Spg022726.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg022726.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	scaffold2: 4101617 .. 4102655 (-)
Sequence length	390
RNA-Seq Expression	Spg022726.1
Synteny	Spg022726.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGGTTACCTAATTTTCAAGATAACTATCTATTTTCTTTCCCCACAAACAACTGCTAACATTGTATCCTTCTGTCAGTAGGTGTAGAAATTTGTAGAAGTTAAAAATGCAAAGAGCAACCACTCCACAATCTATCATATTTTTTATATGCAAAAGTGAACAACTTGAATCCCCTTACTGTTTTATATCTTGCCTAATTCAATGCACATTCAACCTCCAACAGAGTCAAAGACTTCAAAAACATGAAACAGAACCAACCTCAAGGTCATCCTTCTTTATTTTATTTTCTTCAATCAATAATTGTTCTTTGGTTGTAGCTGCTTTTGCAAGAGATGATTCTCAATAGAAAGGAAAAACCACTAAAGTAAAGAATTATTCATGGCAGATGATTTTGATTTTCATATAAGCAATTAGTAACTTTTCAATTTTTCATCTTCTTGTGATCTACCTTTGAAGGAAAAGGAAAAGAGAAGGATAGATCATAAATTATTGTGGGAAAGTTTGTTCTGAATTTATTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTCTCTCTCTCTCTCTCCTAACCCCACCCCCTTAAAATTGTGCTATGGTTTGAATTTTCTCTGTTGTCAAATAGTTGTGCTGGCTTGTGTTGCTACTGCTGCCTAGACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

mRNA sequence

ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

Coding sequence (CDS)

ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

Protein sequence

MFALLLRLTSHIFSLRQLGSIKNVSCCYAVGVIILVLSCCDADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGLHLLLGMEGPCKGHFAPALLVCLTQVIFWVP

Homology

[Close]

BLAST of Spg022726.1 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 73/95 (76.84%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL--- 102
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETKFQ V PPRET S+GDGFCRGL   
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVL 70

Query: 103 -----HLLLGMEGPCKGHFAPALLVCLTQVIFWVP 130
                +LLLGME PCK HFAPALLV LTQVIFWVP
Sbjct: 71  LLLPRYLLLGMEDPCKCHFAPALLVRLTQVIFWVP 105

[Close]

BLAST of Spg022726.1 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 38  SCCD-ADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFC 97
           SCCD ADTGPGP  V PP  DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 98  RGLHLLLGMEGPCKGHFAPALLVCLTQVIF 127
           RGL+LLLGMEGP + H+A AL+V LTQVIF
Sbjct: 75  RGLYLLLGMEGPWERHYASALIVSLTQVIF 104

[Close]

BLAST of Spg022726.1 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 62/83 (74.70%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 55  MSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL--------HLLLGME 114
           M DPMQHGQSQPY  I+PPQ ETKFQ V PPRET S+GDGFCRGL        +LLLGME
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLLLLPRYLLLGME 60

Query: 115 GPCKGHFAPALLVCLTQVIFWVP 130
            PCK HFAPALLV LTQVIFWVP
Sbjct: 61  DPCKCHFAPALLVRLTQVIFWVP 83

[Close]

BLAST of Spg022726.1 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP  VAPPM DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFCRGL
Sbjct: 69  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 125

[Close]

BLAST of Spg022726.1 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETK Q V PPRET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of Spg022726.1 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 38  SCCD-ADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFC 97
           SCCD ADTGPGP  V PP  DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 98  RGLHLLLGMEGPCKGHFAPALLVCLTQVIF 127
           RGL+LLLGMEGP + H+A AL+V LTQVIF
Sbjct: 75  RGLYLLLGMEGPWERHYASALIVSLTQVIF 104

[Close]

BLAST of Spg022726.1 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP  VAPPM DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFCRGL
Sbjct: 67  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

[Close]

BLAST of Spg022726.1 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETK Q V PPRET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:

BLAST of Spg022726.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021578.1	2.3e-31	76.84	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0058026.1	6.2e-29	75.56	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
KAG6587617.1	1.2e-24	74.70	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652444.1	7.1e-17	80.70	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
XP_022969088.1	1.2e-16	80.70	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]

BLAST of Spg022726.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV38	3.0e-29	75.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LPD8	3.5e-17	80.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A6J1HZZ2	5.9e-17	80.70	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]

BLAST of Spg022726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg022726	Spg022726	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022726.1-cds	Spg022726.1-cds-scaffold2:4101617..4101710	CDS
Spg022726.1-cds	Spg022726.1-cds-scaffold2:4101826..4101994	CDS
Spg022726.1-cds	Spg022726.1-cds-scaffold2:4102529..4102655	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg022726.1	Spg022726.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane