Sed0013765 (gene) Chayote v1

Overview
NameSed0013765
Typegene
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich protein 2-like
LocationLG04: 46950993 .. 46952379 (-)
RNA-Seq ExpressionSed0013765
SyntenySed0013765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA

mRNA sequence

CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA

Coding sequence (CDS)

ATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGA

Protein sequence

MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGGCYSCGESGHFARECPNNARG
Homology
BLAST of Sed0013765 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

BLAST of Sed0013765 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65
Identity = 170/207 (82.13%), Postives = 180/207 (86.96%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           MAERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAG-------GGGGYGGGGGGGRGRR--GGYGFDGGSG 120
           GR+KAVDVTGP EA+VQGSR  G+G       GGGGYGGGGGGGRGRR  GGYGF+GGSG
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSG 120

Query: 121 ----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGG 180
               GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGDRY G
Sbjct: 121 GGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-G 180

Query: 181 GGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGNCYSCGESGHFARECPSSGR 204

BLAST of Sed0013765 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 8.1e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGTYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

BLAST of Sed0013765 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGG-----------GGGYGGGGGGGRGRR--GGYGFD 120
           GR+KAVDVTGP EA+VQGSR  G GG           GGGYGGGGGGGRGRR  GGYGF+
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSG----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG-GGGG 180
           GGSG    GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGG
Sbjct: 121 GGSGGGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGGGGGGGGGG--CYSCGESGHFARECPNNAR 195
           DRYGGGGGGGGGG  CYSCGESGHFARECP++ R
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

BLAST of Sed0013765 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64
Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY----G 180
             G  GG GGG YGGGYG G GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY    G
Sbjct: 121 GRGLYGGSGGGGYGGGYGSG-GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 207

BLAST of Sed0013765 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50
Identity = 144/208 (69.23%), Postives = 152/208 (73.08%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWFSDQKG+GFI+PD GGEDLFVHQS IRS+GFRSL  GE VEF +ES  DGR
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 63  AKAVDVTGPAEANVQGSRAAGAG----GGGGYGGG----GGGGRGRRGGY-GFDG--GSG 122
            KAVDVTGP  A VQG R  G G    GGGGYGGG    GGGGRG   GY G DG  G G
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 123 GGYGGGR----GGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY-G 182
           GGYGGG     GGG YGGG G G GG GGG  CFKCGE+GH ARDC QSGGGGGG R+ G
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGG 186

Query: 183 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGGGCY CGE GHFAREC +  R
Sbjct: 187 GGGGGGGGGCYKCGEDGHFARECTSGGR 214

BLAST of Sed0013765 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-42
Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWF  QKG+GFI+P  GG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGD 122
            KA++V+GP  A VQG+             GGGG  G RGG+    G GGG GGGRGGG 
Sbjct: 73  PKAIEVSGPDGAPVQGN------------SGGGGSSGGRGGF----GGGGGRGGGRGGGS 132

Query: 123 YGGGYG----GGRGGGGGGGACFKCGEAGHMARDCFQSG----GGGGGDRYGGGGGGGGG 182
           YGGGYG    GGRGGGGG  +CFKCGE GHMAR+C Q G    GGGGG RYG GGGGGGG
Sbjct: 133 YGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG 192

Query: 183 G----CYSCGESGHFAREC 190
           G    CYSCGESGHFAR+C
Sbjct: 193 GGGLSCYSCGESGHFARDC 195

BLAST of Sed0013765 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.5e-41
Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           ER  G VKWF  QKG+GFI+PD GG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGG-GGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 122
            KA+DV+GP  A VQG+   G+ GG GG+GGG GGGR          GSGGGYGGG    
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGR----------GSGGGYGGG---- 128

Query: 123 DYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG---------------GGGGDRYG 182
             GGGYGG  GGG GG  C+KCGE GHMARDC + GG               GGGG  YG
Sbjct: 129 --GGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYG 188

Query: 183 G---GGGGGGGGCYSCGESGHFARECPNNAR 195
           G   GGGGGGG CYSCGESGHFAR+C +  R
Sbjct: 189 GGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

BLAST of Sed0013765 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0

Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R  GKV WFSD KGYGFI+PD GGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 121
           + KA++VT P   ++     +  G GG     G  G   +   G  GG   G GGGR  G
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG 127

Query: 122 DYGGGY---------------GGGRGGGGGGGA--CFKCGEAGHMARDCFQSGGGGGGDR 181
             G  Y               GGG  GGGGGG   C+ CGE GH+A+DC    GG GG+R
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC---RGGSGGNR 187

Query: 182 YGGGG--GGGGGGCYSCGESGHFARECPNNARG 196
           YGGGG  G GG GCY CG  GHFAR+C  N  G
Sbjct: 188 YGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGG 217

BLAST of Sed0013765 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0

Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R +GKV WF+  KGYGFI+PD G  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RAKAVDVTGPAEANVQ---GSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGG- 121
           + KAV+VT P   +++    SR  GA  GG  GG G    G  G    D G GGG GGG 
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGG--GGSGCYNCGELGHISKDCGIGGGGGGGE 127

Query: 122 ---RGG------GDYG--------GGYGGGRGG-GGGGGACFKCGEAGHMARDCFQSGGG 181
              RGG      GD G         G G  RG   GG   C+ CG+ GH+ARDC Q   G
Sbjct: 128 RRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 187

Query: 182 GGGDRYGGGGGGGGGGCYSCGESGHFAREC 190
            G  R  G   GG  GCY+CG+ GHFAR+C
Sbjct: 188 NGDQR--GAVKGGNDGCYTCGDVGHFARDC 213

BLAST of Sed0013765 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.3e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

BLAST of Sed0013765 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65
Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY----G 180
             G  GG GGG YGGGYG G GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY    G
Sbjct: 121 GRGLYGGSGGGGYGGGYGSG-GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 207

BLAST of Sed0013765 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGG-----------GGGYGGGGGGGRGRR--GGYGFD 120
           GR+KAVDVTGP EA+VQGSR  G GG           GGGYGGGGGGGRGRR  GGYGF+
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSG----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG-GGGG 180
           GGSG    GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGG
Sbjct: 121 GGSGGGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGGGGGGGGGG--CYSCGESGHFARECPNNAR 195
           DRYGGGGGGGGGG  CYSCGESGHFARECP++ R
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

BLAST of Sed0013765 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.5e-59
Identity = 154/199 (77.39%), Postives = 165/199 (82.91%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M+ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRR-GGYGFDGGSGGGYGGGRG 120
           GR KAVDVTGP E++VQGSR          GGGGGG RG R GGYGF+GG GG  GGGRG
Sbjct: 61  GRCKAVDVTGPGESSVQGSR----------GGGGGGERGSRGGGYGFNGGGGG--GGGRG 120

Query: 121 G-GDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGG--- 180
           G G  GGGYGGG GGGGGGG CFKCGE GHMARDC+Q G  GGGDRYGGGGGGGGGG   
Sbjct: 121 GYGRGGGGYGGGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGGN 180

Query: 181 CYSCGESGHFARECPNNAR 195
           CYSCGESGHFAR+C ++ R
Sbjct: 181 CYSCGESGHFARDCQSSGR 187

BLAST of Sed0013765 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 8.8e-57
Identity = 148/194 (76.29%), Postives = 160/194 (82.47%), Query Frame = 0

Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M+ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGG 120
           GR KA+DVTGP E++VQGSR     GGGG GGG  G RG  GGYGF+GG GGG GG    
Sbjct: 61  GRCKAIDVTGPGESSVQGSR-----GGGGGGGGERGSRG--GGYGFNGGGGGGRGG---- 120

Query: 121 GDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGGCYSCG 180
             YG G GGG GGGGGGG CFKCGE GHMARDC+Q G  GGGDRYGGGGGGGGG CYSCG
Sbjct: 121 --YGRG-GGGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGNCYSCG 180

Query: 181 ESGHFARECPNNAR 195
           ESGHFAR+C ++ R
Sbjct: 181 ESGHFARDCQSSGR 180

BLAST of Sed0013765 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43
Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWF  QKG+GFI+P  GG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGD 122
            KA++V+GP  A VQG+             GGGG  G RGG+    G GGG GGGRGGG 
Sbjct: 73  PKAIEVSGPDGAPVQGN------------SGGGGSSGGRGGF----GGGGGRGGGRGGGS 132

Query: 123 YGGGYG----GGRGGGGGGGACFKCGEAGHMARDCFQSG----GGGGGDRYGGGGGGGGG 182
           YGGGYG    GGRGGGGG  +CFKCGE GHMAR+C Q G    GGGGG RYG GGGGGGG
Sbjct: 133 YGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG 192

Query: 183 G----CYSCGESGHFAREC 190
           G    CYSCGESGHFAR+C
Sbjct: 193 GGGLSCYSCGESGHFARDC 195

BLAST of Sed0013765 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-42
Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           ER  G VKWF  QKG+GFI+PD GG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGG-GGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 122
            KA+DV+GP  A VQG+   G+ GG GG+GGG GGGR          GSGGGYGGG    
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGR----------GSGGGYGGG---- 128

Query: 123 DYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG---------------GGGGDRYG 182
             GGGYGG  GGG GG  C+KCGE GHMARDC + GG               GGGG  YG
Sbjct: 129 --GGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYG 188

Query: 183 G---GGGGGGGGCYSCGESGHFARECPNNAR 195
           G   GGGGGGG CYSCGESGHFAR+C +  R
Sbjct: 189 GGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

BLAST of Sed0013765 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0

Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R  GKV WFSD KGYGFI+PD GGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 121
           + KA++VT P   ++     +  G GG     G  G   +   G  GG   G GGGR  G
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG 127

Query: 122 DYGGGY---------------GGGRGGGGGGGA--CFKCGEAGHMARDCFQSGGGGGGDR 181
             G  Y               GGG  GGGGGG   C+ CGE GH+A+DC    GG GG+R
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC---RGGSGGNR 187

Query: 182 YGGGG--GGGGGGCYSCGESGHFARECPNNARG 196
           YGGGG  G GG GCY CG  GHFAR+C  N  G
Sbjct: 188 YGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGG 217

BLAST of Sed0013765 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0

Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R +GKV WF+  KGYGFI+PD G  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RAKAVDVTGPAEANVQ---GSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGG- 121
           + KAV+VT P   +++    SR  GA  GG  GG G    G  G    D G GGG GGG 
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGG--GGSGCYNCGELGHISKDCGIGGGGGGGE 127

Query: 122 ---RGG------GDYG--------GGYGGGRGG-GGGGGACFKCGEAGHMARDCFQSGGG 181
              RGG      GD G         G G  RG   GG   C+ CG+ GH+ARDC Q   G
Sbjct: 128 RRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 187

Query: 182 GGGDRYGGGGGGGGGGCYSCGESGHFAREC 190
            G  R  G   GG  GCY+CG+ GHFAR+C
Sbjct: 188 NGDQR--GAVKGGNDGCYTCGDVGHFARDC 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022928350.14.8e-6579.90glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain... [more]
XP_038888820.14.8e-6582.13glycine-rich protein 2-like [Benincasa hispida][more]
XP_023529790.18.1e-6579.90glycine-rich protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_011658593.11.8e-6480.37glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02... [more]
XP_022989065.11.8e-6479.33glycine-rich protein 2-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
P274844.5e-5069.23Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
Q388963.5e-4261.81Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
Q411888.5e-4158.29Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
Q94C691.9e-2450.70Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
O656391.5e-1648.57Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1ERG92.3e-6579.90glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S... [more]
A0A6J1JLC08.8e-6579.33glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=... [more]
A0A0A0K4M58.8e-6580.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1[more]
A0A6J1HY035.5e-5977.39glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=... [more]
A0A6J1GLV78.8e-5776.29glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT2G21060.12.5e-4361.81glycine-rich protein 2B [more]
AT4G38680.16.1e-4258.29glycine rich protein 2 [more]
AT2G17870.11.4e-2550.70cold shock domain protein 3 [more]
AT4G36020.11.0e-1748.57cold shock domain protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 28..37
score: 64.04
coord: 7..22
score: 63.69
coord: 43..61
score: 41.22
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 6..70
e-value: 6.0E-24
score: 83.7
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 4..70
score: 31.936636
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 5..70
e-value: 2.99069E-25
score: 91.101
IPR011129Cold shock domainSMARTSM00357csp_8coord: 6..71
e-value: 1.2E-24
score: 97.9
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 139..155
e-value: 3.4E-4
score: 29.9
coord: 175..191
e-value: 1.5E-5
score: 34.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 175..191
e-value: 2.0E-7
score: 30.8
coord: 139..155
e-value: 1.4E-7
score: 31.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 176..191
score: 11.317481
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 140..153
score: 11.020791
NoneNo IPR availableGENE3D2.40.50.140coord: 1..82
e-value: 1.3E-27
score: 97.8
NoneNo IPR availableGENE3D4.10.60.10coord: 172..195
e-value: 2.4E-7
score: 32.3
coord: 133..164
e-value: 3.1E-6
score: 28.7
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 3..192
NoneNo IPR availablePANTHERPTHR46565:SF6COLD SHOCK PROTEIN 1coord: 3..192
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 18..37
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..69
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 129..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013765.1Sed0013765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding