Spg033122.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTGTATCCGTGCTTGCTTAGATTGGATTCCGGTAACCATTTCTAAGAATTTTTCACGAGTATTCATCTTCTTTACTGCCGGTTTTCCGCCTGTATCGGAATCGAGGAAGCAAAATTACTCTCCCTTTGATTGAACGCTATTTTATGTTGCTCCTAGTTCGGTTCCTTTCTATTAGTTTTTGAAAATGATTTGATGAAGTAAACATGATGTATGAGGATGCGAATGAGAGCTTGGATGATTTAGAGCTGTGTTTATAATGGTGATTCTGTCAATCTTATATCTCTTTCTTTCCTATTGTTTTTTCGAAAACCGAATTTGTTTCCATGATTTCTGGATGTTTTTAATTCTGATGCAGTTGCTTTTTCTGTTTTCTAATTCAAACTTTGGAAGATGTTCTTTCCTGTAATTTTTTGCCCAATAAGTTATCGAATATTATTTTTCATTCGAGTATCATGGATGGATATGTATGCATTTTAAATCTAGTAAGGTAGAAGAAAAAAACTTACCGGTTTTTCTGACGAACCCGTATACGTATTCTCGTTGTTGAGCGCCACTGATTGTTGTCTTAGTTAAGAATCAAGATCTTGAATGTAGATTGCGGGCCATCTGAATTAATTAAATATGATTGACATTTTCATTAGTCCAGTGGAAGTTAGGTATCTAGGAAAGAATTGTTGCGTTTTTCAAAAAAAAAAAAAAAAAGGAAAGAGTTGTTGTGCTCATTAGTTATCTCTTGATTGACGAGTTATATTTTCAAGTGCTCACGCATGTCCCTATGCCTTTTTTGTTTTGGCCGATCTCGTAAAGTTTCTGTGAGCCATTGCTTAGCTGAACAGTTGAATTGACAGGATAGTTAATTAAAGAATTTCAGTCCCTTTAAAGGCGATAGGTGAGTGTTATACAAAACTCAGAAGATCTCCAATGTTACCTACTATTTTAACAATGGTTAGCTGATTGTGAACTGGGTTTTCTTATAGATTCTCACAAAAACTCATATTGATACTGGTAACAAGTAACAACAATCGGGGGAATTCTATAACTGACATTATGAGATTTTTAGAGATGCAAAGATGACCGTTAATCAATTATTGAGCTATAGAATGTCTTGATATTTACTCTGTTTGTGTAATAAATATCAGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGGTGAACAACAACCTTCCTTCACTTCTGTGTTTTCATTTCCTTGAACATAGCCTTCCAAAGATTAGAGAATCATACTGACTCAAATTGACTTGGCTTGATGATGACCCTCCAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAATTATTGTTTGGCATTCTAGCATAGATTTTGTATCTCCACATTTACTCATCCAATTATTCTAGATGGATTCAAGAGCTTGGATAGATGAAGAACAGGGTTTTCAATCCAACCAGGAAATAGCCTCATCATTTTTGTTCTCTGAGGATTTTCTCATATTTATATGCTAAACCTGAATTAAACTTTGATTTCTTTTTTTTCATTGTTTTCTTTTCTTTTGAATTCCTTTTCTCTTGTTCTTCTTTAGGCTTGTTTTACCATTCTATTCTATACTGTTTTCTTATGCTCTGTATTTTGTTG ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTATTCTCACAAAAACTCATATTGATACTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTATTCTCACAAAAACTCATATTGATACTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG Homology
BLAST of Spg033122.1 vs. NCBI nr
Match: XP_022145577.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]) HSP 1 Score: 238.4 bits (607), Expect = 4.2e-59 Identity = 129/166 (77.71%), Postives = 131/166 (78.92%), Query Frame = 0
BLAST of Spg033122.1 vs. NCBI nr
Match: XP_034692789.1 (organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia]) HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53 Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0
BLAST of Spg033122.1 vs. NCBI nr
Match: XP_002274178.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis vinifera] >CBI32608.3 unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53 Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0
BLAST of Spg033122.1 vs. NCBI nr
Match: XP_010260092.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera] >DAD27859.1 TPA_asm: hypothetical protein HUJ06_029327 [Nelumbo nucifera]) HSP 1 Score: 218.4 bits (555), Expect = 4.5e-53 Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0
BLAST of Spg033122.1 vs. NCBI nr
Match: XP_041025917.1 (organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x Juglans regia]) HSP 1 Score: 216.5 bits (550), Expect = 1.7e-52 Identity = 115/164 (70.12%), Postives = 129/164 (78.66%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.0e-20 Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 6.7e-15 Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14 Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14 Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy TrEMBL
Match: A0A6J1CX06 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111014997 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 2.1e-59 Identity = 129/166 (77.71%), Postives = 131/166 (78.92%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy TrEMBL
Match: D7TQ88 (RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 7.6e-54 Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy TrEMBL
Match: A0A1U8AE68 (glycine-rich RNA-binding protein 6, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104599304 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53 Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy TrEMBL
Match: A0A5B7BY51 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_041424 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53 Identity = 117/164 (71.34%), Postives = 127/164 (77.44%), Query Frame = 0
BLAST of Spg033122.1 vs. ExPASy TrEMBL
Match: A0A5B7A8G9 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022501 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 8.4e-53 Identity = 115/164 (70.12%), Postives = 128/164 (78.05%), Query Frame = 0
BLAST of Spg033122.1 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44 Identity = 102/166 (61.45%), Postives = 119/166 (71.69%), Query Frame = 0
BLAST of Spg033122.1 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 99.4 bits (246), Expect = 2.9e-21 Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of Spg033122.1 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 83.2 bits (204), Expect = 2.1e-16 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0
BLAST of Spg033122.1 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 80.1 bits (196), Expect = 1.8e-15 Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Spg033122.1 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15 Identity = 60/159 (37.74%), Postives = 80/159 (50.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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