Sed0013765.1 (mRNA) Chayote v1

Overview


Name	Sed0013765.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	glycine-rich protein 2-like
Location	LG04: 46950993 .. 46952379 (-)
Sequence length	1387
RNA-Seq Expression	Sed0013765.1
Synteny	Sed0013765.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA

mRNA sequence

CTTAAAAATAAACATATAGCAATAAAAGAAATGGAAAATAGAAAATGAGACATTTTCGAAAAAAAAGAAGGAAAAAAACGAGTGAATTCCCAAAAGTACCCTTGGCCATTAAATTCCCGTTCGCAAATCCGACGGCGAAATGAAGCGTTCCAAGGCGGAGAAGAGGAAGAGCCCTGGCCGTCAGATCTGATCGGAAAGGCCCCGCCGCCGCAGAGAATCGGACGGTCAGGATGGAAGAACGCAACCCCACAAAATCACAAATGAGAAAAAAAGACGGGGCGGTCTTCCCGTTCCAATCTTTTCAATTTCACACAAAAAGTACGTTTTTCATTTTCTATATATAAAATCCAAAATTAGGGTTTCTGGGAGAGAAAATCGAAACCCCAAAAATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGATCGTGTCTTTGACTGATTGCTGGAATCTGGTGGTGTTTTGTTCTGTTTTTCGATCTTCGCCTTTCATCTCAGTTTTGATCTGCTGAGATCTGTAAGGTCATCTTTTAGCAGAATCTTAGTAGTAGGCTGTTCTTTTGTCTATGGATTCCACCAGTTTAGTTTATGTTTTTAGTGTGTTTTGGATATTTGATGATGAAATTGATGTTTGTTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATTCTTCCTTGATTCTCTGTTTCTGTAACTGTTGATACAAGTATTTTATATACAATGCCTTTTTCTGTTTTTGAATCAATGTGTTCCATATCTGACTTTCTTCTGTAATGGGTTTTCATTGCATCAATGTAATGTGGCATTACTTTTCTCTGGCA

Coding sequence (CDS)

ATGGCCGAAAGAGTGAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATCTCCCCCGATCTCGGCGGCGAAGATCTCTTCGTTCACCAATCCTCCATTAGATCCGACGGTTTCCGCAGCCTCGGCGTCGGTGAAGATGTTGAGTTCGTCATCGAGTCGGAGTCCGACGGCCGTGCCAAGGCCGTCGATGTCACCGGCCCTGCTGAGGCTAATGTGCAGGGTAGCCGTGCCGCCGGTGCAGGCGGAGGTGGTGGATATGGAGGCGGCGGCGGCGGCGGAAGAGGGAGACGTGGTGGCTACGGCTTTGATGGTGGTAGCGGTGGAGGTTATGGCGGAGGTCGCGGTGGCGGTGACTACGGTGGGGGGTATGGAGGAGGTCGCGGAGGGGGCGGCGGCGGCGGTGCTTGTTTTAAGTGTGGTGAGGCTGGGCATATGGCTAGAGACTGCTTCCAGAGTGGAGGCGGTGGCGGTGGTGATAGGTATGGCGGAGGCGGTGGCGGAGGCGGCGGTGGCTGCTATAGCTGTGGGGAATCTGGGCATTTTGCTAGAGAGTGCCCTAACAATGCCCGTGGATGA

Protein sequence

MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGGCYSCGESGHFARECPNNARG

Homology

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BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

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BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-65
Identity = 170/207 (82.13%), Postives = 180/207 (86.96%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           MAERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAG-------GGGGYGGGGGGGRGRR--GGYGFDGGSG 120
           GR+KAVDVTGP EA+VQGSR  G+G       GGGGYGGGGGGGRGRR  GGYGF+GGSG
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSG 120

Query: 121 ----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGG 180
               GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGDRY G
Sbjct: 121 GGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-G 180

Query: 181 GGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGNCYSCGESGHFARECPSSGR 204

[Close]

BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 8.1e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGTYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

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BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGG-----------GGGYGGGGGGGRGRR--GGYGFD 120
           GR+KAVDVTGP EA+VQGSR  G GG           GGGYGGGGGGGRGRR  GGYGF+
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSG----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG-GGGG 180
           GGSG    GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGG
Sbjct: 121 GGSGGGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGGGGGGGGGG--CYSCGESGHFARECPNNAR 195
           DRYGGGGGGGGGG  CYSCGESGHFARECP++ R
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of Sed0013765.1 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-64
Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY----G 180
             G  GG GGG YGGGYG G GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY    G
Sbjct: 121 GRGLYGGSGGGGYGGGYGSG-GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 207

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BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50
Identity = 144/208 (69.23%), Postives = 152/208 (73.08%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWFSDQKG+GFI+PD GGEDLFVHQS IRS+GFRSL  GE VEF +ES  DGR
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 63  AKAVDVTGPAEANVQGSRAAGAG----GGGGYGGG----GGGGRGRRGGY-GFDG--GSG 122
            KAVDVTGP  A VQG R  G G    GGGGYGGG    GGGGRG   GY G DG  G G
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 123 GGYGGGR----GGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY-G 182
           GGYGGG     GGG YGGG G G GG GGG  CFKCGE+GH ARDC QSGGGGGG R+ G
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGG 186

Query: 183 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGGGCY CGE GHFAREC +  R
Sbjct: 187 GGGGGGGGGCYKCGEDGHFARECTSGGR 214

[Close]

BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-42
Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWF  QKG+GFI+P  GG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGD 122
            KA++V+GP  A VQG+             GGGG  G RGG+    G GGG GGGRGGG 
Sbjct: 73  PKAIEVSGPDGAPVQGN------------SGGGGSSGGRGGF----GGGGGRGGGRGGGS 132

Query: 123 YGGGYG----GGRGGGGGGGACFKCGEAGHMARDCFQSG----GGGGGDRYGGGGGGGGG 182
           YGGGYG    GGRGGGGG  +CFKCGE GHMAR+C Q G    GGGGG RYG GGGGGGG
Sbjct: 133 YGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG 192

Query: 183 G----CYSCGESGHFAREC 190
           G    CYSCGESGHFAR+C
Sbjct: 193 GGGLSCYSCGESGHFARDC 195

[Close]

BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.5e-41
Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           ER  G VKWF  QKG+GFI+PD GG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGG-GGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 122
            KA+DV+GP  A VQG+   G+ GG GG+GGG GGGR          GSGGGYGGG    
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGR----------GSGGGYGGG---- 128

Query: 123 DYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG---------------GGGGDRYG 182
             GGGYGG  GGG GG  C+KCGE GHMARDC + GG               GGGG  YG
Sbjct: 129 --GGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYG 188

Query: 183 G---GGGGGGGGCYSCGESGHFARECPNNAR 195
           G   GGGGGGG CYSCGESGHFAR+C +  R
Sbjct: 189 GGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R  GKV WFSD KGYGFI+PD GGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 121
           + KA++VT P   ++     +  G GG     G  G   +   G  GG   G GGGR  G
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG 127

Query: 122 DYGGGY---------------GGGRGGGGGGGA--CFKCGEAGHMARDCFQSGGGGGGDR 181
             G  Y               GGG  GGGGGG   C+ CGE GH+A+DC    GG GG+R
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC---RGGSGGNR 187

Query: 182 YGGGG--GGGGGGCYSCGESGHFARECPNNARG 196
           YGGGG  G GG GCY CG  GHFAR+C  N  G
Sbjct: 188 YGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGG 217

[Close]

BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R +GKV WF+  KGYGFI+PD G  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RAKAVDVTGPAEANVQ---GSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGG- 121
           + KAV+VT P   +++    SR  GA  GG  GG G    G  G    D G GGG GGG 
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGG--GGSGCYNCGELGHISKDCGIGGGGGGGE 127

Query: 122 ---RGG------GDYG--------GGYGGGRGG-GGGGGACFKCGEAGHMARDCFQSGGG 181
              RGG      GD G         G G  RG   GG   C+ CG+ GH+ARDC Q   G
Sbjct: 128 RRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 187

Query: 182 GGGDRYGGGGGGGGGGCYSCGESGHFAREC 190
            G  R  G   GG  GCY+CG+ GHFAR+C
Sbjct: 188 NGDQR--GAVKGGNDGCYTCGDVGHFARDC 213

[Close]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.3e-65
Identity = 163/204 (79.90%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGG 180
             G  GG GGG YGGGYG   GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY GGGG
Sbjct: 121 GRGSYGGSGGGGYGGGYGS--GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGCYSCGESGHFARECPNNAR 195
           GGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65
Identity = 165/208 (79.33%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRS+GFRSLGVGEDVEF IE+E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYG-------GGGGGGRGRRGGYGFDGGSGG- 120
           GR+KAVDVTGP E++VQGSR  G GGGG YG       GGGGGGRGRRGGYGF+GGSGG 
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 --GYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRY----G 180
             G  GG GGG YGGGYG G GGGGGGGACFKCGEAGHMARDC+QSG  GGGDRY    G
Sbjct: 121 GRGLYGGSGGGGYGGGYGSG-GGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGGGGGCYSCGESGHFARECPNNAR 195
           GGGGGGGG CYSCGESGHFARECP++ R
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.8e-65
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE+ESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGG-----------GGGYGGGGGGGRGRR--GGYGFD 120
           GR+KAVDVTGP EA+VQGSR  G GG           GGGYGGGGGGGRGRR  GGYGF+
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSG----GGYGGGRGGGDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG-GGGG 180
           GGSG    GGYGGG GGG  GGGYGGG GGGGGGGACFKCGE GHMARDC+QSG  GGGG
Sbjct: 121 GGSGGGGRGGYGGG-GGGYGGGGYGGG-GGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGGGGGGGGGG--CYSCGESGHFARECPNNAR 195
           DRYGGGGGGGGGG  CYSCGESGHFARECP++ R
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.5e-59
Identity = 154/199 (77.39%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M+ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRR-GGYGFDGGSGGGYGGGRG 120
           GR KAVDVTGP E++VQGSR          GGGGGG RG R GGYGF+GG GG  GGGRG
Sbjct: 61  GRCKAVDVTGPGESSVQGSR----------GGGGGGERGSRGGGYGFNGGGGG--GGGRG 120

Query: 121 G-GDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGG--- 180
           G G  GGGYGGG GGGGGGG CFKCGE GHMARDC+Q G  GGGDRYGGGGGGGGGG   
Sbjct: 121 GYGRGGGGYGGGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGGN 180

Query: 181 CYSCGESGHFARECPNNAR 195
           CYSCGESGHFAR+C ++ R
Sbjct: 181 CYSCGESGHFARDCQSSGR 187

[Close]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 8.8e-57
Identity = 148/194 (76.29%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESD 60
           M+ERVSGKVKWFSDQKGYGFISP+ GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGG 120
           GR KA+DVTGP E++VQGSR     GGGG GGG  G RG  GGYGF+GG GGG GG    
Sbjct: 61  GRCKAIDVTGPGESSVQGSR-----GGGGGGGGERGSRG--GGYGFNGGGGGGRGG---- 120

Query: 121 GDYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGGGGGGDRYGGGGGGGGGGCYSCG 180
             YG G GGG GGGGGGG CFKCGE GHMARDC+Q G  GGGDRYGGGGGGGGG CYSCG
Sbjct: 121 --YGRG-GGGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGNCYSCG 180

Query: 181 ESGHFARECPNNAR 195
           ESGHFAR+C ++ R
Sbjct: 181 ESGHFARDCQSSGR 180

[Close]

BLAST of Sed0013765.1 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43
Identity = 123/199 (61.81%), Postives = 139/199 (69.85%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           +R  G VKWF  QKG+GFI+P  GG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGGD 122
            KA++V+GP  A VQG+             GGGG  G RGG+    G GGG GGGRGGG 
Sbjct: 73  PKAIEVSGPDGAPVQGN------------SGGGGSSGGRGGF----GGGGGRGGGRGGGS 132

Query: 123 YGGGYG----GGRGGGGGGGACFKCGEAGHMARDCFQSG----GGGGGDRYGGGGGGGGG 182
           YGGGYG    GGRGGGGG  +CFKCGE GHMAR+C Q G    GGGGG RYG GGGGGGG
Sbjct: 133 YGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG 192

Query: 183 G----CYSCGESGHFAREC 190
           G    CYSCGESGHFAR+C
Sbjct: 193 GGGLSCYSCGESGHFARDC 195

[Close]

BLAST of Sed0013765.1 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-42
Identity = 123/211 (58.29%), Postives = 140/211 (66.35%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDGR 62
           ER  G VKWF  QKG+GFI+PD GG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  AKAVDVTGPAEANVQGSRAAGAGGG-GGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 122
            KA+DV+GP  A VQG+   G+ GG GG+GGG GGGR          GSGGGYGGG    
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGR----------GSGGGYGGG---- 128

Query: 123 DYGGGYGGGRGGGGGGGACFKCGEAGHMARDCFQSGG---------------GGGGDRYG 182
             GGGYGG  GGG GG  C+KCGE GHMARDC + GG               GGGG  YG
Sbjct: 129 --GGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYG 188

Query: 183 G---GGGGGGGGCYSCGESGHFARECPNNAR 195
           G   GGGGGGG CYSCGESGHFAR+C +  R
Sbjct: 189 GGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Sed0013765.1 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 108/213 (50.70%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R  GKV WFSD KGYGFI+PD GGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RAKAVDVTGPAEANVQGSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGGRGGG 121
           + KA++VT P   ++     +  G GG     G  G   +   G  GG   G GGGR  G
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG 127

Query: 122 DYGGGY---------------GGGRGGGGGGGA--CFKCGEAGHMARDCFQSGGGGGGDR 181
             G  Y               GGG  GGGGGG   C+ CGE GH+A+DC    GG GG+R
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC---RGGSGGNR 187

Query: 182 YGGGG--GGGGGGCYSCGESGHFARECPNNARG 196
           YGGGG  G GG GCY CG  GHFAR+C  N  G
Sbjct: 188 YGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGG 217

[Close]

BLAST of Sed0013765.1 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 102/210 (48.57%), Postives = 120/210 (57.14%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPDLGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIESESDG 61
           A R +GKV WF+  KGYGFI+PD G  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RAKAVDVTGPAEANVQ---GSRAAGAGGGGGYGGGGGGGRGRRGGYGFDGGSGGGYGGG- 121
           + KAV+VT P   +++    SR  GA  GG  GG G    G  G    D G GGG GGG 
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGG--GGSGCYNCGELGHISKDCGIGGGGGGGE 127

Query: 122 ---RGG------GDYG--------GGYGGGRGG-GGGGGACFKCGEAGHMARDCFQSGGG 181
              RGG      GD G         G G  RG   GG   C+ CG+ GH+ARDC Q   G
Sbjct: 128 RRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 187

Query: 182 GGGDRYGGGGGGGGGGCYSCGESGHFAREC 190
            G  R  G   GG  GCY+CG+ GHFAR+C
Sbjct: 188 NGDQR--GAVKGGNDGCYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of Sed0013765.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928350.1	4.8e-65	79.90	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_038888820.1	4.8e-65	82.13	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_023529790.1	8.1e-65	79.90	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_011658593.1	1.8e-64	80.37	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_022989065.1	1.8e-64	79.33	glycine-rich protein 2-like [Cucurbita maxima]	[more]

BLAST of Sed0013765.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	4.5e-50	69.23	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	3.5e-42	61.81	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	8.5e-41	58.29	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	1.9e-24	50.70	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.5e-16	48.57	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of Sed0013765.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERG9	2.3e-65	79.90	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1JLC0	8.8e-65	79.33	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A0A0K4M5	8.8e-65	80.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A6J1HY03	5.5e-59	77.39	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=...	[more]
A0A6J1GLV7	8.8e-57	76.29	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of Sed0013765.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	2.5e-43	61.81	glycine-rich protein 2B	[more]
AT4G38680.1	6.1e-42	58.29	glycine rich protein 2	[more]
AT2G17870.1	1.4e-25	50.70	cold shock domain protein 3	[more]
AT4G36020.1	1.0e-17	48.57	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 28..37 score: 64.04 coord: 7..22 score: 63.69 coord: 43..61 score: 41.22
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 6.0E-24 score: 83.7
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.936636
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 2.99069E-25 score: 91.101
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 1.2E-24 score: 97.9
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 139..155 e-value: 3.4E-4 score: 29.9 coord: 175..191 e-value: 1.5E-5 score: 34.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 175..191 e-value: 2.0E-7 score: 30.8 coord: 139..155 e-value: 1.4E-7 score: 31.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 176..191 score: 11.317481
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 140..153 score: 11.020791
None	No IPR available	GENE3D	2.40.50.140		coord: 1..82 e-value: 1.3E-27 score: 97.8
None	No IPR available	GENE3D	4.10.60.10		coord: 172..195 e-value: 2.4E-7 score: 32.3 coord: 133..164 e-value: 3.1E-6 score: 28.7
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 3..192
None	No IPR available	PANTHER	PTHR46565:SF6	COLD SHOCK PROTEIN 1	coord: 3..192
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..69
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 129..193

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013765	Sed0013765	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013765.1-three_prime_utr	Sed0013765.1-three_prime_utr-LG04:46950993..46951402	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013765.1-exon	Sed0013765.1-exon-LG04:46950993..46952379	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013765.1-cds	Sed0013765.1-cds-LG04:46951403..46951990	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013765.1-five_prime_utr	Sed0013765.1-five_prime_utr-LG04:46951991..46952379	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013765.1	Sed0013765.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding