Pay0020731.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0020731.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pre-mRNA-splicing factor CWC25-like protein
Location	chr01: 4851020 .. 4858108 (+)
Sequence length	453
RNA-Seq Expression	Pay0020731.1
Synteny	Pay0020731.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAAATGACACAGACTCTGCATTTGGCTTCTGCAAGTAACACCAAAACAATGTTGTATCCCAAAAGTTTACCTTAAAACTCCAATTGAATTCCCTTCCAAAGCTAAGATTTATTTTTCCTAAATCATCATCTTTGGATTGACAATGAACAAACAAGTTTTGGTCTTTGCTTAGGCCATTGACAATATGGATGTGCCATCTCTTCAGCCCGAGACCCTCGGTTGGCTTAAGTATAGCCAATGACAACGCTAACAAGAAGCAAAATATCAAAAAGTGCTTTTCCATAGATCTCATAGTCTCCATTTACTTGAGATATTGCACTTAATTTGAAAAGCACTTTGGTTTCGGGTTATAAAAAGGGATGTAAAGTGCAATGGATATATCCAAATTCTTTGAATGATGCGGCGATATAAATGCTGTCCGTTTGAGTAAAATTTTGGTGAGTTATAAATTAATAAGTTACTTAATTAAGGCTCTAATTATTATTTAATTTCTTGTATTTAGTCATGAGTCTTTAGTCTTGAAACGATTGATTTATTACTGCATTTAATTCGGGATGTAACATCACAAAACAAGCTATTTAAAAAGATTGAGACTTATTTTTGGTAATGAAATAATATACGATGAAAACATGGTAAATAATGGTAAGGTATTATAAATAAGTAATATAATAGTATAGATGTCCATGTCATATGTCTTATTATTGTAGACACCTAGGGTACGTTTTGGGAAGGGTTGAGTTAGAGAAGGGTTAATGTTCTGATAAAACTAGTGTAATGATAAATCTAGTTTTATCATAACCCTTGTTTGGGGAAAAGATTTAGAAATATAGTTTTATGTAAGAGGCGTTTGGGGAGAAAGGGTTCACGTGGGAAGGCCGGGATTTATGGGGGGGGGGAATTTTTTTTATGATAAGATGTGTTGGGAGAAGGGTTTAGGTGGGTAGTTTTATGAGAATTTTATAATAAGATGTGTTTTGGAGAATGGTTATGTGGGGTAGGTTTACCTGAAATTAATGATAAAATTTATTTGGGGGAAGTGTTATGTGGGTTGGGTTATGAATAATTTTTTTTATGTGTAATTTTTTTTAAATGACATTGTAAATATAAGTAAGAAATTATTATTACATATTTTTTTACGAAAACGTTGAACCCGTCTTATTGAAAATAATTTTTTCTATGTGTAACGTTATTAAGTAGTAAAGATAGTTGGTCGCATTTGAAAATAATTTTTAACAAAATTTACTAAATTTATTCTAGAGTCAATTTTTTAAAATACAATTATTTATTGCCTATTTGTAATTAGTGATAAATAATTAGCGATAGCGGTAGCGGCGTACATTTGTTTTTAGCATATATAATTATATGGTGTAACGCATGTGTCCATATTTATAATTATTCATTAAATTAGTTATTATGTAGTAGTTGAATGCCATATTGCTCAAATTGTTACTATTTTCGTTAATTTTAAAAAACATTTTCAATAGAATTGAAGGGATGTAGAAGGGAGAAAAAGATAACATATGCATAAGATGTCAAGTACATACGAAAAAAGGTTGTGTACAATATGAAAAAGAAATAACAGTCAATAACATAGTGGAAGTCAAGGAAAAAGAAAAGCTAGCCAACGAAGTACAAACATAAACTATCTGGAGATGTCTCATAGGATGACTCTACAAAAGCCCTCCCTCTCATCCTCAGGCATCGATGAGAAATCCCGCATTTTGTCTATACGAGACAAAAGGTTCCTTGCAATAACGCCCTATCCAAACTTGTTAGTTTCGACATCTCACGCAATATGCGAAAGAATTCCTACCGCACTTGGTTGTCATTGGCAAGGGCGTGTTCAGGCCAATCCGCAATCATCCTAAGTTGGTCAGTTTGTACACTCCAGCGCCATATATATGACTTCAAGCTCTGCCTTTCACTGGCTTCCCCTTTTCCTCTTCGATTCGCTCGATCCCACTCTACCCTCAGACGCACGAGAAGGTCGTGATGTGCGTACATCCTCCTAGGACATGTCAATCCCCTAGCTGTACATTGATGGGAAGTCCTCGTTCACATCAAGCATGTCGAACCTCTCATACGCGACAGGCTCCTTAGACTCCACGTCTACGAACGTCTTTGCGAAGCGACCCGCCGCTCTATCACGGCCGAACGCATATGCAAGTTCGTCGTAATAGATAAATGGTTTGTTAAGGAGTCCATTCACTGGCAAGTAGCAGAACGTTTAATTTATGTTTCTTACCTTAACCCAGTTATTGAAGAGTTCCTTCTCCGTAATTATGCATTTTGCGTCGTCGTTCCAACCGAATCCATTGCAGGTTGGCCCCCGCATTTCTGCGATGGCCTGGAAAATCCACTTCAGTGTCTTTATTCTGTAGTCAGTTACAATGGTTGCACGGACCTGACATCCTGGTAATTTCTCCGACATTATGTGTACCAGTTGTGTCAAGTAACCTGGCCGAAACGTACCATTGTCGGATTTCCATCCCCCCATGGAAACGAAATCCACTAAACACTCTACAAGAGTGTCCTCCTCCTCCTTAATCTATACATGCCTCGGGCACGCAATGAGGTAGCCATTCTGAGAATGAAAAACGATAAATAATTCATGGAAGCCATTAGTAATTTTACATTTCCACATTTACAATACAAACGAAGAGGAAACAATACATGACCTATACTATATGTAACAAATGCACGGTTACATTACATTTAAAATAAGAACAAAGTAACAAAGTAATTTACATTGCCACACAACCGACCCTAATTTTAAAAGCGTTTTAGTTAACATTACGCAACTGCCATTTCTTTGAACGTTGCTTTAGCTAATTCGTCGCACCAATTTGACCACTCGATTGTCGTCTCAATGTACTGAATGTCTTCTGTAGCGGTGGTGGTGGCTTATGTGGAGTCCCCCTCGTCGAGTTCGTCTATGTCGTCGCAATTGATCATTTCTTTGTTTATCAAATTATGGAGCAATTAACATGCTAGGATTGTTCGGCACTGCACTTAGAGCGGATAATAGGACTTCCCACGAAGTATTGCCCAACGATCCTTAAGAACACCGAATGCGCGCTCAATCACATTTATTGCAGATAAGTGCTTCATGTTGAAGTATTCCTTTGTAGTTGTTGGGGCATTTCCATCACCCCACCAATCTTGCAAGTGGTAGCGCTAACCTCTGTATGGAGCGAGGAATCCCTTAGCATTTGGATAACCCACATCACATACGTAATAATATCCTGTACCGAAAACTGATACTCTATTGGCATTCCATTTGTAACTTCCAAAATGGTAATGAAAATTAAAATTGTAGATACCCTTTGGCATTTGCAATCCGTTTTCTCTGCCAAGGGCATCCTAGAGAATTCGTGATTCTACTACATATCCTTCATAACCGGCAAGGACATATACAAAATCCTCTTTCGTGTCGCAGACGTCGAGCACATTTGTCGCAATTTCCCCCTTTCGCGTTCTGAACGAAGGTTGTTTTGCTGCGGGCACGTTCACCTTTATGTACGTCCCATCCAATGCCCCAAAGCAATTTTGCAGGTTCATAGAAAGAGGCTTACATTACCGTGACATTCTGATACTTGACAAACTTACCATATAAATAGTGGCGCACCTCGAAACACTTCTAACGTTGATCAGTGTAGTTGTTTGATACTGACACAGGTTTCTTTATCAACTCGTCGTGGAGTCGCACCATAACCAAAAGGACGAGGTTAAAATGTCGTGAGATTGTCTCGCTTGATTGTACAAATTTCCGTTGAATTACACGGTTCTTAACGTCATGTGCAAGGACGTGCAAGAACATCGCAACCATTTTCTCGACATCAACAATCTCCGTCGATGAAAGACCAGCTACAGTCCTAAGTAAGTGGCATAGAATTGCAAATATGCGCCTATTTATGTAGGTGCTTTCGCGACACACAAGATCAGACTCGTGTATCATCCGAAAGTACGCAAACTGCCTAATTCTATTCCTTGTAGCAAACGGTGTTTGTAGGAGATGCTTATTGACGTTCATTAGTAGCTCCAACGTTAGGAGCATCTGACGTTGGGCAAATGTGAACTCGGTTAGGACTCCAAGAAGTGTTTGTTGATCCATGTCAAATGACCTTAACTGCATTACAAAATATGTGCCTAAGTATGTTATTAGAATGGTCATTTACAATCACTAGAAGAAATCCAACTTTTAATGTCGGGTGGAAAAAATAAAAACGGAGCTTTAATGTCGGTTTTCAAAAGATGGATGTTTAATGTCGGTTTTAAGTCGACATTAAAGAGGGAGCTTTATGTCGGTTTAAAATTCGACCTTAAAAAACAAAAATTCTTTCCCCTTTTTTTTTTTTTGAAAAGCGACATTAAAGCTTATTTCAATTTTTAAATTTTTAAAAATTTTTTAATTTCGAAAAAAGTTAATGGTTTCTCTCTTAATTTACTCTTTACTCTCCGAGCCACACGATTTTACAATCCCTCACTTTCTGAATTTCTTTTATTCTCTTCTCAATCTCATCTCACTTTAATCCCTCTCTTCTCTGAACGGCAAGCGCCGCCACCATCTTTAGAAGAAATCTCTCGTGCCCGGTCGTTATCGAACCCACCATCGTCGTCCCTCGTGTCCTGCCCGTACCTTGTCATTGTCGAACAGTCCTTCTTCGACTGTCGTTGTGCTCGCCACCACCGTCGATTCAAACATCTCTACATTTCTATTTAAGGTAGTTTTACTATCATATAGAAAAAATGAATGATATAACATCTCTTGCATTTCTCAAAACCCACGATTTCACCTATTGCCTCAAATTTCCACAGCCCACAATTTCATCTCAAACTCAAATTTCCTTATTTTCTCTATGTTTCGTTAGAAGTACAAAAGAAAAGAAGAAGTCGAAGGGATAAAATTTTGTCGTTGCCGCAAAAATTTTCGAGGCAATGTTCTAACGTAAATCCCAATTCTCCCTCAAATTTCTTGATTTCTTATTCTCCATCTTCTTCTTTCTTTTGTTATCCGTGTTTCAATTTTTTAGGTTTCAGGAGAAGATATGGGAGAACCCATTTGCATGACTTTGGTCGTTGCCGCCGGTAACAAAATACTTCAGAAGAAGGGAACCGTCATTTTCTTTTTCACATTTTTTAGGTCATTTAATTTCATCCGATTCGTTTTTTTATTCTTCCTTGAGTTGTTTGATCGCTAGTAGTATAGTGTTTCTTTAATTCTCAATTTTTTGGATTTCATTAAGGAAGCATGAGAGATTGAATTTTCTTTATGAATTGGGTTTGAAAGTTGGGAAAGCTAGCAATTTCGATGGATTTAAAAGCCTTGAAACCCTACTTAGTTCAACTATTGCCGCGACTGCCACTGAACCATCTAGTTCCAAGGTATTATTGCGTTTTTTCGCTAATTTGTGTGCTTTGGTTATCTCTCTTTGTATTGTTCAATTATGATGTTTGTTGGATATTAGAGCTCTGTTTGAGGATGAGCCTCACTCTGCCAATGATGCATGGAGGAAACTCCATTCTGATCCTTTGCTCATCATTTAACAGCGTGAGAATAAACTCTTGCTCGCGTAAAAAACAATCCTATGGCTATGATTTGCAAAACCGTTACTAGTTTTTAATCTCCTTTTATGGCTTTAACACCACTAAACCTTAAAATTTAAATTCTTATAACACGGGCTGATGAAATTCGTTTTATGTGGAACTCTTTCCTTCCTTTCATTATTTGTCAGAAGAGGATTTTTGAACTTTTTCTTAGTTGTCATGGACACTGTTACTTGGGTGGCCTCTAATTACTTAATTATTCTTTTGAGCTGATGTGATGAATTTCTCTGCATTTCTCTTACTCTTTTGATAGAAGCTAAAGATGAATCTTTGATCAGAAAGTTTTTTCTATATTATTGCTGAGACAATCTTGGCATAGAGTAAATGCTTATCAGCATTATTTAATCTGTCATTGATTTTTGTTGTAGAGATTAAAGTTATCCCTATCCAAAGTAGATTAGAAGACAAGAAAGTAATGGTCATTTAGTAAATATTTTAGTCTGAAGTGGACAAGCTAAAGTAGAGAATACAGTTATATTGAAGGAAGGTAGAGTTCAATAATGTATTGAACAAAAACTGAGAAATGATAGATTTCTAGGATTTCTCAAGTTCATAATGGATTTCTAGGATTTTCTCCAACAATTTTCAATAAATAAACAATCAAATCTTCGAAAATTTTCAATAAATAAACATTTTCTAACACTAACTTTACTGAAAACAAGGAGCCTGACCAATCCCTTTACATTTTTTCTATTACCATTTCTTCTCAATTTAAGCATTATAAAACGCATTCTAGGTGTTTGGTTAAACGTTGCAAGCACTGGTGGAGTTTTTTAGGTTTTGGTTTTGTTTCTTATGTGCTTATTGGTTGAGACTTTTTGTGTTTTGGTTTGATTTTGATCTTTTATTCATATGGTAATAATGATTCTTATAGTATGAAAAAGATTTGGGGTATTTTGATCTTTAATAGTGTTGAATATAAGTTGTGTTTATTGATAGTGAAATTATATGTAGGTGTTTGGATGATGTTATATTTGTTGTAGTTCATATGGAAGTGTTGAAAATTGTATGCTGGTATTTTAAGTGTTGATCTTGTGTGCATTGCAGGTGAAATAGAAATATAAGGTTTGCCACGGAGTGTAACATTTACGAAATTGTGCTTTCTTTGGTTTTTGCTTCGTCTTTGTGCAATCTACTTGGCAGCTTGAAAGGTGGAAATGACCATATAGATAGATGGTCAGACGATCGTTGAAGGTTGAAGACTGAAAAGACGTTTGGTCGTGGGTATCTTGCATTTTTCGTGCTTGATCTCTGTATATCATATACTATGATCACAAATACTCTGTACCATGTTAACTTGTTTAAAGTTGGTTGTAATAGTCACATTGTATGCGTGGTCAAAGTCCCTATCAATTGTCATTTCCTAGCTTACTAGTTTATCCGTTTCAGATTGTTAATAGAATCAAGAAGTTAAGGAAGAAAGCTGCCCTTGAACCTACAGATACAGTAGAAGTGTATTTTCGATCACAAGATTAG

mRNA sequence

ATGCCTCAAATGACACAGACTCTGCATTTGGCTTCTGCAAAAGTACAAAAGAAAAGAAGAAGTCGAAGGGATAAAATTTTGTCGTTGCCGCAAAAATTTTCGAGGCAATGTTCTAACGTTTCAGGAGAAGATATGGGAGAACCCATTTGCATGACTTTGGTCGTTGCCGCCGGTAACAAAATACTTCAGAAGAAGGGAACCGTCATTTTCTTTTTCACATTTTTTAGGAAGCATGAGAGATTGAATTTTCTTTATGAATTGGGTTTGAAAGTTGGGAAAGCTAGCAATTTCGATGGATTTAAAAGCCTTGAAACCCTACTTAGTTCAACTATTGCCGCGACTGCCACTGAACCATCTAGTTCCAAGATTGTTAATAGAATCAAGAAGTTAAGGAAGAAAGCTGCCCTTGAACCTACAGATACAGTAGAAGTGTATTTTCGATCACAAGATTAG

Coding sequence (CDS)

ATGCCTCAAATGACACAGACTCTGCATTTGGCTTCTGCAAAAGTACAAAAGAAAAGAAGAAGTCGAAGGGATAAAATTTTGTCGTTGCCGCAAAAATTTTCGAGGCAATGTTCTAACGTTTCAGGAGAAGATATGGGAGAACCCATTTGCATGACTTTGGTCGTTGCCGCCGGTAACAAAATACTTCAGAAGAAGGGAACCGTCATTTTCTTTTTCACATTTTTTAGGAAGCATGAGAGATTGAATTTTCTTTATGAATTGGGTTTGAAAGTTGGGAAAGCTAGCAATTTCGATGGATTTAAAAGCCTTGAAACCCTACTTAGTTCAACTATTGCCGCGACTGCCACTGAACCATCTAGTTCCAAGATTGTTAATAGAATCAAGAAGTTAAGGAAGAAAGCTGCCCTTGAACCTACAGATACAGTAGAAGTGTATTTTCGATCACAAGATTAG

Protein sequence

MPQMTQTLHLASAKVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKIVNRIKKLRKKAALEPTDTVEVYFRSQD

Homology

[Close]

BLAST of Pay0020731.1 vs. ExPASy Swiss-Prot
Match: F4JLM5 (Isoleucine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g10320 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 122  KIVNRIKKLRKKAALEPTDTVEVYFRSQD 151
            +IVNRI+KLRKK+ LEPTD VEVYF+S D
Sbjct: 1015 EIVNRIQKLRKKSGLEPTDFVEVYFQSLD 1043

[Close]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL
Match: A0A1S4E3L4 (uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.3e-51
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 12  SAKVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 71
           S +VQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF
Sbjct: 39  SLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 98

Query: 72  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI 124
           FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Sbjct: 99  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL
Match: A0A1S3CFU5 (uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.3e-51
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 12  SAKVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 71
           S +VQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF
Sbjct: 39  SLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 98

Query: 72  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI 124
           FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Sbjct: 99  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL
Match: A0A5A7T0H4 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00290 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVATGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIAATATEPSSSK
Sbjct: 61  TLPSSTIAATATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL
Match: A0A5D3DE30 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00040 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIA TATEPSSSK
Sbjct: 61  TLPSSTIATTATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL
Match: A0A5D3CF18 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001190 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHETLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIAATATEPSSSK
Sbjct: 61  TLPSSTIAATATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. NCBI nr
Match: XP_016902821.1 (PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-51
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 12  SAKVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 71
           S +VQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF
Sbjct: 39  SLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 98

Query: 72  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI 124
           FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Sbjct: 99  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of Pay0020731.1 vs. NCBI nr
Match: XP_008462005.1 (PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-51
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 12  SAKVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 71
           S +VQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF
Sbjct: 39  SLEVQKKRRSRRDKILSLPQKFSRQCSNVSGEDMGEPICMTLVVAAGNKILQKKGTVIFF 98

Query: 72  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKI 124
           FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSK+
Sbjct: 99  FTFFRKHERLNFLYELGLKVGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of Pay0020731.1 vs. NCBI nr
Match: KAA0034965.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVATGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIAATATEPSSSK
Sbjct: 61  TLPSSTIAATATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. NCBI nr
Match: TYK21842.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIA TATEPSSSK
Sbjct: 61  TLPSSTIATTATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. NCBI nr
Match: KAA0037864.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-30
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 45  MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNFLYELGLKVGKASNFDGFKSLE 104
           MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LN LYELGL+VGKASN DGFKSLE
Sbjct: 1   MGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHETLNLLYELGLEVGKASNSDGFKSLE 60

Query: 105 TLLSSTIAATATEPSSSK 123
           TL SSTIAATATEPSSSK
Sbjct: 61  TLPSSTIAATATEPSSSK 78

[Close]

BLAST of Pay0020731.1 vs. TAIR 10
Match: AT4G10320.1 (tRNA synthetase class I (I, L, M and V) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-05
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 122  KIVNRIKKLRKKAALEPTDTVEVYFRSQD 151
            +IVNRI+KLRKK+ LEPTD VEVYF+S D
Sbjct: 1015 EIVNRIQKLRKKSGLEPTDFVEVYFQSLD 1043

The following BLAST results are available for this feature:

BLAST of Pay0020731.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLM5	3.8e-04	75.86	Isoleucine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g1032...	[more]

BLAST of Pay0020731.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E3L4	3.3e-51	97.32	uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CFU5	3.3e-51	97.32	uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7T0H4	2.4e-30	93.59	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DE30	2.4e-30	93.59	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CF18	4.1e-30	93.59	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Pay0020731.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902821.1	6.7e-51	97.32	PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo]	[more]
XP_008462005.1	6.7e-51	97.32	PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo]	[more]
KAA0034965.1	5.0e-30	93.59	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320...	[more]
TYK21842.1	5.0e-30	93.59	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]	[more]
KAA0037864.1	8.5e-30	93.59	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818...	[more]

BLAST of Pay0020731.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10320.1	2.7e-05	75.86	tRNA synthetase class I (I, L, M and V) family protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0020731	Pay0020731	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0020731.1-cds	Pay0020731.1-cds-chr01:4851020..4851059	CDS
Pay0020731.1-cds	Pay0020731.1-cds-chr01:4855897..4855973	CDS
Pay0020731.1-cds	Pay0020731.1-cds-chr01:4856059..4856168	CDS
Pay0020731.1-cds	Pay0020731.1-cds-chr01:4856272..4856410	CDS
Pay0020731.1-cds	Pay0020731.1-cds-chr01:4858022..4858108	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0020731.1-exon	Pay0020731.1-exon-chr01:4851020..4851059	exon
Pay0020731.1-exon	Pay0020731.1-exon-chr01:4855897..4855973	exon
Pay0020731.1-exon	Pay0020731.1-exon-chr01:4856059..4856168	exon
Pay0020731.1-exon	Pay0020731.1-exon-chr01:4856272..4856410	exon
Pay0020731.1-exon	Pay0020731.1-exon-chr01:4858022..4858108	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0020731.1	Pay0020731.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005684	U2-type spliceosomal complex