Sed0003000.1 (mRNA) Chayote v1

Overview
NameSed0003000.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionPeptidase M50 family protein
LocationLG03: 15572072 .. 15576191 (-)
Sequence length3034
RNA-Seq ExpressionSed0003000.1
SyntenySed0003000.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATAAAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAAAAAAAATACAGAGCTTCAGAATTAAATTAGGGTTAGAAAAGTCTCCTCTTCTCAGATAAATTTACAAACTCACCCATATCATAAGGTTGCTGGAATGTCCCACATCGAAAATTTTGATAGAAGAAGCACGCTACTTAAACGGAGAGATGAAGGAGGAAAAGGAAAGACCTTACTTGAACAGGATCTGTTCTATAGGTTGAATTAGTGTGTCCTTGAGTTTCAAGGGTTAGGGGTCGAAAGTCATAGTCTGATGGTTGAACCACTGCCTTGTGGCTAGAGCGTGAATAACGGCCCATGGGCTCTGCTCCTGAAGCTGTAGATGATCGTTATTGGCAGGGCTTGTCCTATCGGGATGGTTGCAAGGTGGTCTGATAGACTTCTATAATAGACTCCTCTTTTTGTGCCTTCTCTTTGATTGTTCTTTTTTTTCAAGCTTCTTTGTATCTTTGTTATACATTAGTGATTTATGGGGTTTGTTGCATTGGTGGGTATTTGTTTTGTGCACATAAGGTGTTTGATGATATGTCTCTCAATCTTTGTTTGCCCCTATTGATGTTTGTCTGTTTATTTTTGTTATGTTTTTCCTCTAAATATTTGATTGCAAGCAACAGTGTTGTTGCTCTCTTTTTCATTCTTCTAATTTGAAGAACTCAAGTGAGCTTTTTTATTTCCATGGTGCTACCTGCTACTGTTTTAAGCTTATCAACATTTCTATTCATTGTCTCCATGCTTTCGCCACACCAACTATACATTTTTCATTTTTTCTATGCATTGAGAGGGAGGCTGAATTATTAGGAGCTTTCGACCTCAAGGTTCCATTGAGAGGATTTGGAGCAGTTTTATTGAAGATCCAAGGCTCCAGGTTCGTGTAGGCCTAATATTCGAGAGTTATACTTTTGATCATTTCAAGGGTCTCTACCTAATACAATTATTTTACCCTTTCCAAGTTTCACCTATATTTTTTTACGAAAATATCTCTCCTTCAAATAGTACTCCTCCATGTAAGGGAGGAATTGTTCTTCGCCCTTAAAACATTTATGTTTACAATTTCAAATAATTAAAATCCTTACCATTGAATAACAAGTCGTTGTAGTATAGTGGTAAGTATTCTTGCTTGTCACGCGGGTGACCTGAGTTCGATCCCCGGCAACGACGTCCCATTTTTTATTTCCTATCATTAGTTTTATGTACCTAAGGTGCTTGATGATATGTCTCCAAAATTTATGAGAAACTAACATACACTACTTTTTTCTATCCCCCACATTGCTGCCATAGTGAAATGTCGAATCGAAATTGAGGTGGGTTTGATTTTCTCTTTTATTTTTATATTTTCTTGTTAAATTGAACAAGTTGTACTGGGCTTTTTTGTTTAATCTTTGAAATTGATTACAAGAATATATGTTGGTTGTTTGATTGTTGTGGCTTCTTTTCCATTCTTGTTCTAAGGAGATATCATCCAAGATATGAGTTATCTGATTTTGTTTATGTTCAGAATGAAACAGTTGGGTGTTGCAGAAAGAAGTCTCGGAATCCGGTCCAACAAAACTCTGTCTATATGCTATTGCTTTGTGGAGTTACGAATTGCATCTCAGGTAGGTACCTACTTCTACAACTTTCGAGATCAGATAGAGTGTGAAAAATAAACTTTATTTGATGAATTCACAAAGTGATAGCTAAATATGCAATATTGTTCACATGTTCTTATGTCGTGCTTGTAACACTCACTTTTCCACATGCATTTCATTACTTCATAATTGTGTATGTATATCCTTATATTGTTGTTCATACATTATTAACTTATCACATTTGAAGTAAATCGTTTACCGTATCTCATTGACCTGGACAGATCAACCGTCTTCTTCGGGCGGTAGTGAAATACTTCACAGATTCAAAAGCTGTTGAACCCCACCAGTTATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATGTGAGTGAAATCTTTTATTTGTCACTTTCCACTTTTCTATACTGGAATTGTGGAAGGTTAGGAGTAAAATTGTTTTTGAGGGGGAAATTGATGAGGATGTGAGGGAGACCAACAGTGTTTGTTAACTACTTCTATTTGGATTATAGATTGTGTTGTATCCTATTCAGTACTTCTCTTACCATTTGTCTTTTTTGTTGGACAGTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGACTTCGATTAGGCGTCTATATCTTATCTACTAGCGTGTTTTTTTTTATCCAAAGATTATACTTCTAGTCAATTTAAAAGTCTCTATTTAGAACCATTCTTTTATCGTTTCTAATTTTACGTCTATATCCTATGAAGAATAGATCTCTTCCTCAAATATTACTCCTTCATGCAAAACCTCCAAAAGAGGGATTGTTCTTCATGCAGGATCTTAAAAAAAATTATGTTTGAAGTTGCAAAAAGTTAAAATCCTTTCTGTTGTAGTATAGTGGTAAGTATTCTTGCCTGTCATGTGGGTGACTTGGGTTCATTCCTTTGCAATGGCGTTTGTTTTTTCTTTCCTGCTTTAAACTTGATTTATTAGACACAAAATAGAAAATAGATATTTATTTGTTGAATTGTGAATCACATATGTGTTACTATGGTTAAATACCATGGTTAGTTGTGAGTTGGGTTAGGTTAGTTTTGACCTATTTCTAGAGAGTGTGTATATTAGTATATAAAGCATCTTATGTGCCAAAGGGGTGGTGCGGTGGTCGAAAGCTTGAATTTTGAAAGTTTGCTCCCCTTAAGCTCCGTGACACACACTAGATGATTGTTCTCACAAGGCAGTCTGACAGACTTCTATAATCATTTTTTTTTTCTTCTATAATCTCCTCATGAGGATTCATTTATTTGTGTGGATTTTGACCATAGGAAAAATAAGAATTGGGATCTTTTGCAAATGTGAAGATTAAATCATTTTGGTTGTTTGTTTTGCAATTACAATGATGAAAGTGTAGATCATACTGTATAGTTCTTTTTTCAAAAGATGTGTGATGTAAATGCTGTTTGGCGTTCTGTGGTCCATCCATAAGAAGTGATGCATCTTATAATGGGTTATTTTTCATGCAAAAGGATCAAAGGAAGTTACTTTGGAAGTTTGTTATCCATAACAATTTCCCTATATACATGTAGGAAAATTGCCATGGATAGTATTTCTTAGGCCACATATAATTATAACATTTTTCTTAAAATATTTTGTTTATAGGAGGTTTTGATTTCATTTTAAAAAAAAATTCCCATTTTACCCCTTTCTTCCGCGAACTAATTGAATCTAGTATCAAACTAATTAAAGGCTCATCAAACTAAAACTGATTGAATCTATCGCTGAAAATTGATTGAAGTTTGGGCATTTTGGTCATTTTACCATGGCCACCCCATTATTTTGCTATTTATGAAATATTTTTAAAAAAAGTGCTATATTGATGGTATGTTCTTTGGTTTGTTTTGCCATACATGTAAAATCTCCATATATATATATAAAGAAACAAAAATATTTTCATTTATAAAAATAAAAGTGTCACATAGATTGTGAACCAAAGTTGAGTCTTTTTTACCTTGAGAAAATATGGTAAATACAAATATTGATCTCTCAAGAAGTTGAACATCCAACTTTAAGTCCTAAAAGGGAACACTTTTACATTCGAGAGATTATCTCATGAATCAGCTATACATCTGGAAGAAAAGTAATCATATGCTGAGGAAATTTCATTA

mRNA sequence

CTCCATAAAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAAAAAAAATACAGAGCTTCAGAATTAAATTAGGGTTAGAAAAGTCTCCTCTTCTCAGATAAATTTACAAACTCACCCATATCATAAGGTTGCTGGAATGTCCCACATCGAAAATTTTGATAGAAGAAGCACGCTACTTAAACGGAGAGATGAAGGAGGAAAAGGAAAGACCTTACTTGAACAGGATCTGTTCTATAGGTTGAATTAGTGTGTCCTTGAGTTTCAAGGGTTAGGGGTCGAAAGTCATAGTCTGATGGTTGAACCACTGCCTTGTGGCTAGAGCGTGAATAACGGCCCATGGGCTCTGCTCCTGAAGCTGTAGATGATCGTTATTGGCAGGGCTTGTCCTATCGGGATGGTTGCAAGGTGGTCTGATAGACTTCTATAATAGACTCCTCTTTTTGTGCCTTCTCTTTGATTGTTCTTTTTTTTCAAGCTTCTTTGTATCTTTGTTATACATTAGTGATTTATGGGGTTTGTTGCATTGGTGGGTATTTGTTTTGTGCACATAAGGTGTTTGATGATATGTCTCTCAATCTTTGTTTGCCCCTATTGATGTTTGTCTGTTTATTTTTGTTATGTTTTTCCTCTAAATATTTGATTGCAAGCAACAGTGTTGTTGCTCTCTTTTTCATTCTTCTAATTTGAAGAACTCAAGTGAGCTTTTTTATTTCCATGGTGCTACCTGCTACTGTTTTAAGCTTATCAACATTTCTATTCATTGTCTCCATGCTTTCGCCACACCAACTATACATTTTTCATTTTTTCTATGCATTGAGAGGGAGGCTGAATTATTAGGAGCTTTCGACCTCAAGGTTCCATTGAGAGGATTTGGAGCAGTTTTATTGAAGATCCAAGGCTCCAGAATGAAACAGTTGGGTGTTGCAGAAAGAAGTCTCGGAATCCGGTCCAACAAAACTCTGTCTATATGCTATTGCTTTGTGGAGTTACGAATTGCATCTCAGATCAACCGTCTTCTTCGGGCGGTAGTGAAATACTTCACAGATTCAAAAGCTGTTGAACCCCACCAGTTATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGACTTCGATTAGGCGTCTATATCTTATCTACTAGCGTGTTTTTTTTTATCCAAAGATTATACTTCTAGTCAATTTAAAAGTCTCTATTTAGAACCATTCTTTTATCGTTTCTAATTTTACGTCTATATCCTATGAAGAATAGATCTCTTCCTCAAATATTACTCCTTCATGCAAAACCTCCAAAAGAGGGATTGTTCTTCATGCAGGATCTTAAAAAAAATTATGTTTGAAGTTGCAAAAAGTTAAAATCCTTTCTGTTGTAGTATAGTGGTAAGTATTCTTGCCTGTCATGTGGGTGACTTGGGTTCATTCCTTTGCAATGGCGTTTGTTTTTTCTTTCCTGCTTTAAACTTGATTTATTAGACACAAAATAGAAAATAGATATTTATTTGTTGAATTGTGAATCACATATGTGTTACTATGGTTAAATACCATGGTTAGTTGTGAGTTGGGTTAGGTTAGTTTTGACCTATTTCTAGAGAGTGTGTATATTAGTATATAAAGCATCTTATGTGCCAAAGGGGTGGTGCGGTGGTCGAAAGCTTGAATTTTGAAAGTTTGCTCCCCTTAAGCTCCGTGACACACACTAGATGATTGTTCTCACAAGGCAGTCTGACAGACTTCTATAATCATTTTTTTTTTCTTCTATAATCTCCTCATGAGGATTCATTTATTTGTGTGGATTTTGACCATAGGAAAAATAAGAATTGGGATCTTTTGCAAATGTGAAGATTAAATCATTTTGGTTGTTTGTTTTGCAATTACAATGATGAAAGTGTAGATCATACTGTATAGTTCTTTTTTCAAAAGATGTGTGATGTAAATGCTGTTTGGCGTTCTGTGGTCCATCCATAAGAAGTGATGCATCTTATAATGGGTTATTTTTCATGCAAAAGGATCAAAGGAAGTTACTTTGGAAGTTTGTTATCCATAACAATTTCCCTATATACATGTAGGAAAATTGCCATGGATAGTATTTCTTAGGCCACATATAATTATAACATTTTTCTTAAAATATTTTGTTTATAGGAGGTTTTGATTTCATTTTAAAAAAAAATTCCCATTTTACCCCTTTCTTCCGCGAACTAATTGAATCTAGTATCAAACTAATTAAAGGCTCATCAAACTAAAACTGATTGAATCTATCGCTGAAAATTGATTGAAGTTTGGGCATTTTGGTCATTTTACCATGGCCACCCCATTATTTTGCTATTTATGAAATATTTTTAAAAAAAGTGCTATATTGATGGTATGTTCTTTGGTTTGTTTTGCCATACATGTAAAATCTCCATATATATATATAAAGAAACAAAAATATTTTCATTTATAAAAATAAAAGTGTCACATAGATTGTGAACCAAAGTTGAGTCTTTTTTACCTTGAGAAAATATGGTAAATACAAATATTGATCTCTCAAGAAGTTGAACATCCAACTTTAAGTCCTAAAAGGGAACACTTTTACATTCGAGAGATTATCTCATGAATCAGCTATACATCTGGAAGAAAAGTAATCATATGCTGAGGAAATTTCATTA

Coding sequence (CDS)

ATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGA

Protein sequence

MEILFPFVDYALPLAYGVLLGVLLFHLQSILSDQIGAEEELISFGNRYDLIPLIPDANGTFSTRSLMKTFEAQSMSLTNSLYNDIWKGKFRKKVWHLYTSISLWKKQYLYQITIEWILSRTSRCYEHTLKLFHALGVNLHPDD
Homology
[Close]
BLAST of Sed0003000.1 vs. TAIR 10
Match: AT5G35220.1 (Peptidase M50 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.3e-04
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MEILFPFVDYALPLAYGVLLGVLLFH 27
           ME+L+PFVD ALPLAYGV LG+LLFH
Sbjct: 287 MELLYPFVDAALPLAYGV-LGILLFH 311

The following BLAST results are available for this feature:
BLAST of Sed0003000.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35220.16.3e-0480.77Peptidase M50 family protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0003000Sed0003000gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0003000.1-exonSed0003000.1-exon-LG03:15572072..15573958exon
Sed0003000.1-exonSed0003000.1-exon-LG03:15574161..15574306exon
Sed0003000.1-exonSed0003000.1-exon-LG03:15574561..15574660exon
Sed0003000.1-exonSed0003000.1-exon-LG03:15575291..15576191exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0003000.1-three_prime_utrSed0003000.1-three_prime_utr-LG03:15572072..15573604three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0003000.1-cdsSed0003000.1-cds-LG03:15573605..15573958CDS
Sed0003000.1-cdsSed0003000.1-cds-LG03:15574161..15574238CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0003000.1-five_prime_utrSed0003000.1-five_prime_utr-LG03:15574239..15574306five_prime_UTR
Sed0003000.1-five_prime_utrSed0003000.1-five_prime_utr-LG03:15574561..15574660five_prime_UTR
Sed0003000.1-five_prime_utrSed0003000.1-five_prime_utr-LG03:15575291..15576191five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0003000.1Sed0003000.1-proteinpolypeptide