGTTTGTTGTTTTCCTTAAGATCAAGGTCCAAATTCCCCTGCAACAACATATTTTCTCCTACCAAGGAATTCAAGTCAAATCCCTTTGAAAGAGCTTTCCTTTCTCCCCCCATATCTACCATAATTTCTTCCATACCCACAGGCTCAATAAATTCTACATTCCCTACAACAACAAAAGTATCAACTTCTTCTAATGACGACATATCACCCCCTTTCCTCCCATCATCCTTACTAGAACTAGAAGATTTACTCTTCTCATTAGTAGTTTCATCGTCCATTGGGAGAGCAGTTTCATTCTCCACAATCTTCTTCCTTCCAAATTCCTTACCCTCACCAAAGGTCAAATTGCCTAACCGACATCAAAGGTCAAATTTGTTGTAGTGTCAATCTAGGGATGGACTGATCAGTATGAAAGAAAGACTTGATCGAGGCCTTTGTACTAATGACTTCTATGATCTTTTTCCTTTTGTTCATAGAAGTCATTAGACCCAAAATGCTAATAAGTTTGTATGTGCTCCCTATTTCCAACTCGAACCTTAATGAGTCTCCTAAAATTAGTTACCCACAACCAAAATAAATCAGATTACTCAACAAGATAAAACGGAAATCACAATTCCATGGATACTATCTAAAAGTTCCACAATGTACTGGGTTCAAAATCATAGAATATCGGGTGAAGTTCGGGCAAGGACTCACTTGCAGAACTGACACGACAATCACGATACACTCAAGCGGCAAAAACGCGGAAAATCGTGTTCTGACTTTCGGTGCTCGACTTTCGGTGAGTGAAGGTTTGAGGCAGGCCGCTATGTGGGACTTCCGACAAGGCGCGCGACAACACTAAACGAGTTGGGGCGATGAAAACAAGAAGCTCATGTAGATACGGGGCACACACGAAAGCTCGGTGTGCGTGAGTGAAGTGCATGGTTGAGGCCGAGGCTACGAGAATGCAGCCGCGAGCGGGAGCAGGCAGCGGCGAGAATCGCGCTCCGGCGCGAGGCACATCCAAAGGCGAGGTTGCGGCTTCAAACAAACAAGTCGATTGTAGACGGAGGTTGCAAGTTGTGCGGTGGTTGCGATCGGCGATCGTGATTGGAACAAAAGGAATAAGAAGATGGAGGAGAAGTTCGGTTGGAGGTGGACTGAATGAAACTGAGAGGAGAAGAAAAGAAAGATGTCGGCCGTGAAAGGGTCTTCTCTAGCTTCTTTTCGTGAGGACAAGAAGATGATAGCCTAGAACTTATGCCCTAGTAAGACAAAATTACAACTTAGCCCCTCCCTTAAACATTAAATTACAAAATCCATTATTCCAACCTCTTAAGTATTAAAAAAATCACCTCAAAATCACTAATATTTTTAGTCCAACTTGACTATCTTCATTTCAAATCAAGAACTTGATATTTGAACTACTTGAAATTCTCGGGCGTTACATTATTATTTGTTGAATTCCACAATGGTCAAATTCTTTGAGTCGTCTATATATTCAAGTTACCATTCATTTTTTTTTATTTGGGTGTTCTTTTAAATTATTTGTACATTTATGTGTCATTTGAGGTTTTTTGTTTTTTTAACAATTTGCTTATGATTGCATGAATATTTTAAAATGTAAATGAAAAAAAAAGAAAGAAAAGATTAGAGAAATATAAATGAATGTTATGACTTTGTTGATGTCGAAATTTGGACGATCAAATCAACGGTAAATTTGTATTTTTAGAAAAAGTAATTTCATGCAAAATAGACAGTTAATATCAGTGTGGTGTTGAGTGTCAAAACCACACTAGAAAAGAGTTGGTTGTGAACCCCACAGGCGCAGACAGATGAAGGGTGACACGCGAGTGTCGCCCGCCAGGCCATGCGAGGGTCGAGAGTAGACAAGTGTCATTATGCGACCGAGTAGGACGGTGCATCATCTAACACACCAAGATCAGTGGGCATGCATGCCAAGTTGAGAAAAGAGCAAAGTTGCGAGAAACCATGTCGTTGGTGGTGTCAGTGACACGCCTAGTGGAAGTCAAATGGGGCCCCGAGCCATAGCCTTGAAAGTCGAGGGTTCCGCCGTGAGTTTTGACGAGCGACTCTGGAGTTAAGTCCGTATATGGACAATATGGAAGCTCGCCAGATTTTGTGTCAATCGGAGTCCAGACGAGCGCTCTACGCTGGCGTATAACTCACCGGCAAAGTGACGTGCATGGGTGTCAAAAGTAAAATTTCTCATAATCTAGTATAGGGGGAGGCATGGTGTTGGCTCTCCACCACTCCTAGGCCTCATGGCCTAAGTGAACTACCCCATGACACATGCAAGTGTGTCATGGTTGGGGTGACTGTGTCAAGATGAGTGCTTTGGGGCGTGTTCCTATGGAATGGGTTTTCCAAGGACAGTGTCGACATGCCGACATTGCACCCTTTCCCATGAGCTAGAGGTTGCATCATGGGCCAGGTAGGGCATGCGATACGATAATGACTCGGCATGGACACGGGAGGGTTCACTGTTTCAACAACAGTATTCAATTTTGTCAAAAACTCAAATTCCTCCCTTCTTTTCGAAGCCCCACTCTTCTCAAAAGGGTTTTTAAACTCCACCGCACGTAAATTGGGACCATATTTAGACTTTGCAGCACCATCCCCTCACTCCAAACAACGATCACATTCCTTCTGAATATGCCCTAGCCTCCCACAATTAAAACAAAATTCAGGTAACTTCTCATATCTGCAAGGAATCCATCTATATTCCTCATTATTATCAATTTTGATCTTCAACCCTCTGCGTAGAGATTTAGATATATCAATCTTAACTCTTAATCTAGCAAATCTTCCCCAGATTCCTCCCAAGGGATTAATGTCCACACCTAAAACCTCCCCTAACGAGTTTCCCATTAGCTTCAGAACATCTTCATCCATACAAAATAAGGGGAGGTTTTAAAGTTGAACCCAAAAATCAGCGTGGGTTAGTTTTAAATTCTCAGGCTGTTCAAAGACATTTGGCTCCTGAAAAAGAATAATAGCCCCATTGAAGAACCAAGGACCATCCGCCACGATTCTATTTTTCTCTAAAATCGATTTGAATTTAAAGAAAAATAGATTTTCACCTATACAACCCATAGATGTATCCTTGTGAACTCTCCAAACATTCTTCATCACGTTCTTGAAAGAATCAATATTAATTAGCTTGAGTGAAAGCACCTTACCTATCAAACAAAATTCAAAATCATCTCTCCTTCGTTTCTGTTTTTGGACAAAGGAACGTAAATCAGCTGGCTCCTCTTCTTCGGCAGTTAGTTTCATGCCTTTGCATTGAGCAACTAATAAGCTAACATCCATTCCTTACTCCACGAAAGAATTATCCCAAACGACACCAAAACCCTAAACCCTAAAAACCCCAATACTCTCACACAGGAGAGAATTTTCCTCTCACCAGGGAGAGAATTTTTTTGGTAAAAAAATAGACTTAATTGTTCATTTATGTAACAAAAAAAAATTATTGATTTGTATGTAAATTGAATCTCATTAATAAGGCATGTAGAAATCCCAAAATCTCACATAATGATACTATTTTATTTTTTCTTTTTTGAATTTATTCCTAAAATGGTATTTGATAAATCATTGGAGTTTCCATATATTGTTTTTATTTTTGTTTAAAAACTGTAAAATCGAATTTAAGGGTATAAAAGTAAAAGAGCTACGACATTTGTGTAAAAAATAGGTTCAATTGTTCATTTATGTAAAAAATAGTGAATGTAGGTTGATTATGTAAATTATGCCTCATAAATAGGCTATTTGTATAGAAAGCCCTTAAATTTACCCTTATTTTCTCGATTGATCGAATTTTTTTGCAGAGAAATTCGGGTACCAAAAAACAGGGCAAAAAAAAAAGAAGCTGTTTGGACTTAAACGACATTGTTACATGAACTAAATCAGTAACCTGTTTCTTTAAGACAAAAAACCAGAGCTTCTCGTTTTCCATTTTTCTCACTTCTCAGTCTCAGGCAAAGCTTCCATTACTGCGAAAAGGGGAGCTCAAAGAGCTTGAGAAGAAGAAGACCAAAACCCATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGTAATTTCACAAACTCTACCCCCCTTCTCTATACAGAGCAATTTTCTGAGTCTCTGACGTTTTTGTTTACCTTTTTCCTCTTCAGGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGTATGGTGACTGACCCTTTTGATTTTTTTTTTTGTGATTACTGTTTGATAATTGAAGTGTTTGGGTTTTCGTTGAGTTTGTAATGGGGTTTATTTGATGAGCATGAGCAGGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGGTCAGTTGATTTTCCTCTTATTTTGGGGTTTTGTAACTCGGAATAGGGTTTAAGGGAGCTTTGAACTTGTGGGAAGCTCTGTTTCTTGGTGCTTGTATTGATTGTGTTGATATTGTTGACAATATGTATTAGTTTAACTTTAAACTGTTGGGTTTAGTAGTAGGCAGATTCAAGTTCAAACCCTGAAATCTTATTTCCCGTCCAATGAATGTTGTTTGTCTCCCTTCTTTTCGCTTGACTGTCTCCCTTGTTGAGTCTCGAGCTAATCTATGAACCGATAAGGAGGAGGGTAACATTTTGAGTTTAGGGGTGATTTTCAACAAATACTTGTAATTTGACCAAATGTTTGTTTCTTTGTTTTGCGGATATGGTTCAGAAAATAAGCTTAGTGGGTCTTTGACAATTCTGATATATTTGTGATATATTGAAGTTAGAAATGGCATAGTCTTGGTTCCAAAGGGTCAAAATTCAAGCTAGAAGGAAATGAAACTCGGTTGCAATAGTTGGAAATATTATTAGGGTACTAAGGGCATATCATTAATTAAGCCAATGAGTTTGTTAGTAGAGTTAATTAGAAATAATGTGCTAGAGGGAGGAGGGAGGTAATAGCATTAATTAGCCAATGAGTTTGCTAGTTGGAGTTAATTATAAATAGAGTGCTAGAGGGAGGAGGGAGGTAATAGTTTAGTTGGCTTTGGCTTAGGCTCAGGCTTGGGCGGGACTACTCAAGAATGGAGATACTAAGGTCCCAACTATCTCAAAGACTTGGGGTGTGTCATAGCTCTTCACCTTTTATATGTTTTAACATCGATTCAGTTTTTTGGTTTCTGTCAAACTTTTGGCACACGATCTTGATTTTTGAGGGCGATGATGTTAAGGAAAGGCCATGCAGCTTAAATGTATGTCTGGTCTTCCGTTGAAGACATGATTCAATTGGATTTCAATAAGAAGACTATGTTTGTTAACTTCAGAAGAAGTTCTTGAATTCCCTTAATTAAGTCAAATATGCCAGTAATGCAAAGATGTAATTTCAAGTGTCTTGAATTTTAGAGACGGTCATTAAGTAACCATCAAGATATCAAAAGCTGGAAACAAGACATTCAAAGTTGTTGAACTTCTAGGTTATTATTAATATTATTATTGTTATCATTGTTTTTCCTCTAGTTAATCTTAATGCATTGTGCTAGTTTACCACTTATAACCGTCATGCCAAAAATGATGAATATTACCTGTAGTAGATGGGACTGATCTGTCTATGGTTTGGTGCATATGCATATACATGAAAGTAACAAACGTACCCGAAGTTATATACAAGCCATCCGTTTCGAATGTCTCGCTTAAAGTATCCTTACGTACTAATTAGATTTTATTTTTTCCTACGTATTACAGGTAAAATGATGTTGTAGAAAATTCTTTTTATAGTTTTCGTAACTCAACTTATCAAAATCATGTATCTAAGAGTGATGATTCCCACTATGATCATTACATGTATGATACTAAATATAGTTGGAATAATCACATTAATAGTTGCATTGACAGTTATCTTCGGGCTCAAATATCTATTAATATGTAGGAAAAAATAAAATCTTTATAATATGTTGGAAATCTAGGATGGATATGACTTATCTAATCCATTCTTATACATACTTATGGTATAGTGTTTTAATGATTTCAAATGGTTCCAAGTGTTGAATATTGATATAATTAAATTTACCATATAATTTATTAGCTTAAGCTTTTTTTTTTTGATATAATCAAATTTATCATAACCTATTAGCTTAAGGTTTTGGGTTGATAGGTGATTTAACACTAAGATCCGTTTCTACTATCCAGTTTCGTACCTCTTGGATCGGATTTTGCAATTTTTTCTTCTGCAAGCAGATAAATGTTCCTTCATGTTCTTGACTCCAAACCTGACTGATTGCGAAGTTTTGTTTGTTTCTCTTACTTGGGTAGTTATAATTTTCCAGTGATGGTTATCATCTGTTGATATTTTAGTAGGAATCACACATAAAATATGGTGTGCTAAAACCGAAAGTTGTATCTGAATGATGTATTTTGGGAAATTTCTCTCTTAAAATATGATGAATGGATTATTTTCTCTATATCCTTCATGTATCTTTTTCCTGTTGGGTTGATATGCATATATTTTGGTTTCTCTCTTGAACTGATTGTTACCGTTCTGCAGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTTGAATTCTCTAGGTTTCTTGTTTTGATATAGAACATGCCATATTTAACTTGTACTCTTCCTGAAAAAGTAAACTACGGTTGATTGATATTGAATCTAATAGAGTTTAGAAGTAACACTTTGGGGAGTTTGGGATGATTATTGAATAAAATGGTTTCATTCTGAGTGAAGGTACTATTTTTATTAGCACTTTTGAAAGGAGTTAGAAAATTTTGAAAAGTGCTTTTAATATGTACCTTGTATATTAAAAGGTGCTTTTAATGGGAAAAAACACTTTTTCAACCATCATGGGTTGACGTAGTTGGCGTAGTGATCAATAAGGGTCATGAGTATAAGAAAAGATTTAGAGAGAATGAGTTGAATTTGTGGAGTCATCTACTTAAGTTTTAATATCTTACATGTTATCTTGGCTACCAAATGTAGATGGTGAGTTGAAGGGATCACCATCTTCCTTTAAGGTTGGGTGACCCAAATTCTTTACAGCTCGACTCAGATGAGGTCATGAGATGGATTACCCAGATCAGTTTACTCGAATTTCAACTTTGAGTCAATAATGATATTTAGGTTCTCATCCACACATTTTAAACTAGAATCCTTTTCTCCTTGAATGTCATTATTCTTTGTCAATGGGCCAAAGTTACTAATAGTTTGATATTTATAATTATGAGATTGTAGGCATGATATATGGTGCAAATCAATCTTTATTTTTAGGTTAAAATATCATTTTGGTCCAATACTTTGGGACTAATTCTATATCTAGTACTTATACTTTCAAATGTCCAAATGTGTCATCGTACTTTCAAATTTCAATAGATCTTAAAACTAATACCTACCATTAGTTTTGGAGTAAGGATGTTTCACCTCTTCGCCTTTTGGCTCTTCTTTTTATTTGTAATTGTCAGTATTTCTTGTAACGCACCTTTTGGTGTTTGGAGTTCCCTCCATTTCATTCATCAATGAAATTGTTTCTTATATATAAAAAAAATTAGTTTATGGTTAATTTTTCCAAAAAATAACCAGTCTCTACTAACTTTCCCTCTATAATTTTTGTAATCATGTTCGCATTATGTCTTTTCTTGAATGAAAATTATTATTATTATTTTGTAAAACTAGATTTAGATCCAATTCCAACTGACAGTAATAACTAGTTTTAAAATTTGTTGAAAGTGCAAGAACTAAATTTGAACCTCTGACAATACAGATACTAAAATGGAATGAATCTGTTTATGAAATATTTTTAATCAGAACATTGAATGAATCTGATGATATTTTAACCCTATTTTTACAAGTCATCAAAAGTTATTCTTAAAACAACAATAAATTTATGAGAAAACCAGTCATTAGAGGAACCAAAAGTTGAACCGAAAACCGAATCAAATGTTCTTCAAACTTTGGGAAATTAGAACTGAGAGATGTAAGCTTTGAAACTTCTTTCTTGCAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAATTTGGTGGAGCTCAGTTCAAGATGCAGAGACAGGACAATGGGTTGCTGACATGAAATGGATTTCCAAGAACTTTGCTTTGTTTTCTTTAAGGTTTTGCTGAAGCCATCTTTTAACCTGGGATTGGGATATGTACTAAACTTGTTTTTGGTATGACTATGCATTTGAATCGCTTCACGAGACAAAGTTAAGTTATATTTTGTTGGTCTATGCACTTTCATATTTGTGTTAATAGACTTTTAAATGTTTCAGTTTGGTTCGATATACTTTTCATTTACTAATTTTAGTAGTTTTTGCTATTGATGAGTGTTAGATCTTCATTATATCATAGAGATGGTACTTTTTGATGTATATAGACAAATTTAAGAGTACACAGGAGACGACATGATTTTACTTTATTTGATAGAATGATAGTGTTTTGTGTTTTTACCAAG

mRNA sequence

TGGTCGCTCCGTCGCTCGCCGTCAAGTGGTCGCTTGTGGTCTGGTCGCTCTGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCAGTGGTCGTTCGTGGTCTGGTCGCTCCGTCGCTCGCCGTCCCTCTTCGTAACCACCTAAGAGAAATTCGGGTACCAAAAAACAGGGCAAAAAAAAAAGAAGCTGTTTGGACTTAAACGACATTGTTACATGAACTAAATCAGTAACCTGTTTCTTTAAGACAAAAAACCAGAGCTTCTCGTTTTCCATTTTTCTCACTTCTCAGTCTCAGGCAAAGCTTCCATTACTGCGAAAAGGGGAGCTCAAAGAGCTTGAGAAGAAGAAGACCAAAACCCATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAATTTGGTGGAGCTCAGTTCAAGATGCAGAGACAGGACAATGGGTTGCTGACATGAAATGGATTTCCAAGAACTTTGCTTTGTTTTCTTTAAGGTTTTGCTGAAGCCATCTTTTAACCTGGGATTGGGATATGTACTAAACTTGTTTTTGGTATGACTATGCATTTGAATCGCTTCACGAGACAAAGTTAAGTTATATTTTGTTGGTCTATGCACTTTCATATTTGTGTTAATAGACTTTTAAATGTTTCAGTTTGGTTCGATATACTTTTCATTTACTAATTTTAGTAGTTTTTGCTATTGATGAGTGTTAGATCTTCATTATATCATAGAGATGGTACTTTTTGATGTATATAGACAAATTTAAGAGTACACAGGAGACGACATGATTTTACTTTATTTGATAGAATGATAGTGTTTTGTGTTTTTACCAAG

Coding sequence (CDS)

ATGAATGCCCCCGACCGATACGAGCGATTTGTCGTCCCAGAGGGAACCAAGAAGGTCTCATACGAGAGAGACACCAAGATCATAAACGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGGGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCTTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGTCAGTCGTCGCCCATGCAAGCATATAATCAAGCAATTAATGATCTGGACAAGGAACTCGACCATTTGAGAAATGCATTTGAGGTTGAGTTCGCAAGGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY

Homology

[Close]

BLAST of Tan0001397 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-54
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+L+N FE E A+FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0001397 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-27
Identity = 52/105 (49.52%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAF 106
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L N+F
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105

[Close]

BLAST of Tan0001397 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of Tan0001397 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of Tan0001397 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-26
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL      F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

[Close]

BLAST of Tan0001397 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+FSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo] >KAG6606882.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 6.3e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+ SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Tan0001397 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE E A+FSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. NCBI nr
Match: XP_022998503.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE VLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDETVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNRFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.2e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+FSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. ExPASy TrEMBL
Match: A0A6J1GBY1 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111452748 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. ExPASy TrEMBL
Match: A0A1S3CG10 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=LOC103500319 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE EFA+ SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Tan0001397 vs. ExPASy TrEMBL
Match: A0A6J1DE90 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020248 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE E A+FSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. ExPASy TrEMBL
Match: A0A6J1KGX7 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111493118 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE VLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDETVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE EFA+FSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNRFEAEFAKFSRDY 116

[Close]

BLAST of Tan0001397 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-55
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVEFARFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+L+N FE E A+FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0001397 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-50
Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 117
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]

BLAST of Tan0001397 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLRNAFEVEFARF 113
             A  +L +   H+R+ F+   A +
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

[Close]

BLAST of Tan0001397 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLRNAFEVEFARF 113
             A  +L +   H+R+ F+   A +
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

The following BLAST results are available for this feature:

BLAST of Tan0001397 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	4.0e-54	86.21	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	4.2e-27	49.52	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	7.1e-27	52.34	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	7.1e-27	52.34	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]
Q9VJE4	2.1e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of Tan0001397 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651771.1	1.3e-57	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_022949378.1	4.9e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02...	[more]
XP_008461807.1	6.3e-57	96.55	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
XP_022152550.1	2.4e-56	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]	[more]
XP_022998503.1	3.1e-56	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita maxima]	[more]

BLAST of Tan0001397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD5	6.2e-58	97.41	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A6J1GBY1	2.4e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=36...	[more]
A0A1S3CG10	3.1e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DE90	1.2e-56	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3...	[more]
A0A6J1KGX7	1.5e-56	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita maxima OX=3661...	[more]

BLAST of Tan0001397 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	2.8e-55	86.21	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.6e-50	68.49	DNA-directed RNA polymerase, RBP11-like	[more]
AT2G29540.1	1.5e-08	30.59	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	1.5e-08	30.59	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946:SF36	DNA-DIRECTED RNA POLYMERASES II IV AND V SUBUNIT 11	coord: 1..105
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..105
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..107 e-value: 9.8E-47 score: 159.4
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..106
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 5.6E-25 score: 86.9
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 6.11121E-50 score: 151.206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001397.1	Tan0001397.1	mRNA
Tan0001397.2	Tan0001397.2	mRNA
Tan0001397.3	Tan0001397.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity