Sed0016476.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATSRVVGAANLDFL Homology
BLAST of Sed0016476.1 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber]) HSP 1 Score: 103.2 bits (256), Expect = 2.3e-18 Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 0
BLAST of Sed0016476.1 vs. NCBI nr
Match: XP_023914985.1 (cytochrome P450 CYP82D47-like [Quercus suber]) HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16 Identity = 51/167 (30.54%), Postives = 89/167 (53.29%), Query Frame = 0
BLAST of Sed0016476.1 vs. NCBI nr
Match: XP_030945898.1 (uncharacterized protein LOC115970400 [Quercus lobata]) HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16 Identity = 54/157 (34.39%), Postives = 81/157 (51.59%), Query Frame = 0
BLAST of Sed0016476.1 vs. NCBI nr
Match: XP_030936648.1 (uncharacterized protein LOC115961887 [Quercus lobata]) HSP 1 Score: 95.1 bits (235), Expect = 6.1e-16 Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 0
BLAST of Sed0016476.1 vs. NCBI nr
Match: XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber]) HSP 1 Score: 94.7 bits (234), Expect = 8.0e-16 Identity = 55/150 (36.67%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of Sed0016476.1 vs. ExPASy TrEMBL
Match: A0A7N2LIC5 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18 Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Sed0016476.1 vs. ExPASy TrEMBL
Match: A0A2N9IYC8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57142 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 5.4e-18 Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 0
BLAST of Sed0016476.1 vs. ExPASy TrEMBL
Match: A0A7N2L9Q3 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 7.1e-18 Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0
BLAST of Sed0016476.1 vs. ExPASy TrEMBL
Match: A0A2N9EYC3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7737 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17 Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 0
BLAST of Sed0016476.1 vs. ExPASy TrEMBL
Match: A0A7N2N656 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Sed0016476.1 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 48.1 bits (113), Expect = 8.0e-06 Identity = 34/123 (27.64%), Postives = 59/123 (47.97%), Query Frame = 0
BLAST of Sed0016476.1 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 43.1 bits (100), Expect = 2.6e-04 Identity = 31/127 (24.41%), Postives = 60/127 (47.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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