Sed0003000 (gene) Chayote v1

Overview
NameSed0003000
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPeptidase M50 family protein
LocationLG03: 15572072 .. 15576191 (-)
RNA-Seq ExpressionSed0003000
SyntenySed0003000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATAAAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAAAAAAAATACAGAGCTTCAGAATTAAATTAGGGTTAGAAAAGTCTCCTCTTCTCAGATAAATTTACAAACTCACCCATATCATAAGGTTGCTGGAATGTCCCACATCGAAAATTTTGATAGAAGAAGCACGCTACTTAAACGGAGAGATGAAGGAGGAAAAGGAAAGACCTTACTTGAACAGGATCTGTTCTATAGGTTGAATTAGTGTGTCCTTGAGTTTCAAGGGTTAGGGGTCGAAAGTCATAGTCTGATGGTTGAACCACTGCCTTGTGGCTAGAGCGTGAATAACGGCCCATGGGCTCTGCTCCTGAAGCTGTAGATGATCGTTATTGGCAGGGCTTGTCCTATCGGGATGGTTGCAAGGTGGTCTGATAGACTTCTATAATAGACTCCTCTTTTTGTGCCTTCTCTTTGATTGTTCTTTTTTTTCAAGCTTCTTTGTATCTTTGTTATACATTAGTGATTTATGGGGTTTGTTGCATTGGTGGGTATTTGTTTTGTGCACATAAGGTGTTTGATGATATGTCTCTCAATCTTTGTTTGCCCCTATTGATGTTTGTCTGTTTATTTTTGTTATGTTTTTCCTCTAAATATTTGATTGCAAGCAACAGTGTTGTTGCTCTCTTTTTCATTCTTCTAATTTGAAGAACTCAAGTGAGCTTTTTTATTTCCATGGTGCTACCTGCTACTGTTTTAAGCTTATCAACATTTCTATTCATTGTCTCCATGCTTTCGCCACACCAACTATACATTTTTCATTTTTTCTATGCATTGAGAGGGAGGCTGAATTATTAGGAGCTTTCGACCTCAAGGTTCCATTGAGAGGATTTGGAGCAGTTTTATTGAAGATCCAAGGCTCCAGGTTCGTGTAGGCCTAATATTCGAGAGTTATACTTTTGATCATTTCAAGGGTCTCTACCTAATACAATTATTTTACCCTTTCCAAGTTTCACCTATATTTTTTTACGAAAATATCTCTCCTTCAAATAGTACTCCTCCATGTAAGGGAGGAATTGTTCTTCGCCCTTAAAACATTTATGTTTACAATTTCAAATAATTAAAATCCTTACCATTGAATAACAAGTCGTTGTAGTATAGTGGTAAGTATTCTTGCTTGTCACGCGGGTGACCTGAGTTCGATCCCCGGCAACGACGTCCCATTTTTTATTTCCTATCATTAGTTTTATGTACCTAAGGTGCTTGATGATATGTCTCCAAAATTTATGAGAAACTAACATACACTACTTTTTTCTATCCCCCACATTGCTGCCATAGTGAAATGTCGAATCGAAATTGAGGTGGGTTTGATTTTCTCTTTTATTTTTATATTTTCTTGTTAAATTGAACAAGTTGTACTGGGCTTTTTTGTTTAATCTTTGAAATTGATTACAAGAATATATGTTGGTTGTTTGATTGTTGTGGCTTCTTTTCCATTCTTGTTCTAAGGAGATATCATCCAAGATATGAGTTATCTGATTTTGTTTATGTTCAGAATGAAACAGTTGGGTGTTGCAGAAAGAAGTCTCGGAATCCGGTCCAACAAAACTCTGTCTATATGCTATTGCTTTGTGGAGTTACGAATTGCATCTCAGGTAGGTACCTACTTCTACAACTTTCGAGATCAGATAGAGTGTGAAAAATAAACTTTATTTGATGAATTCACAAAGTGATAGCTAAATATGCAATATTGTTCACATGTTCTTATGTCGTGCTTGTAACACTCACTTTTCCACATGCATTTCATTACTTCATAATTGTGTATGTATATCCTTATATTGTTGTTCATACATTATTAACTTATCACATTTGAAGTAAATCGTTTACCGTATCTCATTGACCTGGACAGATCAACCGTCTTCTTCGGGCGGTAGTGAAATACTTCACAGATTCAAAAGCTGTTGAACCCCACCAGTTATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATGTGAGTGAAATCTTTTATTTGTCACTTTCCACTTTTCTATACTGGAATTGTGGAAGGTTAGGAGTAAAATTGTTTTTGAGGGGGAAATTGATGAGGATGTGAGGGAGACCAACAGTGTTTGTTAACTACTTCTATTTGGATTATAGATTGTGTTGTATCCTATTCAGTACTTCTCTTACCATTTGTCTTTTTTGTTGGACAGTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGACTTCGATTAGGCGTCTATATCTTATCTACTAGCGTGTTTTTTTTTATCCAAAGATTATACTTCTAGTCAATTTAAAAGTCTCTATTTAGAACCATTCTTTTATCGTTTCTAATTTTACGTCTATATCCTATGAAGAATAGATCTCTTCCTCAAATATTACTCCTTCATGCAAAACCTCCAAAAGAGGGATTGTTCTTCATGCAGGATCTTAAAAAAAATTATGTTTGAAGTTGCAAAAAGTTAAAATCCTTTCTGTTGTAGTATAGTGGTAAGTATTCTTGCCTGTCATGTGGGTGACTTGGGTTCATTCCTTTGCAATGGCGTTTGTTTTTTCTTTCCTGCTTTAAACTTGATTTATTAGACACAAAATAGAAAATAGATATTTATTTGTTGAATTGTGAATCACATATGTGTTACTATGGTTAAATACCATGGTTAGTTGTGAGTTGGGTTAGGTTAGTTTTGACCTATTTCTAGAGAGTGTGTATATTAGTATATAAAGCATCTTATGTGCCAAAGGGGTGGTGCGGTGGTCGAAAGCTTGAATTTTGAAAGTTTGCTCCCCTTAAGCTCCGTGACACACACTAGATGATTGTTCTCACAAGGCAGTCTGACAGACTTCTATAATCATTTTTTTTTTCTTCTATAATCTCCTCATGAGGATTCATTTATTTGTGTGGATTTTGACCATAGGAAAAATAAGAATTGGGATCTTTTGCAAATGTGAAGATTAAATCATTTTGGTTGTTTGTTTTGCAATTACAATGATGAAAGTGTAGATCATACTGTATAGTTCTTTTTTCAAAAGATGTGTGATGTAAATGCTGTTTGGCGTTCTGTGGTCCATCCATAAGAAGTGATGCATCTTATAATGGGTTATTTTTCATGCAAAAGGATCAAAGGAAGTTACTTTGGAAGTTTGTTATCCATAACAATTTCCCTATATACATGTAGGAAAATTGCCATGGATAGTATTTCTTAGGCCACATATAATTATAACATTTTTCTTAAAATATTTTGTTTATAGGAGGTTTTGATTTCATTTTAAAAAAAAATTCCCATTTTACCCCTTTCTTCCGCGAACTAATTGAATCTAGTATCAAACTAATTAAAGGCTCATCAAACTAAAACTGATTGAATCTATCGCTGAAAATTGATTGAAGTTTGGGCATTTTGGTCATTTTACCATGGCCACCCCATTATTTTGCTATTTATGAAATATTTTTAAAAAAAGTGCTATATTGATGGTATGTTCTTTGGTTTGTTTTGCCATACATGTAAAATCTCCATATATATATATAAAGAAACAAAAATATTTTCATTTATAAAAATAAAAGTGTCACATAGATTGTGAACCAAAGTTGAGTCTTTTTTACCTTGAGAAAATATGGTAAATACAAATATTGATCTCTCAAGAAGTTGAACATCCAACTTTAAGTCCTAAAAGGGAACACTTTTACATTCGAGAGATTATCTCATGAATCAGCTATACATCTGGAAGAAAAGTAATCATATGCTGAGGAAATTTCATTA

mRNA sequence

CTCCATAAAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAAAAAAAATACAGAGCTTCAGAATTAAATTAGGGTTAGAAAAGTCTCCTCTTCTCAGATAAATTTACAAACTCACCCATATCATAAGGTTGCTGGAATGTCCCACATCGAAAATTTTGATAGAAGAAGCACGCTACTTAAACGGAGAGATGAAGGAGGAAAAGGAAAGACCTTACTTGAACAGGATCTGTTCTATAGGTTGAATTAGTGTGTCCTTGAGTTTCAAGGGTTAGGGGTCGAAAGTCATAGTCTGATGGTTGAACCACTGCCTTGTGGCTAGAGCGTGAATAACGGCCCATGGGCTCTGCTCCTGAAGCTGTAGATGATCGTTATTGGCAGGGCTTGTCCTATCGGGATGGTTGCAAGGTGGTCTGATAGACTTCTATAATAGACTCCTCTTTTTGTGCCTTCTCTTTGATTGTTCTTTTTTTTCAAGCTTCTTTGTATCTTTGTTATACATTAGTGATTTATGGGGTTTGTTGCATTGGTGGGTATTTGTTTTGTGCACATAAGGTGTTTGATGATATGTCTCTCAATCTTTGTTTGCCCCTATTGATGTTTGTCTGTTTATTTTTGTTATGTTTTTCCTCTAAATATTTGATTGCAAGCAACAGTGTTGTTGCTCTCTTTTTCATTCTTCTAATTTGAAGAACTCAAGTGAGCTTTTTTATTTCCATGGTGCTACCTGCTACTGTTTTAAGCTTATCAACATTTCTATTCATTGTCTCCATGCTTTCGCCACACCAACTATACATTTTTCATTTTTTCTATGCATTGAGAGGGAGGCTGAATTATTAGGAGCTTTCGACCTCAAGGTTCCATTGAGAGGATTTGGAGCAGTTTTATTGAAGATCCAAGGCTCCAGAATGAAACAGTTGGGTGTTGCAGAAAGAAGTCTCGGAATCCGGTCCAACAAAACTCTGTCTATATGCTATTGCTTTGTGGAGTTACGAATTGCATCTCAGATCAACCGTCTTCTTCGGGCGGTAGTGAAATACTTCACAGATTCAAAAGCTGTTGAACCCCACCAGTTATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGACTTCGATTAGGCGTCTATATCTTATCTACTAGCGTGTTTTTTTTTATCCAAAGATTATACTTCTAGTCAATTTAAAAGTCTCTATTTAGAACCATTCTTTTATCGTTTCTAATTTTACGTCTATATCCTATGAAGAATAGATCTCTTCCTCAAATATTACTCCTTCATGCAAAACCTCCAAAAGAGGGATTGTTCTTCATGCAGGATCTTAAAAAAAATTATGTTTGAAGTTGCAAAAAGTTAAAATCCTTTCTGTTGTAGTATAGTGGTAAGTATTCTTGCCTGTCATGTGGGTGACTTGGGTTCATTCCTTTGCAATGGCGTTTGTTTTTTCTTTCCTGCTTTAAACTTGATTTATTAGACACAAAATAGAAAATAGATATTTATTTGTTGAATTGTGAATCACATATGTGTTACTATGGTTAAATACCATGGTTAGTTGTGAGTTGGGTTAGGTTAGTTTTGACCTATTTCTAGAGAGTGTGTATATTAGTATATAAAGCATCTTATGTGCCAAAGGGGTGGTGCGGTGGTCGAAAGCTTGAATTTTGAAAGTTTGCTCCCCTTAAGCTCCGTGACACACACTAGATGATTGTTCTCACAAGGCAGTCTGACAGACTTCTATAATCATTTTTTTTTTCTTCTATAATCTCCTCATGAGGATTCATTTATTTGTGTGGATTTTGACCATAGGAAAAATAAGAATTGGGATCTTTTGCAAATGTGAAGATTAAATCATTTTGGTTGTTTGTTTTGCAATTACAATGATGAAAGTGTAGATCATACTGTATAGTTCTTTTTTCAAAAGATGTGTGATGTAAATGCTGTTTGGCGTTCTGTGGTCCATCCATAAGAAGTGATGCATCTTATAATGGGTTATTTTTCATGCAAAAGGATCAAAGGAAGTTACTTTGGAAGTTTGTTATCCATAACAATTTCCCTATATACATGTAGGAAAATTGCCATGGATAGTATTTCTTAGGCCACATATAATTATAACATTTTTCTTAAAATATTTTGTTTATAGGAGGTTTTGATTTCATTTTAAAAAAAAATTCCCATTTTACCCCTTTCTTCCGCGAACTAATTGAATCTAGTATCAAACTAATTAAAGGCTCATCAAACTAAAACTGATTGAATCTATCGCTGAAAATTGATTGAAGTTTGGGCATTTTGGTCATTTTACCATGGCCACCCCATTATTTTGCTATTTATGAAATATTTTTAAAAAAAGTGCTATATTGATGGTATGTTCTTTGGTTTGTTTTGCCATACATGTAAAATCTCCATATATATATATAAAGAAACAAAAATATTTTCATTTATAAAAATAAAAGTGTCACATAGATTGTGAACCAAAGTTGAGTCTTTTTTACCTTGAGAAAATATGGTAAATACAAATATTGATCTCTCAAGAAGTTGAACATCCAACTTTAAGTCCTAAAAGGGAACACTTTTACATTCGAGAGATTATCTCATGAATCAGCTATACATCTGGAAGAAAAGTAATCATATGCTGAGGAAATTTCATTA

Coding sequence (CDS)

ATGGAGATACTGTTTCCATTTGTAGATTATGCTCTGCCTCTAGCATATGGTGTGTTGTTAGGGGTTTTGCTATTTCATTTGCAATCAATTCTTTCTGATCAAATTGGGGCCGAGGAGGAATTGATCTCTTTCGGCAATAGGTATGATCTGATCCCCTTAATCCCGGATGCAAATGGTACCTTTTCCACAAGATCTCTTATGAAAACTTTTGAAGCACAATCCATGAGCCTCACAAACTCTTTATACAACGACATATGGAAAGGTAAATTCCGAAAGAAGGTTTGGCATCTTTATACTTCTATAAGCTTATGGAAAAAACAATATCTCTATCAGATCACAATAGAATGGATACTTAGCAGGACTTCAAGGTGCTATGAGCATACCCTAAAGCTCTTTCACGCTTTAGGAGTCAATCTACATCCGGACGATTGA

Protein sequence

MEILFPFVDYALPLAYGVLLGVLLFHLQSILSDQIGAEEELISFGNRYDLIPLIPDANGTFSTRSLMKTFEAQSMSLTNSLYNDIWKGKFRKKVWHLYTSISLWKKQYLYQITIEWILSRTSRCYEHTLKLFHALGVNLHPDD
Homology
[Close]
BLAST of Sed0003000 vs. TAIR 10
Match: AT5G35220.1 (Peptidase M50 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.3e-04
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MEILFPFVDYALPLAYGVLLGVLLFH 27
           ME+L+PFVD ALPLAYGV LG+LLFH
Sbjct: 287 MELLYPFVDAALPLAYGV-LGILLFH 311

The following BLAST results are available for this feature:
BLAST of Sed0003000 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0003000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35220.16.3e-0480.77Peptidase M50 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003000.1Sed0003000.1mRNA
Sed0003000.2Sed0003000.2mRNA
Sed0003000.3Sed0003000.3mRNA