Sed0009986.1 (mRNA) Chayote v1

Overview


Name	Sed0009986.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	histone H4
Location	LG03: 2112960 .. 2116482 (-)
Sequence length	660
RNA-Seq Expression	Sed0009986.1
Synteny	Sed0009986.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGCCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTGTTGAGGGACAACATCCAAGGCATTACCAAGCCTGCAATTCGGCGATTGGCTCGCAGAGGCGGAGTGAAGCGAATCAGCGGCTTGATCTATGAGGAAACCAGAGGCGTGTTGAAGATCTTTCTTGAGAACGTGATTCGCGATGCGGTGACCTACACCGAGCACGCTCGGAGGAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGAGGCAGGGACGGACCTTGTACGGTTTCGGCGGTTAGGTTAGAGATCGCGATTGATTCTGGATATTCTCTTTAGATCTGGTTTCTTCTTGCTATTGCTGTTCAGATTTAGGATTTCTCTAATCTACTGTTCTATTGTTCAAATTCTGAAACGCTTACTTTGTTTAAAAAATATGAATTAATCTGATTTGGTTTCACTCCGTTCACTAATCTCATGTCTAATAATTGGCTTGGAAACAGAATTTGTTGCTATGGTGAAATAGAATTGATTTTGCAGTTTTTGTTAATTGTTTCGATCCGGAGAACTGGATTCAAGAACAGTTATGGCACTTTCTGTTGTTTCTGTTCTTGGAGGATTGGTAGCAAAAGCTTTGAACATCGTGAATTGACACTTAGGTTCAACTAATATTTTAAGGTGTGGCTTCTGTTAAAATTGTTTACACGAATAGAGCAGGGTCGCAGCTAAAGAGAGATTGAAAATTACAATGGTAATGAAGAGGAAGAAGAGGAAGAACGACACAATGATTTTACGTGGAAAACCCCTAAACAAATTAGGGTAAAAACCACGGCAGGATAGAAGAACTTTATTACAAAAATAGGAGTTCTGGCCTTTCTCTCTACAAAGAAACAACAAGCTTTCTTACAAAGAGAAAACACTCTCTATTTTTATCTCACAACCTCACTTTAGATGTGGGAAGTCTTGGGATGATTTGGGATGGTTTGCCAACAAATGACATAACCTATTTATAGCCTCCATAAACTTGGGCTCCAAGTATGATCCAATGGTCCACATTTTGCCTTGTAATCAAGTCAAATAAATGGCTAGGATTTTGCCACAACTTGGATTTGGATAAGGATGTCTAGATATTTCTTTGCAAGTTGAAGTTCTAGATTTTTCTTTGACCATCTAGGATAAATGATAAAATCTAGAGTTTTCTTTTGGCTATAACTTCTAGATTTTCTTTGGACCTAAATTCTCTTTTGTTGGGCCATAATATTTAACAATCTTCCACTTGGAGATTTGATTGATCCATCAATAAATCTCCACACCGTTCTTTCTTCCTTGCCATCTCCATGTTGCTTATGTTTCTGCTAGGCCATTCGCGGATCGACACCAATCAAACTTGTCACCATTGACTGCCTTGGTCAGATAATCTGCCAGGTTTTCTTTTGTATGAATTTTCTGCATATCCACTGTTCCTTCTTCCACTTTCTCACGAACAAAGTGGTACTGCACTCGAATATGTTTTGACTTGGAATGGAAAGCTGGATTCCTTGCAAGGTACAAGGCACTCTGATCGTCACAAAACAGAGAAATATTCTTCTTAGCGTGCTCGAGTTCATCCATTAACATTTTTAACCATACCGCTCTTTACTAGCTTGTGTAGCCGCAACATACTCTGCTTTACATTGTCGAGGTAGCCACAATCTGATCATTTTGAAACCCGACTTTATACTCCGCTAGCAAGAGTGAACACATATCCAGTGGTGGATTTGCTTTTATCAAAATCACCTGCATAATCTGAGTCAACATATCCTCTGACAATAAAGTCTGATCCTCCATAACATAATGCAACATCTATCGATCCTTTAATATATCTAAGGATCCTTTTTACAGCATTCCAATGCTCTCGACCAGATTCGCCATGTGCCGACTAACTACTCCCACTTTGCATGTGCAATGTCCGGTCCGGTACAAATCATGGCAAACATTAAACTTCCCACTTCTTGATGCATACGGTGCTCGAGACATCTCCATCCTCTCCGCTTCACCGCTAGGGCACATACTAGAGGATAATTTGAAATTAACAGAAAGAGGGGTAGAAATTGGCTTACGAGTCTTCCATGTTGAAGCGTCGTAAGACTTTCCTTAAATAGTTTCTCAGAGATAGCCAAATCTTTCTATTATTTCTGTCTCGGTGAATTTGCATCCCTGAATCTTGTTTGCTAGCCCCAAGTCCTTCATTTCAAACTCCCTAGCCAATCGAGCCTTCAATTCTTTAATACGATCTTTGTTGGGGCTGCTACCAACATGTCGTCAACATACAACAAACAAGATAATGAAATCTTTTTCACTAAACCTCTTGAAATATGCACAAGGGTCATTAAGTCTCATTGTATTCAAGGCTCATGATGAAGGAATCAAATCTCTTGTACCAACATCTCGCGCTGTTTGAGACCATACAGAGATTTGTTCAACCTCAAACCAAGTTCTCTTTTCCTTGTTCTTCAAAACCTTACGGTTTGGAGCATATAGATTTCTTCTTCAAGATCACCATGGAGAAATGCGCTTTTACATCTAATCGCTCCCGGATGTAAATCAAATGTAGCACACATTGCTAAGACTATTCTAACGATGAGTAAGTCGAACTCTTCGGAGAAAAGATTTCATTGAAGTCGATACCTTCTTTACGAGCATATCCTTTTACCACCAATCTTGCGATACCGCTCCACTTGATCATCATTGTTGCGCTTGATCTTATATACCCATTTGTTACCAATGGGCTTTCTTCCCTGTGGTAGCGTTACAAGTTCCCAAGTCTTGTTCTTATGAAGAGCTTCCATTTCTTCATGCATAGTCATCATCCATCGAGCGAAGATCTCAACTAGTCATTGCCTCTTGGAATGTTAATGGCTCTCCATCCTCGCTTAGAAGACAATATGCAATGTTACTCTCCATAATATAATCGGGCCGCCAATCGGGTGGTTTTGTCGTTCGGATAGAACGGCGAGTCTCTTGTGACTCAACCGGATCTTGTATCTCGTGTGTTGGTTCGACTTGAGTGGTCATCTTCATATTCTTTCTCCACATGTACCGTTGTAGTCTCTGAGCTTTCATTGACAAGTGCTATCATTTGCTATCTGTTTCTTATCTTCCATGAAGATCACATCCTGCGATGATAACCTTGTGGGAAGTGGGATCCCACAGCGATACCCTTTCACACCATCAGCGTACCTAAGAATAAACATTTTCTGGATTTTGGATCCGCTTTTGTAGTTTCTTGGGTATTGTACATCACGTACTGCTGGACTTCCAAATATATGGAGGTTTGAATAATCAACAAGCTTACAGGTCCATCTCTGCATTGGTGTCTTCAACTCAATTGCGATTGATGGAGCACGATTCACTACATAACAAAGTATTGGTCGCTTCGCGCGAAATGATTTGTCCAAGCCTGCAGCTCCTAACATTGCTCTTGTTCTCTCTAACAAGGTTCTATTCATCCGCTCTGCCACTCCATTTCTTTGA

mRNA sequence

ATGTCAGGCCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTGTTGAGGGACAACATCCAAGGCATTACCAAGCCTGCAATTCGGCGATTGGCTCGCAGAGGCGGAGTGAAGCGAATCAGCGGCTTGATCTATGAGGAAACCAGAGGCGTGTTGAAGATCTTTCTTGAGAACGTGATTCGCGATGCGGTGACCTACACCGAGCACGCTCGGAGGAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGAGGCAGGGACGGACCTTTGGTACTGCACTCGAATATGTTTTGACTTGGAATGGAAAGCTGGATTCCTTGCAAGGTACAAGGCACTCTGATCGATCCTTTTTACAGCATTCCAATGCTCTCGACCAGATTCGCCATGTGCCGACTAACTACTCCCACTTTGCATGTGCAATGTCCGCATATCCTTTTACCACCAATCTTGCGATACCGCTCCACTTGATCATCATTGTTGCGCTTGATCTTATATACCCATTTGTTACCAATGGGCTTTCTTCCCTTATTGGTCGCTTCGCGCGAAATGATTTGTCCAAGCCTGCAGCTCCTAACATTGCTCTTGTTCTCTCTAACAAGGTTCTATTCATCCGCTCTGCCACTCCATTTCTTTGA

Coding sequence (CDS)

ATGTCAGGCCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTGTTGAGGGACAACATCCAAGGCATTACCAAGCCTGCAATTCGGCGATTGGCTCGCAGAGGCGGAGTGAAGCGAATCAGCGGCTTGATCTATGAGGAAACCAGAGGCGTGTTGAAGATCTTTCTTGAGAACGTGATTCGCGATGCGGTGACCTACACCGAGCACGCTCGGAGGAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGAGGCAGGGACGGACCTTTGGTACTGCACTCGAATATGTTTTGACTTGGAATGGAAAGCTGGATTCCTTGCAAGGTACAAGGCACTCTGATCGATCCTTTTTACAGCATTCCAATGCTCTCGACCAGATTCGCCATGTGCCGACTAACTACTCCCACTTTGCATGTGCAATGTCCGCATATCCTTTTACCACCAATCTTGCGATACCGCTCCACTTGATCATCATTGTTGCGCTTGATCTTATATACCCATTTGTTACCAATGGGCTTTCTTCCCTTATTGGTCGCTTCGCGCGAAATGATTTGTCCAAGCCTGCAGCTCCTAACATTGCTCTTGTTCTCTCTAACAAGGTTCTATTCATCCGCTCTGCCACTCCATTTCTTTGA

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGTALEYVLTWNGKLDSLQGTRHSDRSFLQHSNALDQIRHVPTNYSHFACAMSAYPFTTNLAIPLHLIIIVALDLIYPFVTNGLSSLIGRFARNDLSKPAAPNIALVLSNKVLFIRSATPFL

Homology

[Close]

BLAST of Sed0009986.1 vs. NCBI nr
Match: XP_020580277.1 (uncharacterized protein LOC110024573 [Phalaenopsis equestris])

HSP 1 Score: 191.8 bits (486), Expect = 6.2e-45
Identity = 102/115 (88.70%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKL 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   FG  L ++  W+  L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGGLAFLFLWSFNL 115

[Close]

BLAST of Sed0009986.1 vs. NCBI nr
Match: KAE8646972.1 (hypothetical protein Csa_021021 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-44
Identity = 116/174 (66.67%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT-FGTALEYVLTWNGKLDSLQGTR 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT +G  + ++   +G    L+G +
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVFFLFKIDGGSAVLKGLK 120

Query: 121 HSDRSFL----QHSNALDQIRHVPTNYSHFACAMSA-YPF--TTNLAIPLHLII 167
            S R FL    Q  +   ++ HV   +   AC+    +P+  TT++    H II
Sbjct: 121 -SRRPFLIGKKQEDSMSSEVEHVGI-WCRGACSFGVPFPWLRTTSVNYSFHKII 172

[Close]

BLAST of Sed0009986.1 vs. NCBI nr
Match: KAG6485895.1 (hypothetical protein ZIOFF_054462 [Zingiber officinale])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-44
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKLDSLQG 119
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   FG  L  +    G+LD ++ 
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRLVALARKIGRLDQVRK 120

[Close]

BLAST of Sed0009986.1 vs. NCBI nr
Match: KAG6411252.1 (hypothetical protein SASPL_129330 [Salvia splendens])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-44
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGTALEYVLTWNGKL 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT     ++ + W G L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL-YGFDFAVNWKGDL 111

[Close]

BLAST of Sed0009986.1 vs. NCBI nr
Match: XP_022133641.1 (uncharacterized protein LOC111006180 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-44
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 13  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 72

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKL-DSLQ 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   FG +  Y  T + +L DS  
Sbjct: 73  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGASRHYFTTSDSQLPDSTN 132

[Close]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL
Match: A0A6J1BVP5 (Histone H4 OS=Momordica charantia OX=3673 GN=LOC111006180 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.6e-45
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 13  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 72

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKL-DSLQ 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   FG +  Y  T + +L DS  
Sbjct: 73  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGASRHYFTTSDSQLPDSTN 132

[Close]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL
Match: A0A4D9BMK5 (Histone H4 OS=Salvia splendens OX=180675 GN=Saspl_018762 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.6e-45
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGTALEYVLTWNGKL 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT     ++ + W G L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL-YGFDFAVNWKGDL 111

[Close]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL
Match: A0A0E0ECW1 (Histone H4 OS=Oryza meridionalis OX=40149 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 8.7e-45
Identity = 104/126 (82.54%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKLDSLQG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   FG  +  +   N   D++  
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGRGVLKIFLENVIRDAVTY 120

Query: 121 TRHSDR 124
           T H+ R
Sbjct: 121 TEHARR 126

[Close]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL
Match: A0A553NPY7 (Histone H4 OS=Tigriopus californicus OX=6832 GN=TCAL_03755 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 104/132 (78.79%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGKLDSLQG 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT   FG  L  +++  GK   ++G
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGEYLSEIMSGRGKGGKVKG 120

Query: 121 --TRHSDRSFLQ 128
                S+R+ LQ
Sbjct: 121 KAKSRSNRAGLQ 132

[Close]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL
Match: A0A6P5LF57 (Histone H4 OS=Phascolarctos cinereus OX=38626 GN=LOC110216660 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 100/114 (87.72%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---FGTALEYVLTWNGK 112
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT   FG  L  +++  GK
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGCLAVIMSGRGK 114

[Close]

BLAST of Sed0009986.1 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of Sed0009986.1 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 98
          IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct: 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

The following BLAST results are available for this feature:

BLAST of Sed0009986.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020580277.1	6.2e-45	88.70	uncharacterized protein LOC110024573 [Phalaenopsis equestris]	[more]
KAE8646972.1	1.1e-44	66.67	hypothetical protein Csa_021021 [Cucumis sativus]	[more]
KAG6485895.1	1.4e-44	85.95	hypothetical protein ZIOFF_054462 [Zingiber officinale]	[more]
KAG6411252.1	1.4e-44	89.29	hypothetical protein SASPL_129330 [Salvia splendens]	[more]
XP_022133641.1	1.4e-44	84.68	uncharacterized protein LOC111006180 [Momordica charantia]	[more]

BLAST of Sed0009986.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	4.4e-46	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	4.4e-46	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	4.4e-46	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	4.4e-46	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	4.4e-46	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Sed0009986.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVP5	6.6e-45	84.68	Histone H4 OS=Momordica charantia OX=3673 GN=LOC111006180 PE=3 SV=1	[more]
A0A4D9BMK5	6.6e-45	89.29	Histone H4 OS=Salvia splendens OX=180675 GN=Saspl_018762 PE=3 SV=1	[more]
A0A0E0ECW1	8.7e-45	82.54	Histone H4 OS=Oryza meridionalis OX=40149 PE=3 SV=1	[more]
A0A553NPY7	1.1e-44	78.79	Histone H4 OS=Tigriopus californicus OX=6832 GN=TCAL_03755 PE=3 SV=1	[more]
A0A6P5LF57	1.5e-44	87.72	Histone H4 OS=Phascolarctos cinereus OX=38626 GN=LOC110216660 PE=3 SV=1	[more]

BLAST of Sed0009986.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	3.2e-47	100.00	Histone superfamily protein	[more]
AT1G07820.1	3.2e-47	100.00	Histone superfamily protein	[more]
AT1G07820.2	3.2e-47	100.00	Histone superfamily protein	[more]
AT2G28740.1	3.2e-47	100.00	histone H4	[more]
AT3G45930.1	3.2e-47	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 20..39 score: 93.38 coord: 62..76 score: 95.1 coord: 89..100 score: 73.04 coord: 77..89 score: 90.05 coord: 5..16 score: 95.59 coord: 40..60 score: 93.56
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..98 e-value: 1.97478E-47 score: 149.188
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 39..97 e-value: 6.7E-8 score: 32.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..100 e-value: 6.5E-54 score: 182.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..97
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..98
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..98
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0009986	Sed0009986	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0009986.1-exon	Sed0009986.1-exon-LG03:2112960..2113068	exon
Sed0009986.1-exon	Sed0009986.1-exon-LG03:2113694..2113793	exon
Sed0009986.1-exon	Sed0009986.1-exon-LG03:2114522..2114605	exon
Sed0009986.1-exon	Sed0009986.1-exon-LG03:2114910..2114983	exon
Sed0009986.1-exon	Sed0009986.1-exon-LG03:2116190..2116482	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0009986.1-cds	Sed0009986.1-cds-LG03:2112960..2113068	CDS
Sed0009986.1-cds	Sed0009986.1-cds-LG03:2113694..2113793	CDS
Sed0009986.1-cds	Sed0009986.1-cds-LG03:2114522..2114605	CDS
Sed0009986.1-cds	Sed0009986.1-cds-LG03:2114910..2114983	CDS
Sed0009986.1-cds	Sed0009986.1-cds-LG03:2116190..2116482	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0009986.1	Sed0009986.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity