Spg033122 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033122
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycine-rich RNA-binding protein
Location	scaffold5: 2151767 .. 2153773 (+)
RNA-Seq Expression	Spg033122
Synteny	Spg033122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTGTATCCGTGCTTGCTTAGATTGGATTCCGGTAACCATTTCTAAGAATTTTTCACGAGTATTCATCTTCTTTACTGCCGGTTTTCCGCCTGTATCGGAATCGAGGAAGCAAAATTACTCTCCCTTTGATTGAACGCTATTTTATGTTGCTCCTAGTTCGGTTCCTTTCTATTAGTTTTTGAAAATGATTTGATGAAGTAAACATGATGTATGAGGATGCGAATGAGAGCTTGGATGATTTAGAGCTGTGTTTATAATGGTGATTCTGTCAATCTTATATCTCTTTCTTTCCTATTGTTTTTTCGAAAACCGAATTTGTTTCCATGATTTCTGGATGTTTTTAATTCTGATGCAGTTGCTTTTTCTGTTTTCTAATTCAAACTTTGGAAGATGTTCTTTCCTGTAATTTTTTGCCCAATAAGTTATCGAATATTATTTTTCATTCGAGTATCATGGATGGATATGTATGCATTTTAAATCTAGTAAGGTAGAAGAAAAAAACTTACCGGTTTTTCTGACGAACCCGTATACGTATTCTCGTTGTTGAGCGCCACTGATTGTTGTCTTAGTTAAGAATCAAGATCTTGAATGTAGATTGCGGGCCATCTGAATTAATTAAATATGATTGACATTTTCATTAGTCCAGTGGAAGTTAGGTATCTAGGAAAGAATTGTTGCGTTTTTCAAAAAAAAAAAAAAAAAGGAAAGAGTTGTTGTGCTCATTAGTTATCTCTTGATTGACGAGTTATATTTTCAAGTGCTCACGCATGTCCCTATGCCTTTTTTGTTTTGGCCGATCTCGTAAAGTTTCTGTGAGCCATTGCTTAGCTGAACAGTTGAATTGACAGGATAGTTAATTAAAGAATTTCAGTCCCTTTAAAGGCGATAGGTGAGTGTTATACAAAACTCAGAAGATCTCCAATGTTACCTACTATTTTAACAATGGTTAGCTGATTGTGAACTGGGTTTTCTTATAGATTCTCACAAAAACTCATATTGATACTGGTAACAAGTAACAACAATCGGGGGAATTCTATAACTGACATTATGAGATTTTTAGAGATGCAAAGATGACCGTTAATCAATTATTGAGCTATAGAATGTCTTGATATTTACTCTGTTTGTGTAATAAATATCAGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGGTGAACAACAACCTTCCTTCACTTCTGTGTTTTCATTTCCTTGAACATAGCCTTCCAAAGATTAGAGAATCATACTGACTCAAATTGACTTGGCTTGATGATGACCCTCCAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAATTATTGTTTGGCATTCTAGCATAGATTTTGTATCTCCACATTTACTCATCCAATTATTCTAGATGGATTCAAGAGCTTGGATAGATGAAGAACAGGGTTTTCAATCCAACCAGGAAATAGCCTCATCATTTTTGTTCTCTGAGGATTTTCTCATATTTATATGCTAAACCTGAATTAAACTTTGATTTCTTTTTTTTCATTGTTTTCTTTTCTTTTGAATTCCTTTTCTCTTGTTCTTCTTTAGGCTTGTTTTACCATTCTATTCTATACTGTTTTCTTATGCTCTGTATTTTGTTG

mRNA sequence

ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTATTCTCACAAAAACTCATATTGATACTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTATTCTCACAAAAACTCATATTGATACTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA

Protein sequence

MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

Homology

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BLAST of Spg033122 vs. NCBI nr
Match: XP_022145577.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 4.2e-59
Identity = 129/166 (77.71%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILT 60
           MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVS               
Sbjct: 1   MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVS--------------- 60

Query: 61  KTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKARE 120
                 GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKARE
Sbjct: 61  ------GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE 120

Query: 121 EMNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG 163
           EMNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Sbjct: 121 EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG 145

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BLAST of Spg033122 vs. NCBI nr
Match: XP_034692789.1 (organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHI 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVS                   
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPVRFNSTVTSPKLFVS------------------- 60

Query: 61  DTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA 120
             GLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNA
Sbjct: 61  --GLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNA 120

Query: 121 KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           KFLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Sbjct: 121 KFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG 140

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BLAST of Spg033122 vs. NCBI nr
Match: XP_002274178.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis vinifera] >CBI32608.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHI 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVS                   
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPARFNSTVTSPKLFVS------------------- 60

Query: 61  DTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA 120
             GLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNA
Sbjct: 61  --GLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNA 120

Query: 121 KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           KFLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Sbjct: 121 KFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Spg033122 vs. NCBI nr
Match: XP_010260092.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera] >DAD27859.1 TPA_asm: hypothetical protein HUJ06_029327 [Nelumbo nucifera])

HSP 1 Score: 218.4 bits (555), Expect = 4.5e-53
Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTH 60
           MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+S                  
Sbjct: 1   MAFVSAFRRALSGSSTPSSLLQWRLASIRLNSTLTTPKLFIS------------------ 60

Query: 61  IDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN 120
              GLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MN
Sbjct: 61  ---GLSRLTTDEKLKEAFSPFGHLLEAKVIADRVSGRSKGFGFVTYATIEDAEKAREGMN 120

Query: 121 AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           AKFLDGWVIFVDPAKPREPRPPPQP+PE +E GFRTNKT+GWCG
Sbjct: 121 AKFLDGWVIFVDPAKPREPRPPPQPEPEPSETGFRTNKTVGWCG 143

[Close]

BLAST of Spg033122 vs. NCBI nr
Match: XP_041025917.1 (organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x Juglans regia])

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-52
Identity = 115/164 (70.12%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTH 60
           MAF S+ RR+L+GSS  SS LH Q TS R N+TLT+PKLF+S                  
Sbjct: 1   MAFVSSIRRLLSGSSTASSILHSQYTSIRLNTTLTSPKLFIS------------------ 60

Query: 61  IDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN 120
              GLSRLTTD+KLKEAFSPFGQL++AKVI DRA+GRSKGFGFVTYA+IEEAEKARE MN
Sbjct: 61  ---GLSRLTTDEKLKEAFSPFGQLLDAKVIADRATGRSKGFGFVTYASIEEAEKAREGMN 120

Query: 121 AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           AKFLDGWVIFVDPAKPREPRPPPQP  ES++ GFRTNKT+GWCG
Sbjct: 121 AKFLDGWVIFVDPAKPREPRPPPQPLQESSDMGFRTNKTVGWCG 143

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BLAST of Spg033122 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-20
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 62  TGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK 121
           +GLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M+ K
Sbjct: 61  SGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

Query: 122 FLDGWVIFVDPAKPREPRPPPQPQ 146
           FLDGWVIF + A+PRE     QPQ
Sbjct: 121 FLDGWVIFAEYARPREQSQSYQPQ 144

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BLAST of Spg033122 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 63  GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKF 122
           GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA  E N + 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 123 LDGWVIFVDPAKPRE----------PRPPPQP 145
           L+G  IFVD AK ++           R PP P
Sbjct: 100 LNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

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BLAST of Spg033122 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.7e-15
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 54  ILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEK 113
           I TK    TGLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y T E    
Sbjct: 296 IKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGA 355

Query: 114 AREEMNAKFLDGWVIFVDPAKPR 137
           A + MN + ++GW+I VD AK R
Sbjct: 356 ALKAMNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of Spg033122 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 54  ILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEK 113
           + TK    TGLS  T++  L+ AF PFG+LVE K+I D+ S RSKG+ F+ Y T E    
Sbjct: 292 VKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGA 351

Query: 114 AREEMNAKFLDGWVIFVDPAK--PREPRPPPQPQPESTEGFRTNKTIG 160
           A + MN + ++GW+I VD AK   R+ +PP      S +  R+    G
Sbjct: 352 ALKAMNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of Spg033122 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 54  ILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEK 113
           + TK    TGLS  T++  L+ AF  FG+LVE K+I D+ S RSKG+ F+ Y T E A  
Sbjct: 279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338

Query: 114 AREEMNAKFLDGWVIFVDPAKPR 137
           A +EMN K ++GW+I VD AK +
Sbjct: 339 ALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Spg033122 vs. ExPASy TrEMBL
Match: A0A6J1CX06 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111014997 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.1e-59
Identity = 129/166 (77.71%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILT 60
           MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVS               
Sbjct: 1   MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVS--------------- 60

Query: 61  KTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKARE 120
                 GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKARE
Sbjct: 61  ------GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE 120

Query: 121 EMNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG 163
           EMNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Sbjct: 121 EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG 145

[Close]

BLAST of Spg033122 vs. ExPASy TrEMBL
Match: D7TQ88 (RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.6e-54
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHI 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVS                   
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPARFNSTVTSPKLFVS------------------- 60

Query: 61  DTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA 120
             GLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNA
Sbjct: 61  --GLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNA 120

Query: 121 KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           KFLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Sbjct: 121 KFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Spg033122 vs. ExPASy TrEMBL
Match: A0A1U8AE68 (glycine-rich RNA-binding protein 6, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104599304 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTH 60
           MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+S                  
Sbjct: 1   MAFVSAFRRALSGSSTPSSLLQWRLASIRLNSTLTTPKLFIS------------------ 60

Query: 61  IDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN 120
              GLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MN
Sbjct: 61  ---GLSRLTTDEKLKEAFSPFGHLLEAKVIADRVSGRSKGFGFVTYATIEDAEKAREGMN 120

Query: 121 AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           AKFLDGWVIFVDPAKPREPRPPPQP+PE +E GFRTNKT+GWCG
Sbjct: 121 AKFLDGWVIFVDPAKPREPRPPPQPEPEPSETGFRTNKTVGWCG 143

[Close]

BLAST of Spg033122 vs. ExPASy TrEMBL
Match: A0A5B7BY51 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_041424 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 117/164 (71.34%), Postives = 127/164 (77.44%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTH 60
           MAFAS+FRR L GSS+ SS LH Q  S R NSTL+ PKLFVS                  
Sbjct: 1   MAFASSFRRFLNGSSVRSSILHSQFASIRLNSTLSTPKLFVS------------------ 60

Query: 61  IDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN 120
              GLSRLTTD+KLKE FS FGQL+EAKVI DRASGRSKGFGFVTYATIE+AEKARE MN
Sbjct: 61  ---GLSRLTTDEKLKEVFSSFGQLLEAKVIVDRASGRSKGFGFVTYATIEDAEKAREGMN 120

Query: 121 AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           AK+LDGWVIFVDPAKPREPRPPPQP+P+ +E GFRTNKTIGWCG
Sbjct: 121 AKYLDGWVIFVDPAKPREPRPPPQPEPQPSETGFRTNKTIGWCG 143

[Close]

BLAST of Spg033122 vs. ExPASy TrEMBL
Match: A0A5B7A8G9 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022501 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.4e-53
Identity = 115/164 (70.12%), Postives = 128/164 (78.05%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTH 60
           MAFASAFRR+L GSS  SS +H Q  S R +STLT PKLFVS                  
Sbjct: 1   MAFASAFRRLLNGSSTPSSIIHSQFASIRLSSTLTTPKLFVS------------------ 60

Query: 61  IDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN 120
              GLSRLTTD+KLKEAFSPFGQL+EAKVI DRASGRSKGFGFVTYATI++A KA+E MN
Sbjct: 61  ---GLSRLTTDEKLKEAFSPFGQLLEAKVIVDRASGRSKGFGFVTYATIDDAGKAQEGMN 120

Query: 121 AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG 163
           AK+LDGWVIFVDPAKPREPRPPPQP+P+ +E GFRTNKT+GWCG
Sbjct: 121 AKYLDGWVIFVDPAKPREPRPPPQPEPQPSETGFRTNKTVGWCG 143

[Close]

BLAST of Spg033122 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 102/166 (61.45%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSS--LTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKT 60
           MAF S+FRR++ GSS  L+S SL      R  STLT+P+LFVS                 
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPSL----CVRRCSTLTSPRLFVS----------------- 60

Query: 61  HIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEM 120
               GLSRLTT++KL++AF+ FGQLV+A+VITDR SGRSKGFGFVTYATIE+AEKA+ EM
Sbjct: 61  ----GLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 120

Query: 121 NAKFLDGWVIFVDPAKPREPRPPPQPQ---PESTEGFRTNKTIGWC 162
           NAKFLDGWVIFVDPA+PREPR P Q +   P S  GF TNKTIGWC
Sbjct: 121 NAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Spg033122 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-21
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 62  TGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK 121
           +GLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M+ K
Sbjct: 61  SGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

Query: 122 FLDGWVIFVDPAKPREPRPPPQPQ 146
           FLDGWVIF + A+PRE     QPQ
Sbjct: 121 FLDGWVIFAEYARPREQSQSYQPQ 144

[Close]

BLAST of Spg033122 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-16
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 63  GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKF 122
           GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA  E N + 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 123 LDGWVIFVDPAKPRE----------PRPPPQP 145
           L+G  IFVD AK ++           R PP P
Sbjct: 100 LNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Spg033122 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-15
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 54  ILTKTHIDTGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEK 113
           + TK    TGLS  T++  L+ AF  FG+LVE K+I D+ S RSKG+ F+ Y T E A  
Sbjct: 279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338

Query: 114 AREEMNAKFLDGWVIFVDPAKPR 137
           A +EMN K ++GW+I VD AK +
Sbjct: 339 ALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Spg033122 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15
Identity = 60/159 (37.74%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 5   SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGTLNSRLMLFLLILTKTHIDTGL 64
           SA RR   G  L SS L   +S    S+ + PK                  TK ++ +GL
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPK------------------TKLYV-SGL 103

Query: 65  SRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLD 124
           S  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y T EEA KA + M+ KFLD
Sbjct: 104 SFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLD 163

Query: 125 GWVIFVDP---------AKPREPRPPPQPQPESTEGFRT 155
           G VIFV+          AKPR   P PQ +P +   FRT
Sbjct: 164 GRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRT---FRT 180

The following BLAST results are available for this feature:

BLAST of Spg033122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145577.1	4.2e-59	77.71	organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charant...	[more]
XP_034692789.1	1.2e-53	73.01	organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia]	[more]
XP_002274178.1	1.6e-53	73.01	PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis v...	[more]
XP_010260092.1	4.5e-53	71.34	PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera] ...	[more]
XP_041025917.1	1.7e-52	70.12	organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x J...	[more]

BLAST of Spg033122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	4.0e-20	55.95	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	3.0e-15	50.00	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
C0HFE5	6.7e-15	50.60	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	1.1e-14	40.74	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	2.5e-14	48.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Spg033122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX06	2.1e-59	77.71	organelle RRM domain-containing protein 2, mitochondrial-like OS=Momordica chara...	[more]
D7TQ88	7.6e-54	73.01	RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE...	[more]
A0A1U8AE68	2.2e-53	71.34	glycine-rich RNA-binding protein 6, mitochondrial OS=Nelumbo nucifera OX=4432 GN...	[more]
A0A5B7BY51	3.8e-53	71.34	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_041424 PE=4...	[more]
A0A5B7A8G9	8.4e-53	70.12	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022501 PE=4...	[more]

BLAST of Spg033122 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	1.1e-44	61.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	2.9e-21	55.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.1e-16	50.00	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.8e-15	48.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	6.8e-15	37.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..131 e-value: 2.0E-19 score: 80.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..125 e-value: 5.8E-19 score: 67.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 57..135 score: 16.107859
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 36..143 e-value: 1.1E-24 score: 89.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..162
None	No IPR available	PANTHER	PTHR48029:SF3	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..43
None	No IPR available	PANTHER	PTHR48029:SF3	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 61..162
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 61..162
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 1..43
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 63..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033122.1	Spg033122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding