Spg022726 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022726
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein B-like
Locationscaffold2: 4101617 .. 4102655 (-)
RNA-Seq ExpressionSpg022726
SyntenySpg022726
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGGTTACCTAATTTTCAAGATAACTATCTATTTTCTTTCCCCACAAACAACTGCTAACATTGTATCCTTCTGTCAGTAGGTGTAGAAATTTGTAGAAGTTAAAAATGCAAAGAGCAACCACTCCACAATCTATCATATTTTTTATATGCAAAAGTGAACAACTTGAATCCCCTTACTGTTTTATATCTTGCCTAATTCAATGCACATTCAACCTCCAACAGAGTCAAAGACTTCAAAAACATGAAACAGAACCAACCTCAAGGTCATCCTTCTTTATTTTATTTTCTTCAATCAATAATTGTTCTTTGGTTGTAGCTGCTTTTGCAAGAGATGATTCTCAATAGAAAGGAAAAACCACTAAAGTAAAGAATTATTCATGGCAGATGATTTTGATTTTCATATAAGCAATTAGTAACTTTTCAATTTTTCATCTTCTTGTGATCTACCTTTGAAGGAAAAGGAAAAGAGAAGGATAGATCATAAATTATTGTGGGAAAGTTTGTTCTGAATTTATTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTCTCTCTCTCTCTCTCCTAACCCCACCCCCTTAAAATTGTGCTATGGTTTGAATTTTCTCTGTTGTCAAATAGTTGTGCTGGCTTGTGTTGCTACTGCTGCCTAGACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

mRNA sequence

ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

Coding sequence (CDS)

ATGTTCGCATTGCTCCTCCGTTTGACTTCACATATATTCTCCTTGAGGCAGTTGGGCAGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGCTGTCTTGCTGTGATGCAGATACTGGACCAGGTCCTTGCCCAGTTGCCCCACCTATGAGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTCCTCAAGTGGAAACCAAGTTTCAAACTGTACCTCCTCCAAGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTACATCTGCTTCTAGGGATGGAGGGTCCTTGCAAAGGTCACTTTGCCCCTGCACTTCTAGTTTGTCTGACACAAGTTATCTTCTGGGTTCCATGA

Protein sequence

MFALLLRLTSHIFSLRQLGSIKNVSCCYAVGVIILVLSCCDADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGLHLLLGMEGPCKGHFAPALLVCLTQVIFWVP
Homology
[Close]
BLAST of Spg022726 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 73/95 (76.84%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL--- 102
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETKFQ V PPRET S+GDGFCRGL   
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVL 70

Query: 103 -----HLLLGMEGPCKGHFAPALLVCLTQVIFWVP 130
                +LLLGME PCK HFAPALLV LTQVIFWVP
Sbjct: 71  LLLPRYLLLGMEDPCKCHFAPALLVRLTQVIFWVP 105

[Close]
BLAST of Spg022726 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 38  SCCD-ADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFC 97
           SCCD ADTGPGP  V PP  DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 98  RGLHLLLGMEGPCKGHFAPALLVCLTQVIF 127
           RGL+LLLGMEGP + H+A AL+V LTQVIF
Sbjct: 75  RGLYLLLGMEGPWERHYASALIVSLTQVIF 104

[Close]
BLAST of Spg022726 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 62/83 (74.70%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 55  MSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL--------HLLLGME 114
           M DPMQHGQSQPY  I+PPQ ETKFQ V PPRET S+GDGFCRGL        +LLLGME
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLLLLPRYLLLGME 60

Query: 115 GPCKGHFAPALLVCLTQVIFWVP 130
            PCK HFAPALLV LTQVIFWVP
Sbjct: 61  DPCKCHFAPALLVRLTQVIFWVP 83

[Close]
BLAST of Spg022726 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP  VAPPM DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFCRGL
Sbjct: 69  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 125

[Close]
BLAST of Spg022726 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETK Q V PPRET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]
BLAST of Spg022726 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 38  SCCD-ADTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFC 97
           SCCD ADTGPGP  V PP  DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 98  RGLHLLLGMEGPCKGHFAPALLVCLTQVIF 127
           RGL+LLLGMEGP + H+A AL+V LTQVIF
Sbjct: 75  RGLYLLLGMEGPWERHYASALIVSLTQVIF 104

[Close]
BLAST of Spg022726 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP  VAPPM DPMQHGQ+QPYPPIVPPQ ETK +TVPP  +TK RGDGFCRGL
Sbjct: 67  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

[Close]
BLAST of Spg022726 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 43  DTGPGPCPVAPPMSDPMQHGQSQPYPPIVPPQVETKFQTVPPPRETKSRGDGFCRGL 100
           DTGPGP PVAPPM DPMQHGQSQPY  I+PPQ ETK Q V PPRET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:
BLAST of Spg022726 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021578.12.3e-3176.84hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0058026.16.2e-2975.56hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa][more]
KAG6587617.11.2e-2474.70hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652444.17.1e-1780.70hypothetical protein Csa_013973 [Cucumis sativus][more]
XP_022969088.11.2e-1680.70cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi... [more]
BLAST of Spg022726 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg022726 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UV383.0e-2975.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LPD83.5e-1780.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1[more]
A0A6J1HZZ25.9e-1780.70cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma... [more]
BLAST of Spg022726 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022726.1Spg022726.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane