Spg016856.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTCTCTTGCCTCACTCTTTTCCGCCGCAGCCGATAGGCGTCTACGCCGTCGATCGGACGAGCAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGATAATAATGTCGAGAGATCCTCGAGATTCTCTCCGCATCAGAAGAAATCGCCGAAATCTTCTGTTTCCGCTCAGGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAGGAATGCCATGCGATCGAACCGTCGAGGAAGGATGAGATTGTGAGGAAGACGAAATCGACGAAGCCAAAGAGTTATTGAATTATTCATTTGAATTTATTTATTTAATTTCTTTTGGATTTTGCCTCTTTTGCTCGCTGATGATCATCTGGTTTTCATCTCTCTTGATTTCTGGATTTTCCTGTTTTTTTTCTTTCCAATTGTTGGCGTTTTCACGATAATCATGGCGTTTGTTGATACGATCTGATGATCTCTCTGTCTCCTCTCTCCTCTCTAGAATATTGGTTAATAATGTAATGATGATCATGATGAGTTTATGGAAGATCATTTCAAGGCTTAGTGAATCTGTTTGGAATAATCAATTAGGAAATAATTTCCAAAGGTTTTTTTAATCACAAATGTACTTAGCTACGGTAGAGAAAGATAGAGAAAAAATGAGAAATGAGAAATTATTTTTCTCATCTAGTGTCAACATTTTAATGGTTATGTGTCGCCAACGATTATGTAGTCAAGTTTTTTTTTTAATGCATGTAAAAAGAACAAAACTTGGTTGCATACATGACATACCCCATTAAAATCTTGACAACTAAGAAATAGGAAAGTTACCAAGATTTTAATGGTTGTATGTAGTTCCTACATACTAGTATGCAGCCAAGTTTTTTCTTAATGTAAATGAGTTGATTAAGATTTGAACTTTACAAGTTGTATATATAAGTACAAATAGATGACGAGTTAACAATCCAGCCAGGTTGATATTAGCAAACAATATTATGTTTTATATTCCAAATAAAATGCGTGTTCTGAAAGACTATCTCATTGATGTCAAAGCGAGCTTAGCTCAACGGTAATTGACATATACTCTCGATTAAGAGAGGTTAGAGGTTCGAAACCCCTATCCCAAATGTTGATGTATTCAGAAAAAACATAAAAAAGTCAATACAATGTATTTTAGATTTTTAATTAAAATGAAAAATGAGAATATATATAAACTAGAATGATGGTTTGTCAAAAAATGATGGTGATGATGATGGTTAGAATGGCATTCACAAACTTTTAATTATGAAAAGTTATTTAAAAACATTTCATTAATTACTCAGTTAAAAGTTTCAGTCTTCCTCCCAAAATGATGTCTCTCCTTCTCTCTATCACGCTGAGCTTTTCTTTGAAAAAGAAGTTAATCCTCTCTAACCAAAAAAAAAAAAAAAAAGTCTATGTTTGTAATTTAAAATAATAATAATAACAATAATAATAATAATGAACAACTCAACAAAATAAATAAATGTGGTCAAAATAAATAAATAAATATAATCTATGTTTCTCCCTCTAATACATTTCTCTATATTTTATCGGTTTCTCTCTCAAATATTTGGTTTTTCTAAATTCAAATAACATCTTCTTTAAACGTCGGCAAATCTTCTTGGATATAAAGAAAATTTTGTTGTTGTTAATCCAAATATAACTTAGTGAAAGAGACCAATTATTGTTAACAGGTCGAGGGATTCATCTCTCACTTCACAATTTTTTTTTTTTGGATCTCTCACCTCACAATTGTTGTAAAAAAAATGAGGCGAGCTACGGTCCTAAGTAACTCATGAGTTTTTATCATTTGGTTTGAGTGCATGAACATTCAGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGGTAGAGGAGAAACGAAAGGGAGAGAGACAGATCTGGGCCTACTCGTGTCTGGCGGAGGAGAAACGAAAGAGAGAGAAAAAATAATGGAGATGGAGAGAGATGAGCGCCGGCGAACAGAAAAATCGAAGGAGCGGGGAGGCCAAACGCGTGAGAGAGAGGAAAGGGAGAGAAGAGAAAGAGGAAAAAAAAAGGTCGTCTGTCGGCGACCGCTGTCACCGGCAGTCGGCCACCGACTGCCGGTGAAGAAGAAGAAGAGAGGGGGAGGAAAGAAATAAAAATTAGTGTCACGTCAGCATTCCGTTAACTATTAACAGAAAATTGGATGGAGGGACCAAAATGAAACTAAAACCAAACATCGGGGGCTAAATTGTTGAGTTTGAAAACTCATGGACCAAAATGAAACCTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTTTCCCCAAATTTCTTATACATTAGAATTAAAATTAAAAATTTTAAAAGATTAATGACCAAATTGAGAATTATCTAAAATGTTAGAGACCATTTAGTATATTCAGCACAAACAAAAAAAAAAATTATAGATGAAGGTTGAAATTGAAACTTTTAAAATGTTAGGACCAAATTTTTTTTATTTTTTTTTAGAAAATGTTAGGACCAAATTGATAAAAAAAAAAAAAAAATAATAGTAATAATAAAGACTAAAACATATATTTAGCTTTTTTTTTTTATTAAATAGGTTCCATATTATTTTTAACTATTGATAATATTTTTTTTGTTCAGATCAACTTATCCACACCTACCAAAGTGAGCATAGTTAAGCTATAATTACTCTCGACCAAGAGGTCAGAGGTTCGAATCCCCCACTTTCAAATATTGTTGAACTCAAAAAAGAAAAAGTCACATTCTGACTAACTTCACTAAACAACAATCATCTAAACCTACTACACTTTATCGTTAAAAAAAACATTGTATTTTATTACCTTAAGTCTAGCCACTCTGGATTTTGAACTCGTTCTTTCAATCTCTTTATTATAACCATAATGGCCACCTACCTATTTTTTAATATTCTACGAGTTACCTCGTCAACCAAATGCAGTAGTCGATGTGTATGTAATTTGATCTGCACATTCATGATATCAACAAAAATCTCTTTAATGTTTTCACTTGTTTCGATAATTACTAAGTCAACCCTTCTATAATAACTTCATAAAGTAATAGTAATGTAGAGTTTATTATTCACACTAGTAATAAAAAAAAAATCTTCCAAAAAATTATTCCTTCCAAATCAAACTTCAAAGACCATTAATCTTTCCTCAAATTGGACCATGAAATCTCATAAGAAAAGGAAAGGAGGAAAAAAAAAAAAAAAAAAAAAAGTTATCTTTACCTCTTGAACTTGAAGGGGAAGCTTCCATTAGAGAGGGCTACTTGTAGAGTAGTAGGTTTAGGTTTAGGACCCATCAAAATTACTAATGTTGTTGTTTTTTTCCATTACAAGGACAGCACATCAGCTAGAGAATAGCTTATGAGGACAAGAACTCACTAGAGCCATAAAACCTCATCATCTCCTTGTCCTTTTTTTTTCATCTTTATTCAAAGAACCAATTTCTTGGGAGGAAAAAAAATTCAAATTTTTTTGTCTTTGCTTGCTCATCTCTATACATCTACTATGAAATTATAATTTTTATCTACTAGTCCAAAAAGAAAACATAAGGATTCTGTCATGGAAGATGAAAGAGTGTTTGAAATAAATAGGATTGATTTAAGGTTTATGGGAAATAGAAAGATTCATTTTTTTTTACCATCTTAGGCTATATATATGTTTGTTGGTTTTATTCTCTAAAAGTTTTCGTTTTATTGAATTGGGTCTTGAGATTCGATAAGTGGTTTAAGTTAATATCTTCCTTTAAGATCGCGTTGTTGGGAAAATGGAAATCGAAATCTCAGTTTCACCCTATTTTTTGAAATTTGGTTAAATGTCAAAAAGTCAAGATAGAAAAGGAAAAAACCATCATGGGTTGGTCCTAGTGGTCAATAAGGACCATTGAAAAAATAAAGGGTTAAGAGGGAATGAGTTCAATTCATAATGTTCACCGACCTAGGATTTAATATCCTACGAGACAGTTGTCCCGTGAGATTAGTGGAGGTGCGCGTAAGCTAGTCCGGACACTCACAGATATTTAAAAAATATATATATATATTTTTCAAAAGAGAAAAATATAATTAAAAATAAATAAGTTTAATTTTTAAAATCATAAAACTAAGAATGAAATTATTATCCAAGGAGGTTGGAGTAATTCAAATGCTTTGAAATTTGAGGTAGTATTGACTAAATTTATTTAGCTATATTTAATTGAAAAGACAAGTTTGACGTAAAAGTTCAATCACAATGGGAGACATGTTCCTCCTTATATGCTAGCTTTGACCAAGTGAAACTTTTAGGAGGATCTTTGCATTTATTTTCTTACCATTTTATTTTATAAATGAGAAGAGTATTCGAACCTGCAACTAAAATTATCCATTGAATTATGCTCGTGTCGGCGAGATGTGTTATCTAACAAAAAAAGAAAAAAAAAAAGAACAAACAAATGTATCTACAAATGTATTGTCCTAGATTATACATGGTCAAAAGTATCATGCTATCTAATAATTGAGTGGAATGAAGTGATATAATAAGTTCAAAATTGGCTAAACTAGTAAGTAGCTTATTTGGAGAAGTTTTTGTTGGTCAAATTAGAAATATACAATATCAAAATCCCATTTGACAATGTTAAATTTTGTTGGCTTATGATTTTATATTGTTGTGCAGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRVRIVSEMAVHRVGARAGDAEPGEFEEEEGRGEDWGEIGFEAEEEADGEDDGEEEEKEEEEEEYVVRKEGFPVDYSDLCFNGSKRATMRSGHSRPADLGELQPTPERQIRASDDKILLSNSFPMILLIRNCEKDMYLDETTKKRTSKSMKKLTEIKGNSRNNWREWATADKGNQKAFA Homology
BLAST of Spg016856.1 vs. NCBI nr
Match: XP_038899281.1 (probable membrane-associated kinase regulator 1 [Benincasa hispida]) HSP 1 Score: 110.2 bits (274), Expect = 2.5e-20 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Spg016856.1 vs. NCBI nr
Match: XP_022139633.1 (uncharacterized protein LOC111010487 [Momordica charantia]) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19 Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Spg016856.1 vs. NCBI nr
Match: XP_022941070.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata]) HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0
BLAST of Spg016856.1 vs. NCBI nr
Match: XP_023525336.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885.1 hypothetical protein SDJN03_01227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037411.1 hypothetical protein SDJN02_01037, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0
BLAST of Spg016856.1 vs. NCBI nr
Match: XP_022981938.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima]) HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0
BLAST of Spg016856.1 vs. ExPASy TrEMBL
Match: A0A6J1CG39 (uncharacterized protein LOC111010487 OS=Momordica charantia OX=3673 GN=LOC111010487 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 6.0e-20 Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Spg016856.1 vs. ExPASy TrEMBL
Match: A0A6J1J3G5 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480935 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0
BLAST of Spg016856.1 vs. ExPASy TrEMBL
Match: A0A6J1FSH9 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446467 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0
BLAST of Spg016856.1 vs. ExPASy TrEMBL
Match: A0A0A0L251 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0
BLAST of Spg016856.1 vs. ExPASy TrEMBL
Match: A0A5D3DWZ9 (Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001730 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Spg016856.1 vs. TAIR 10
Match: AT1G53163.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 2.4e-05 Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0
BLAST of Spg016856.1 vs. TAIR 10
Match: AT3G15250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 409 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 7.8e-04 Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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