Spg016856 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016856
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpre-mRNA-splicing factor CWC22 homolog
Locationscaffold9: 37880181 .. 37885549 (+)
RNA-Seq ExpressionSpg016856
SyntenySpg016856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTCTCTTGCCTCACTCTTTTCCGCCGCAGCCGATAGGCGTCTACGCCGTCGATCGGACGAGCAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGATAATAATGTCGAGAGATCCTCGAGATTCTCTCCGCATCAGAAGAAATCGCCGAAATCTTCTGTTTCCGCTCAGGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAGGAATGCCATGCGATCGAACCGTCGAGGAAGGATGAGATTGTGAGGAAGACGAAATCGACGAAGCCAAAGAGTTATTGAATTATTCATTTGAATTTATTTATTTAATTTCTTTTGGATTTTGCCTCTTTTGCTCGCTGATGATCATCTGGTTTTCATCTCTCTTGATTTCTGGATTTTCCTGTTTTTTTTCTTTCCAATTGTTGGCGTTTTCACGATAATCATGGCGTTTGTTGATACGATCTGATGATCTCTCTGTCTCCTCTCTCCTCTCTAGAATATTGGTTAATAATGTAATGATGATCATGATGAGTTTATGGAAGATCATTTCAAGGCTTAGTGAATCTGTTTGGAATAATCAATTAGGAAATAATTTCCAAAGGTTTTTTTAATCACAAATGTACTTAGCTACGGTAGAGAAAGATAGAGAAAAAATGAGAAATGAGAAATTATTTTTCTCATCTAGTGTCAACATTTTAATGGTTATGTGTCGCCAACGATTATGTAGTCAAGTTTTTTTTTTAATGCATGTAAAAAGAACAAAACTTGGTTGCATACATGACATACCCCATTAAAATCTTGACAACTAAGAAATAGGAAAGTTACCAAGATTTTAATGGTTGTATGTAGTTCCTACATACTAGTATGCAGCCAAGTTTTTTCTTAATGTAAATGAGTTGATTAAGATTTGAACTTTACAAGTTGTATATATAAGTACAAATAGATGACGAGTTAACAATCCAGCCAGGTTGATATTAGCAAACAATATTATGTTTTATATTCCAAATAAAATGCGTGTTCTGAAAGACTATCTCATTGATGTCAAAGCGAGCTTAGCTCAACGGTAATTGACATATACTCTCGATTAAGAGAGGTTAGAGGTTCGAAACCCCTATCCCAAATGTTGATGTATTCAGAAAAAACATAAAAAAGTCAATACAATGTATTTTAGATTTTTAATTAAAATGAAAAATGAGAATATATATAAACTAGAATGATGGTTTGTCAAAAAATGATGGTGATGATGATGGTTAGAATGGCATTCACAAACTTTTAATTATGAAAAGTTATTTAAAAACATTTCATTAATTACTCAGTTAAAAGTTTCAGTCTTCCTCCCAAAATGATGTCTCTCCTTCTCTCTATCACGCTGAGCTTTTCTTTGAAAAAGAAGTTAATCCTCTCTAACCAAAAAAAAAAAAAAAAAGTCTATGTTTGTAATTTAAAATAATAATAATAACAATAATAATAATAATGAACAACTCAACAAAATAAATAAATGTGGTCAAAATAAATAAATAAATATAATCTATGTTTCTCCCTCTAATACATTTCTCTATATTTTATCGGTTTCTCTCTCAAATATTTGGTTTTTCTAAATTCAAATAACATCTTCTTTAAACGTCGGCAAATCTTCTTGGATATAAAGAAAATTTTGTTGTTGTTAATCCAAATATAACTTAGTGAAAGAGACCAATTATTGTTAACAGGTCGAGGGATTCATCTCTCACTTCACAATTTTTTTTTTTTGGATCTCTCACCTCACAATTGTTGTAAAAAAAATGAGGCGAGCTACGGTCCTAAGTAACTCATGAGTTTTTATCATTTGGTTTGAGTGCATGAACATTCAGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGGTAGAGGAGAAACGAAAGGGAGAGAGACAGATCTGGGCCTACTCGTGTCTGGCGGAGGAGAAACGAAAGAGAGAGAAAAAATAATGGAGATGGAGAGAGATGAGCGCCGGCGAACAGAAAAATCGAAGGAGCGGGGAGGCCAAACGCGTGAGAGAGAGGAAAGGGAGAGAAGAGAAAGAGGAAAAAAAAAGGTCGTCTGTCGGCGACCGCTGTCACCGGCAGTCGGCCACCGACTGCCGGTGAAGAAGAAGAAGAGAGGGGGAGGAAAGAAATAAAAATTAGTGTCACGTCAGCATTCCGTTAACTATTAACAGAAAATTGGATGGAGGGACCAAAATGAAACTAAAACCAAACATCGGGGGCTAAATTGTTGAGTTTGAAAACTCATGGACCAAAATGAAACCTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTTTCCCCAAATTTCTTATACATTAGAATTAAAATTAAAAATTTTAAAAGATTAATGACCAAATTGAGAATTATCTAAAATGTTAGAGACCATTTAGTATATTCAGCACAAACAAAAAAAAAAATTATAGATGAAGGTTGAAATTGAAACTTTTAAAATGTTAGGACCAAATTTTTTTTATTTTTTTTTAGAAAATGTTAGGACCAAATTGATAAAAAAAAAAAAAAAATAATAGTAATAATAAAGACTAAAACATATATTTAGCTTTTTTTTTTTATTAAATAGGTTCCATATTATTTTTAACTATTGATAATATTTTTTTTGTTCAGATCAACTTATCCACACCTACCAAAGTGAGCATAGTTAAGCTATAATTACTCTCGACCAAGAGGTCAGAGGTTCGAATCCCCCACTTTCAAATATTGTTGAACTCAAAAAAGAAAAAGTCACATTCTGACTAACTTCACTAAACAACAATCATCTAAACCTACTACACTTTATCGTTAAAAAAAACATTGTATTTTATTACCTTAAGTCTAGCCACTCTGGATTTTGAACTCGTTCTTTCAATCTCTTTATTATAACCATAATGGCCACCTACCTATTTTTTAATATTCTACGAGTTACCTCGTCAACCAAATGCAGTAGTCGATGTGTATGTAATTTGATCTGCACATTCATGATATCAACAAAAATCTCTTTAATGTTTTCACTTGTTTCGATAATTACTAAGTCAACCCTTCTATAATAACTTCATAAAGTAATAGTAATGTAGAGTTTATTATTCACACTAGTAATAAAAAAAAAATCTTCCAAAAAATTATTCCTTCCAAATCAAACTTCAAAGACCATTAATCTTTCCTCAAATTGGACCATGAAATCTCATAAGAAAAGGAAAGGAGGAAAAAAAAAAAAAAAAAAAAAAGTTATCTTTACCTCTTGAACTTGAAGGGGAAGCTTCCATTAGAGAGGGCTACTTGTAGAGTAGTAGGTTTAGGTTTAGGACCCATCAAAATTACTAATGTTGTTGTTTTTTTCCATTACAAGGACAGCACATCAGCTAGAGAATAGCTTATGAGGACAAGAACTCACTAGAGCCATAAAACCTCATCATCTCCTTGTCCTTTTTTTTTCATCTTTATTCAAAGAACCAATTTCTTGGGAGGAAAAAAAATTCAAATTTTTTTGTCTTTGCTTGCTCATCTCTATACATCTACTATGAAATTATAATTTTTATCTACTAGTCCAAAAAGAAAACATAAGGATTCTGTCATGGAAGATGAAAGAGTGTTTGAAATAAATAGGATTGATTTAAGGTTTATGGGAAATAGAAAGATTCATTTTTTTTTACCATCTTAGGCTATATATATGTTTGTTGGTTTTATTCTCTAAAAGTTTTCGTTTTATTGAATTGGGTCTTGAGATTCGATAAGTGGTTTAAGTTAATATCTTCCTTTAAGATCGCGTTGTTGGGAAAATGGAAATCGAAATCTCAGTTTCACCCTATTTTTTGAAATTTGGTTAAATGTCAAAAAGTCAAGATAGAAAAGGAAAAAACCATCATGGGTTGGTCCTAGTGGTCAATAAGGACCATTGAAAAAATAAAGGGTTAAGAGGGAATGAGTTCAATTCATAATGTTCACCGACCTAGGATTTAATATCCTACGAGACAGTTGTCCCGTGAGATTAGTGGAGGTGCGCGTAAGCTAGTCCGGACACTCACAGATATTTAAAAAATATATATATATATTTTTCAAAAGAGAAAAATATAATTAAAAATAAATAAGTTTAATTTTTAAAATCATAAAACTAAGAATGAAATTATTATCCAAGGAGGTTGGAGTAATTCAAATGCTTTGAAATTTGAGGTAGTATTGACTAAATTTATTTAGCTATATTTAATTGAAAAGACAAGTTTGACGTAAAAGTTCAATCACAATGGGAGACATGTTCCTCCTTATATGCTAGCTTTGACCAAGTGAAACTTTTAGGAGGATCTTTGCATTTATTTTCTTACCATTTTATTTTATAAATGAGAAGAGTATTCGAACCTGCAACTAAAATTATCCATTGAATTATGCTCGTGTCGGCGAGATGTGTTATCTAACAAAAAAAGAAAAAAAAAAAGAACAAACAAATGTATCTACAAATGTATTGTCCTAGATTATACATGGTCAAAAGTATCATGCTATCTAATAATTGAGTGGAATGAAGTGATATAATAAGTTCAAAATTGGCTAAACTAGTAAGTAGCTTATTTGGAGAAGTTTTTGTTGGTCAAATTAGAAATATACAATATCAAAATCCCATTTGACAATGTTAAATTTTGTTGGCTTATGATTTTATATTGTTGTGCAGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA

mRNA sequence

ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA

Coding sequence (CDS)

ATGGAGTCTCGCCGGGAAAAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATTCCGATTTCGAATTCGGATCTATTACTCCTGACTCTCCTTCTACTTTCAACAATTCGCCGGCCGATCATCTGTTCGTCAATGGCCGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTGCCCGTGCCGGCGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGCGGAGAAGATTGGGGGGAAATCGGATTTGAGGCGGAAGAAGAGGCGGACGGAGAAGACGACGGCGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGATTTGTGTTTCAACGGATCTAAACGAGCAACGATGAGATCTGGACACTCGCGACCAGCGGATCTAGGTGAGCTACAGCCTACTCCTGAGCGCCAGATTCGGGCAAGCGACGACAAGATATTGTTGTCGAACTCTTTTCCTATGATATTATTGATAAGAAATTGTGAGAAAGACATGTATTTAGATGAAACTACAAAGAAAAGAACATCCAAGTCCATGAAGAAACTAACTGAAATTAAAGGCAATAGCAGAAACAACTGGAGAGAATGGGCAACAGCAGATAAAGGAAACCAGAAAGCTTTTGCCTAA

Protein sequence

MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRVRIVSEMAVHRVGARAGDAEPGEFEEEEGRGEDWGEIGFEAEEEADGEDDGEEEEKEEEEEEYVVRKEGFPVDYSDLCFNGSKRATMRSGHSRPADLGELQPTPERQIRASDDKILLSNSFPMILLIRNCEKDMYLDETTKKRTSKSMKKLTEIKGNSRNNWREWATADKGNQKAFA
Homology
[Close]
BLAST of Spg016856 vs. NCBI nr
Match: XP_038899281.1 (probable membrane-associated kinase regulator 1 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 55

[Close]
BLAST of Spg016856 vs. NCBI nr
Match: XP_022139633.1 (uncharacterized protein LOC111010487 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          ME+RREKSSSGE+FSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  METRREKSSSGEMFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 55

[Close]
BLAST of Spg016856 vs. NCBI nr
Match: XP_022941070.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. NCBI nr
Match: XP_023525336.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885.1 hypothetical protein SDJN03_01227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037411.1 hypothetical protein SDJN02_01037, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. NCBI nr
Match: XP_022981938.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. ExPASy TrEMBL
Match: A0A6J1CG39 (uncharacterized protein LOC111010487 OS=Momordica charantia OX=3673 GN=LOC111010487 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.0e-20
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          ME+RREKSSSGE+FSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  METRREKSSSGEMFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 55

[Close]
BLAST of Spg016856 vs. ExPASy TrEMBL
Match: A0A6J1J3G5 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480935 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. ExPASy TrEMBL
Match: A0A6J1FSH9 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446467 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. ExPASy TrEMBL
Match: A0A0A0L251 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPVQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE  SS EIFSFPSTPV DQDSDFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 3  MESRRENGSSAEIFSFPSTPVLDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRL 57

[Close]
BLAST of Spg016856 vs. ExPASy TrEMBL
Match: A0A5D3DWZ9 (Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001730 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MESRREKSSSGEIFSFPSTPVQDQDS-DFEFGSITPDSPSTFNNSPADHLFVNGRV 56
          MESRRE  SS EIFSFPSTPVQDQDS DFEFGSITPDSPSTFNNSPADHLFVNGR+
Sbjct: 1  MESRRENGSSAEIFSFPSTPVQDQDSDDFEFGSITPDSPSTFNNSPADHLFVNGRL 56

[Close]
BLAST of Spg016856 vs. TAIR 10
Match: AT1G53163.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-05
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 2  ESRREKSSSGEIFSFPSTPVQDQ-DSDFEFGSITPDSPST---FNNSPADHLFVNGRV 56
          ++R+   +SGE  + P T ++    SDFEFGS+TP SPS      NSPADHLF+NGR+
Sbjct: 3  DNRKTTPNSGE--TKPETSLETSLSSDFEFGSLTPTSPSQDPFSENSPADHLFLNGRL 58

[Close]
BLAST of Spg016856 vs. TAIR 10
Match: AT3G15250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 409 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 7.8e-04
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 18 STPVQDQDSDFEFGSITPDSPST---FNNSPADHLFVNGRV 56
          +T   +   +FEFGS+TP SPS      NSPADHLF NGR+
Sbjct: 7  TTNSDEPPPEFEFGSLTPTSPSQDSFSENSPADHLFFNGRL 47

The following BLAST results are available for this feature:
BLAST of Spg016856 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899281.12.5e-2098.18probable membrane-associated kinase regulator 1 [Benincasa hispida][more]
XP_022139633.11.2e-1994.55uncharacterized protein LOC111010487 [Momordica charantia][more]
XP_022941070.12.3e-1892.98pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata][more]
XP_023525336.12.3e-1892.98pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885.... [more]
XP_022981938.12.3e-1892.98pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima][more]
BLAST of Spg016856 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CG396.0e-2094.55uncharacterized protein LOC111010487 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1J3G51.1e-1892.98pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114809... [more]
A0A6J1FSH91.1e-1892.98pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A0A0L2514.3e-1890.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1[more]
A0A5D3DWZ91.6e-1791.07Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of Spg016856 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G53163.12.4e-0550.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G15250.17.8e-0453.66unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016856.1Spg016856.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043086 negative regulation of catalytic activity
biological_process GO:0016310 phosphorylation
cellular_component GO:0005886 plasma membrane
molecular_function GO:0016301 kinase activity
molecular_function GO:0019210 kinase inhibitor activity