Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA
mRNA sequence
ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA
Coding sequence (CDS)
ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTATTTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGTCCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTCAAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTATGTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA
Protein sequence
MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATSRVVGAANLDFL
Homology
BLAST of Sed0016476 vs. NCBI nr
Match:
XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])
HSP 1 Score: 103.2 bits (256), Expect = 2.3e-18
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 0
Query: 3 PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFA 62
PF+K+N DAA RSG+GA+ RNE GE+M A+S V ++ E LA R ++EFA
Sbjct: 356 PFFKMNFDAAIFNDSGRSGFGAVIRNELGEVMAALSAIGPSVSSSDEAETLACRKAMEFA 415
Query: 63 LDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKL 122
+D GF+ + +E ++ V L+ + V +V + + L L+ V FSW N++
Sbjct: 416 VDAGFNELIIEGDSINVIKALSSSSPDLSVVGNVVADIKCLISGLRRVSFSWVNRDCNRV 475
Query: 123 AHFLAKLAALGENANWWMEECPPCMLD 150
AH LAK A E +WME+ PP LD
Sbjct: 476 AHALAKFANSLEEDLYWMEDAPPVALD 502
BLAST of Sed0016476 vs. NCBI nr
Match:
XP_023914985.1 (cytochrome P450 CYP82D47-like [Quercus suber])
HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 51/167 (30.54%), Postives = 89/167 (53.29%), Query Frame = 0
Query: 4 FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFAL 63
++K N D A + +G G + + G ++ A+S+ +E V +AE++E LAI+ ++ FA+
Sbjct: 8 WFKANVDGAIFKESNSAGIGVVVCDSQGWVLAALSEKVEGVQEAEVIETLAIQWAIRFAI 67
Query: 64 DMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLA 123
+ F+ + +ES++ V + D V I+E+ + LA LKS F + +AN++A
Sbjct: 68 ETSFNCVIIESDSLGVVKAIQDSADSTCHVGHIIEDVKQLAKALKSCDFQHTKREANQIA 127
Query: 124 HFLAKLAALGENANWWMEECPPCMLDIY------RSKLGIATSRVVG 165
H L + A + W+EE PPC+ D+ R L I T + G
Sbjct: 128 HTLVRNAIKVDTVLAWLEEIPPCVADVVISDWIGRLSLNIITKVIAG 174
BLAST of Sed0016476 vs. NCBI nr
Match:
XP_030945898.1 (uncharacterized protein LOC115970400 [Quercus lobata])
HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 54/157 (34.39%), Postives = 81/157 (51.59%), Query Frame = 0
Query: 1 MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVE 60
+ P YK N DAA + +G G + R+ GG I+ A+S+ I+ EL EALA R +V
Sbjct: 21 LEPVYKANFDAAMFEQLGLAGLGVVLRDSGGHIIAALSEKIKLPQTVELAEALAARRAVL 80
Query: 61 FALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQAN 120
FA + + VE + RV L + C T + EETR L CL+ F + + N
Sbjct: 81 FATEFSIFKVMVEGDCLRVIQALNEQGSCLTMFGHVAEETRRLGSCLELCSFHHVKREGN 140
Query: 121 KLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGI 158
KLAH LA+ A L + + W+EE P + +++ +
Sbjct: 141 KLAHSLARRAVLPADVDVWVEELPEDLDAVFQGDFAV 177
BLAST of Sed0016476 vs. NCBI nr
Match:
XP_030936648.1 (uncharacterized protein LOC115961887 [Quercus lobata])
HSP 1 Score: 95.1 bits (235), Expect = 6.1e-16
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 0
Query: 4 FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFAL 63
F+K+N D A + SGYGA+ RNE GE+M A++ V D+E VE +A R ++EFA+
Sbjct: 28 FFKLNFDGACFDEGAASGYGAVIRNEKGEVMAALAARGGAVRDSEEVEVMACRKALEFAI 87
Query: 64 DMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLA 123
D GF I +E N V M++ + + I E+ LA +S+ ++ R AN +A
Sbjct: 88 DAGFTEIVLEGNNALVMKMISQAQPDLSRLGLIYEDIWCLAAGFRSISYNCIRRSANGVA 147
Query: 124 HFLAKLAALGENANWWMEECPPCMLD 150
H LA+ A L +N W+EE PP +D
Sbjct: 148 HSLARFARLLDNEIVWLEEDPPPAVD 173
BLAST of Sed0016476 vs. NCBI nr
Match:
XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber])
HSP 1 Score: 94.7 bits (234), Expect = 8.0e-16
Identity = 55/150 (36.67%), Postives = 86/150 (57.33%), Query Frame = 0
Query: 6 KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDM 65
KIN D AT +G GAI RN+ G +M A + I E+VE LA R+++ FA ++
Sbjct: 93 KINFDGATFSDLSSAGLGAIIRNDLGPVMAAFTHLIPLPTSVEMVEVLAARSALCFAKEL 152
Query: 66 GFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAHF 125
GF+ I VE +++ V L+ + + IV++ +VLA L +V F+ R Q N++AH
Sbjct: 153 GFNNIIVEGDSEIVIKALSTNGPSFSSIGHIVKDVKVLASSLGNVSFNHTRRQGNRVAHG 212
Query: 126 LAKLAALGENANWWMEECPPCMLDIYRSKL 156
LA+LA + WME+ PP + +Y S++
Sbjct: 213 LARLACNFIHFQSWMEDVPPAVEGVYASEI 242
BLAST of Sed0016476 vs. ExPASy TrEMBL
Match:
A0A7N2LIC5 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 0
Query: 3 PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFA 62
P YK N DAA +G G + R+ GG ++ A+S+ I+ EL EALA R +V FA
Sbjct: 18 PVYKANFDAALFEHVGLAGLGVVLRDSGGNVIAALSEKIKLPQTVELAEALAARRAVIFA 77
Query: 63 LDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKL 122
++ + VE + RV L G+ C T +VEETR L CL+ F + + NKL
Sbjct: 78 AELSIFKVMVEGDCLRVIQALNGQGSCLTMFGHVVEETRRLGSCLELCSFHHVKREGNKL 137
Query: 123 AHFLAKLAALGENANWWMEECP 145
AH LA+ A L N + W+EE P
Sbjct: 138 AHSLARRAVLSANVDVWVEELP 159
BLAST of Sed0016476 vs. ExPASy TrEMBL
Match:
A0A2N9IYC8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57142 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 5.4e-18
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 0
Query: 5 YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALD 64
YK+N D A R +G G I RN GE+M A+SQ I + E VEA A R++++FA D
Sbjct: 1519 YKVNYDGAVFNDRNEAGIGVIIRNHQGEVMGALSQRIPYPHSVEAVEASAARSAIQFAKD 1578
Query: 65 MGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAH 124
+GF I++E ++ + + C T I+E+ R +A L+SV+F + + N +AH
Sbjct: 1579 LGFMNIDLEGDSTSIVEAILLTTPCSTIYGNIIEDIRQIARGLQSVQFLHIKREGNVMAH 1638
Query: 125 FLAKLAALGENANWWMEECPP 146
LAK A + + WME PP
Sbjct: 1639 LLAKRAGINKPFETWMESVPP 1659
BLAST of Sed0016476 vs. ExPASy TrEMBL
Match:
A0A7N2L9Q3 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 7.1e-18
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0
Query: 3 PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFA 62
P YK N DAA + +G G + R+ GG I+ A+S+ I+ EL EALA R +V FA
Sbjct: 54 PVYKANFDAALFEQLGLAGLGVVLRDSGGHIIAALSEKIKLPQTVELAEALAARRAVLFA 113
Query: 63 LDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKL 122
++ + VE + RV L + C T +VEETR L CL+ F + + NKL
Sbjct: 114 TELSIFKVMVEGDCLRVIQALNEQGSCLTMFGHVVEETRRLGSCLELCSFHHVKREGNKL 173
Query: 123 AHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATS 161
AH LA+ A L + + W+EE P + +++ + S
Sbjct: 174 AHSLARRAVLSADVDVWVEELPEDLDAVFQGDCAVVVS 211
BLAST of Sed0016476 vs. ExPASy TrEMBL
Match:
A0A2N9EYC3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7737 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 0
Query: 5 YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALD 64
YK+N D A R +G G I RN GE+M A+SQ I + E VEA A R++++FA D
Sbjct: 1476 YKVNYDGAVFNDRNEAGIGVIIRNHRGEVMGALSQRIPYPHSVEAVEASAARSAIQFAKD 1535
Query: 65 MGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAH 124
GF I++E ++ + + C T I+E+ R +A L+SV+F + + N +AH
Sbjct: 1536 SGFMNIDLEGDSTSIVEAILLTTPCSTIYGNIIEDIRQIARGLQSVQFLHVKREGNVMAH 1595
Query: 125 FLAKLAALGENANWWMEECPP 146
LAK A + + WME PP
Sbjct: 1596 LLAKRAGINKPFETWMETVPP 1616
BLAST of Sed0016476 vs. ExPASy TrEMBL
Match:
A0A7N2N656 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
Query: 3 PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFA 62
P YK N DAA +G G + R+ GG ++ A+S+ I+ EL EALA R +V FA
Sbjct: 18 PVYKANFDAALFEHVGLAGLGVVLRDSGGNVIAALSEKIKLPQTVELAEALAARRAVIFA 77
Query: 63 LDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKL 122
++ + VE + RV L G+ C T +VEETR L CL+ F + + NKL
Sbjct: 78 AELSIFKVMVEGDCLRVIQALNGQGSCLTMFGHVVEETRRLGSCLELCSFHHVKREGNKL 137
Query: 123 AHFLAKLAALGENANWWMEECP 145
AH LA+ A L + + W+EE P
Sbjct: 138 AHSLARRAVLSADVDVWVEEQP 159
BLAST of Sed0016476 vs. TAIR 10
Match:
AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 48.1 bits (113), Expect = 8.0e-06
Identity = 34/123 (27.64%), Postives = 59/123 (47.97%), Query Frame = 0
Query: 6 KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDM 65
K NTDA ++ R G G I RNE G +++ ++ + + E A+R +V
Sbjct: 146 KCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRF 205
Query: 66 GFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANKLAHF 125
+ I ES+AQ + +L D ++ +E+ + L H + VKF + NK+A
Sbjct: 206 NYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADR 265
Query: 126 LAK 129
+A+
Sbjct: 266 IAR 267
BLAST of Sed0016476 vs. TAIR 10
Match:
AT3G09510.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 43.1 bits (100), Expect = 2.6e-04
Identity = 31/127 (24.41%), Postives = 60/127 (47.24%), Query Frame = 0
Query: 2 APFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEF 61
A + K N DA ++++ + G I RN G + S + + E A+ +++
Sbjct: 331 ATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQ 390
Query: 62 ALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSVKFSWCRHQANK 121
G+ + +E + Q + ++ G I + + +E+ A+ S++F + R + NK
Sbjct: 391 TWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNK 450
Query: 122 LAHFLAK 129
LAH LAK
Sbjct: 451 LAHVLAK 456
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A7N2LIC5 | 4.1e-18 | 39.44 | RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A2N9IYC8 | 5.4e-18 | 37.59 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A7N2L9Q3 | 7.1e-18 | 35.44 | RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A2N9EYC3 | 1.6e-17 | 37.59 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A7N2N656 | 2.7e-17 | 38.73 | RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G34320.1 | 8.0e-06 | 27.64 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT3G09510.1 | 2.6e-04 | 24.41 | Ribonuclease H-like superfamily protein | [more] |