Sed0002417.1 (mRNA) Chayote v1

Overview


Name	Sed0002417.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 34766824 .. 34773000 (-)
Sequence length	345
RNA-Seq Expression	Sed0002417.1
Synteny	Sed0002417.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCTTGGTCAATTGGGCCACAATCACCGTCTCTCCGCCGGAATTCTGCCTTTCGCCACCACACACCGTTACCGACCTTTGCCGCCATCGAACCTCCTTCACCGCTGCATCGACCCTAGCGCAGATCCGCGACACTCCTCGTCGGAAACCGTAAGGCCCCGCGCAATTTTCTGAGCGTAAAGAGGTGACCCGCGAACCCGCTGCCTCGATCTGACCCGGTTCCCCTTCCTGACCCGCTACCCACTTGGATAGTCTTGGCAATGGGCTGTCCGAGCTTCTGATTTCATTTTAAAAGAGAAAGCTACCTAAATGTCTAAAATTAGAAATTATTTCAAGGAGTTTGTTTACACATTTTTAGACTTTAAATAAATGTTTATTCTTTAATTTAAAAAATAAATTTTAAATAACTAAAGGTAAAATGGACAGTTATACTCTTGAAATTTATATCAATTTCTTTTTTACGTATTATTCCAAACCTTGACTCTTTGTAACAACCATTCAAAAAAAATTTCACCAAATCTAAACAAAAATCTTCAACAGAATTTCACCAAATCTAAAAAAAATTGCTCATATTTAAATATGAAATATTTTTTAACAAAATTTTACCAAATCTAAACAAAAATCTAAAAATTGATTTAAACAAAAAATTTTAAAAAAAGATGAAATAAACCAATTTAAATTTGATTTTTTAACCAACATTAAAAATTTTTTACTGTATATAAACATACATAATACTACATACGAAACCTCCCACCGAAAATTTGTTGGTCGCAGCATGTATTTAAAAAGAGAAAATAAAAAACAAAGAAAGACGACTCATTTGATGCAACTGCATCCTTTGGCCGTGTGTAACTGTTCATACGACTACACATAATATTATATGCGTCAAACTTGGATCAGAGAATGCACATGGATTTATATACGACTGTCTGTACCCGTACTCAATCACATCAGCCGGTGTGTATTTATTTGTTTTTTTTTTTAATCTCATGTTCTTGGATATATACTCATGTGTACCAATACATACTGCCGTGATTTTAGCCGAAACACATCAGTCACTATATACACTTGCAAACCCATTGAACACCCACTGTACGTCTCTATCTCCTTGGTGATGTAGGTGTATGCTACTATGTAGGTTTATTTACATGTATTGTTCCCTCTTTTTTGCATCTCTTGTTCCTGGTTATATGTTCATGTGTACTAATGTATACTGTCATGATTTTAGCTAGAATGCACTATTTGCAACCCCATAAAATATCCATCCCACGCCTCTATCTTTTGTTACTAGTATGTTCTTTGCTTTGTTATTCCCGTATTTGTAATGAAAAAGACTAGATACTTGAACTTCCATCCAATTCGAGATATGCAGTGATGATGGAGATATTGTTGGATCCTTGAACGATGTCAAAACATATTGTGTTTTCATTGGAATATACATTCGCATCGTCTCAAATTTTGTTAAAAACAATTGTAATCGGCGTTGCTTCCATTAACAAAAAATCGAAGAAAAAAAAAACCTTGTGAATATCTTAGCTGAATGAAAGTGAGATCCAACAAATCACGATCAAAAGTGGGAGCATGAGTGAGATCAATTGAAGAATGTGGCAAGTATGAGATAGAGTGCTGCAAAATGAATAAAATGATAAAAAAAAAAAATCAATGGTCGAGATTGAGTGTTGAATGATATATTTATTATTTATTTGATTCAAAAATTGAAGGGAGTAGATATTTAGAGTATAAAGAGCAAAAGCAATTTAAAAAGTAATATATATATATATATATATATATATTGGTAGTTAGATATATCTCTTAAATTTGGGGAGACTTTCCAACGTATGTTTTTTTTTATTCCTTAATTAAGTTAAGGGGATGGTTCACAATAGGAGTTATTATTTTGTTATATCTTTTTAATATTAAAAAATGTAAAATAAGAGCATATGGGAATGTAAATATTCTCTCTCTTCACCTAATTTTGATTTAGACAAAAATTTAAAGTAAAAAAAATTAATAAACATTCTCTTGAGATAATTTCTAATTTTAGACGTTGATTACTGTTTCTCTTTTAAAACCAATTGAGGTGCTATGTTTATGTTTGGGAAATGGTAGAAAATGACTAAGTTTAGGGAAAAAATAGAGGTTATAACTTTTATGTATTGTTCTTTAAATGCATGGCTAAAAAAAATCAGGGAGGAGAGATAAATATTTTCATCTCCAAATTACCCTTATTTTTCCATTTAGGACTTTCACGTAAAAACAAAAAAGAAAAAACTAAAATATCCCTAAATCTAAGCCTAACCAATTTCTTCATAAATCCAAGCATATCCAATTTGATAATATTTCAAATTTAAAAACATTAAGATTTGGGGAGGGGATTAAAAAAAAAAAATTAAAAAATGGAAATCACGTTCGACTATACCATGAACACAAAAAATAATTGAAGATCACGATCAATCAAGAGTTGCTGGCAAACATTTCAGTCGTTCCACATAAATATTTATCTAGTAAAACTCAATCCTGATCCAGGTAAAAGTCTTGGTCATTCTGATTTGTAGTAAAAATTCAATCTTTCTTCCACCTTCGTTCAAGAACAATACAATCGGACTATGGATCTCATACTCGTAACTGTTGCGTTCAACGGTACTTGGGATGATAGGGACCATTGAATTGAGTCTTTAATTGAAGCTTCGAACTTATCACTTTATCACGATGGGGCTGATAAATCAAAAGGTATAGGTTCTAAAACTAGATCACGATGTACAGTGGTTATACAATGAGTTTGCGAGTGGGTTGTATAATGGATGTTTCATCATGTAGATCACGAGGTATAGTAGCTGTACGATTGAGCGTGGATGAAATCTATAGTTGGTATATTCGCTCGTCTGTCTACAAGGGAAGTAAATTATGAGTTATTAGAAAGTTGTGGATACACACACATGCCCTGTGGATGTAGTGGAGAATGACCATAGATAGATCACACCAATATTAGTGGTTGGGTATGCTGAATTCGCGATCTGGTCTTTTTTGCAGCCTGAAGTGGTTTCAAATCGGAGCTCGTGTGGGGGGTAGGGTTTTCGATGTGTTTGTTCAAAGGAAGAAAAATGGGAGATGAATTTTTCCTCTTCCAACAAAATGCACATTTAAGGCAATCTGAGGTACTTTTCTTTTCTTTTCTTTTTTCTTTCTTTTCTTACCAAAAAGCTCATACACCATTTCAAAAAATTTGAATTTACTAATATACAACATATGTGAAGGGGATGTAATTTCACCCTATATTTTCAAAAGTTGAATTGTCAACTTCAATTATTTGACTAAGGTTTGTTATAATTATTTATTCTATTTTAGATTTTTTTTTATATTCAAAAGTAGTTACACAATATCTTATTTAAAATAGATTGAAAAACAAATACTAGAAAATGTAGGAGGGGTACAATAGTCAATCAATCACTCTATTAAAAATAAAAAAGTATCCAGATTTTAAAAAAGAACATAAATTTAAAGTCTAACGATTAATAACTAGAGTTTTCGTTATTTTCCAATATTTAGCCATTTCCTTAGTTGTCCTTGGGTTAACTAGGTAAATGTCTAAAGGGACAACTAGGCAAATATCTACTTTTTCAAAATATATTTAGCTAATGTCTACCCTTTTAAATAGTTAAAATAAATGTCTAAAACATAAAATCTGGTAGAAATAAAATAAATACTTATAATGCAAATGATGGTTTTGACCTTTTACATTATTTAGTTTTATTTTAATATCGTCAATATATGATTTTAGATTTTTTCAACAAACTCTCCTGGATTTGATAAAAATAAAAGAAAAAGATATTAAAGATATATATTTTTTATTTAGTTTGATAAAATAAACAATATTTAGATTTGATTAAAAATAATTTTAACAAAAAAAATCATCTAATGCATCATTCCTCTCCTGCTGTCATCAAACTCTCTAAAGCGTCTTTGCGTTCCAGACCTAAACCCTAACAACGTAGAAGTATCATTGTTGGAGCGATTTCGTCATAGATGAAATTTCATTATCCTTTTTTATCATACGTATGTATACACTCCTATAAACAATCAAATAGTGTTTCGATGTTGTGTATAATAGTATATACGGAAGTGGATAAAACACAAAATCTTGGTTTCGAAATCAGCAAAAAGAAATATGGCATCCATAAATAGACATATGATTCTGGAGAAACGAAAAATACAAGCTAAAGAAAAATTATCACAATACCTAGATAACCAAACATTGTGTTGTACGATCAGAAAAAATTCCATAAACTCTAAATTGGATTTTTGTAAGTTCTTTTCTTTTGGCTTGATCTACCACACCTACTGCACGTCACCTTGGCTAGCGCTTCGTTGTAAAATCAGATTCTCTTCTTGCGAAGTCTTCTTACTAATCTTCTTACATTGGGTTGTTGGACTACTGGTATCAATAACTCATGGTTTTGTCTAGGGTATCTACGTGATGAAACTTGCTAGTATTGACAAGCCATGCAATCTGTTACAAAATACATCATCATTACTAGTATATCCCTGGACTCCATCTCGATGCAACCCCATAAATTTGTACATACCTTTAACATCGGATTAGTGTATTCATGAGTTGGATTAAATTGCTCTAATATATAAAATTTGAGGAGATGATGACTAACCCCAAATTTAAGTTTGTCCAAATTTTTTTTTATAACTCAGTTCAATCCAGACCATGAACACCATAGTGTCCATAATGAATTTGAACCATTCATCTTCCATTATTATTGAAGTAAAAGAAGACAAACTTAGATTATTGTACACAAAGGGTGTGCATTTTTTGGTAGAATAAAAGTGGAGATGGTTAGGATTGAACCAACCTCTTGTTTGCTTTTATTTTGAAAGGAAATCAACTTTATTAAACATAAAGACCAGTATAACCATTTCTCCATATGATACCACATATTGATCCATCTCCACAGATCAGAGTGTGACCACACAAACAAAAAAAGCTAAAGACAAAACCAAGTCTATTATGAAAGCAAGTCAATCGTGCCAATGTCTTGAAAGAGTTGGAGTAACGAGACTCCAACTGAAATGATTAATAAACTATCGTATCTCTTTTTTATTTATTTATTTATTTATTTTATAGATTTCAAAAGGTAATCTAACGTTCATCTCAATAATAGAAATGGAGAACCCATCAAAGTAAAAATGAGAAGTGTAGCAACCATAAAAAAACTAGCTTTCCCCATCCACAAAGCAACCAATCTTCCTATTACATGCTTAACCTTTATCAACTAGTTCAACTCAAGAACTTAGCACCAAAATCTCCCAAATACGTAAAATATTAAAGTAGTAAAAATATTTAGCAAATAAACACTGAATCAAAAGATATTGCTTTAAAGGGAATGTGGCTTAGTTGAAAGAAAACATTGAGGCCCAATAAGATCCATGTCCGACCAAGCCGACGGCCCATAAATCCAACCGCCAAAATCCCAGCTGTTAGAAACACTATACATGGGAGACAAAATCTCTTCCAAAGTAAATTTGAGGCTATTTGTTTGGTATATTTAGGTACGATTTAGTTTTAGGATTTATTAATTTTCCCCCGAAAATCTATATCTAGATGAGTTTCTATTAGTTTCTTCTTATTTTTACTTTTAAAAACTAACTTTCATTTCCAACCATTTGTTTTTAATCATTTATTTATAATTGAATTATTTTTAACCACTCATTTTTAATCATTTATTTCAAATCAATCAAAATAACTCATCTTTAACCGCTTATTTTTAATCATTTCTTTTTTAACTACTTATTTTAAATCTAAAACAAGATTTTGTCTCTAACTTATCTACATAAAAACTACATTTAAACGAATTTTTTACTACAATTTTTAATTTTTAACTACTCAAAATTAACTTGTGAACTTAATTTCTAACAAAGGCACAAGAAATTCTGAACTATGTAGAATAATGAGTGGACCTTCTTGGTTTGTGTCAGAGAACAAATTGGGCTTCGACCAAAACCCAACGGACAAAAGGTTCAATCCTTCTTCTCCGGTGATGCAGCCATTGGCACTGTAAAATCTGGCGACAAACCTTGTCTTAGGCCACGAACCTCCATCGACGTTCCCTCCCTGTCCATAGAGGATTCTTCTCTCACTAGAACAAACCTCATTGTTTTGACTTAA

mRNA sequence

ATGAAATTCTTGGTCAATTGGGCCACAATCACCGTCTCTCCGCCGGAATTCTGCCTTTCGCCACCACACACCGTTACCGACCTTTGCCGCCATCGAACCTCCTTCACCGCTGCATCGACCCTAGCGCAGATCCGCGACACTCCTCGTCGGAAACCAGAACAAATTGGGCTTCGACCAAAACCCAACGGACAAAAGGTTCAATCCTTCTTCTCCGGTGATGCAGCCATTGGCACTGTAAAATCTGGCGACAAACCTTGTCTTAGGCCACGAACCTCCATCGACGTTCCCTCCCTGTCCATAGAGGATTCTTCTCTCACTAGAACAAACCTCATTGTTTTGACTTAA

Coding sequence (CDS)

ATGAAATTCTTGGTCAATTGGGCCACAATCACCGTCTCTCCGCCGGAATTCTGCCTTTCGCCACCACACACCGTTACCGACCTTTGCCGCCATCGAACCTCCTTCACCGCTGCATCGACCCTAGCGCAGATCCGCGACACTCCTCGTCGGAAACCAGAACAAATTGGGCTTCGACCAAAACCCAACGGACAAAAGGTTCAATCCTTCTTCTCCGGTGATGCAGCCATTGGCACTGTAAAATCTGGCGACAAACCTTGTCTTAGGCCACGAACCTCCATCGACGTTCCCTCCCTGTCCATAGAGGATTCTTCTCTCACTAGAACAAACCTCATTGTTTTGACTTAA

Protein sequence

MKFLVNWATITVSPPEFCLSPPHTVTDLCRHRTSFTAASTLAQIRDTPRRKPEQIGLRPKPNGQKVQSFFSGDAAIGTVKSGDKPCLRPRTSIDVPSLSIEDSSLTRTNLIVLT

Homology

The following BLAST results are available for this feature:

BLAST of Sed0002417.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0002417.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0002417.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0002417.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0002417	Sed0002417	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002417.1-cds	Sed0002417.1-cds-LG07:34766824..34767013	CDS
Sed0002417.1-cds	Sed0002417.1-cds-LG07:34772846..34773000	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002417.1-exon	Sed0002417.1-exon-LG07:34766824..34767013	exon
Sed0002417.1-exon	Sed0002417.1-exon-LG07:34772846..34773000	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0002417.1	Sed0002417.1-protein	polypeptide