Sed0013765.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA ATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGA MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGGCYSCGESGHFARECPNNARG Homology
BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65 Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0
BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida]) HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65 Identity = 170/207 (82.13%), Postives = 180/207 (86.96%), Query Frame = 0
BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 257.7 bits (657), Expect = 8.1e-65 Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0
BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus]) HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64 Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0
BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima]) HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64 Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50 Identity = 144/208 (69.23%), Postives = 152/208 (73.08%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.5e-42 Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 8.5e-41 Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24 Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16 Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 2.3e-65 Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65 Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65 Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 5.5e-59 Identity = 154/199 (77.39%), Postives = 165/199 (82.91%), Query Frame = 0
BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 8.8e-57 Identity = 148/194 (76.29%), Postives = 160/194 (82.47%), Query Frame = 0
BLAST of Sed0013765.1 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B ) HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43 Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0
BLAST of Sed0013765.1 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 ) HSP 1 Score: 168.3 bits (425), Expect = 6.1e-42 Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0
BLAST of Sed0013765.1 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 ) HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25 Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0
BLAST of Sed0013765.1 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 ) HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17 Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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