PI0012459.1 (mRNA) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCCGATTCACTCTCTCTTCAAGGTCTCTCTCTCCTTCTTCCTACTATTCACATTCACACAATTTCTTCACTTCTTTTATCGATCTATTCCCGCTTCACCATTTTCAGCTAATTTCCCCAATTTTTAACCTCTAATTTCGTATCTCATATGGGTTCATCAGGTTCACGTTTCTTGTTATACTTCGGTTTATGTGATCCATTTTAGTTTGAAAGAAACGATCTTGGATCAATTCTGCTCCCTTCAGAACTTCTCATTACATCTTGTATTACTTTTCAATGCTTAACTTTTCTTTTTTTGCACAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGTTTGTTCTTGATCAGTTTGTTCTATAGTTATGCTTATGTTTCTTTTTGCTCTTAAAGTTCTTTCCGTTTGGTGTGACCAATTTTCTTGCCCTAGAAAGTCTGTAGGAGAAAGAGGGGTTACTAGATAGATCTTTGTATAACAATGGTGCATGGATAGGGGAATAACGAATCACATAGTCTAAGGCAGTTAGAAAGGGCTCTCTCTCAAACCATTAGGATTTTGCAATGATAATGAAATTTCCTATTCTAAGAGCTATGAAAGAAACAAAATGCAATGGGCCGAAGATGATAGGCCCTTTCATTATATAGTCTTCTACTTCTTTATAGCCTACAAAGTATGTTAAGGCCGCTCCCTTCACTTGGGGCAGCGCACTCACCCCTCACTAGTTCTTTGTTGGGCTCTGCCTCGGGATTATTGCACCTGCTTTAACCGTTTTGTTGTCCCCTTCTTTGGTAAGACATTGTTATATCTTTCAAGAATCTTGTGAAAAAACTCCCAAGTTTTTGAACTTTTTAAATTAAATCATTTTGCATAATTCTGTTTGATTTTTAATTGAGAATTTTTGTTCTGGACATTTGCAAACTTAGATTATCTTAACCTCATGCTTAAGTCTTAGAGATTTGTTGCAATGATACTCGGCATGCTCGACACTGTAAAAATGCTGTATGACCCTACTATGTAGTGGTATTCCATCACATTAGTCTGCCTTTTATTTTTGTAATATCAATTCAGTGGATTTTCATTCAGTTTTCTTCTCCATTACGGTGCATCAGTGTTTCAGTTTTGACCTGCATTCTTGCATGATCTTGCATGATCTTGTTCTCAGTTGCAAGTTGCTTTAAGTTTCTGTATAGCTTGTGATTTGTAATAGATCTCTATATCACTGATTGTGTTCTGGTACTAATTTTTTAAACTGCCTACTGTTTTCTTTAAACACATGTACTGGCTACTGCACACTGCTATTCTTCCTAGTTTACTGATGTTTAATAATCAATTTTGAGTTAGAATATGATAAATCCTGGTCTTCTACCAATTTGAATTTATTTTTTGTCACAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTATGTAGGACTTGCGGATTCTTTGGTACTGATGTTCTTTTTAATTAGCAAAAAGACAATTTTATACTTTGTGGTCATATGGTTTTTGATTAATTCTGTAAAATTTATACCACATTTTATTTTTAGTATCTGATAAATATTTAATATAATAAATTTTCTTTGCTGCTTTCTCAAATTGGTTTAGAGTTAATGGTATTAGAGAAAGCACATTTTCATTAATTTTCTTGCTTCTTTTGAACAAAATGTTTTTGGCACAAACCTTGGTAGAAGTCATTGCTGAAGTTTCTGAAGTAGATCCGTAGTGTTCCATCTTTCTAATTATGCATCTGATTATAGGGTCATTTCTTTCTGTTTCTTCTATTCTTTTTTTGTTTTTCCTTATCATGTATTAGGTCTGTTTTTTGAATGTTGAAGATTTAACAGTGAAAGTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGGTTTGAATACATAGAAGATGTTCTCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATAACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTATGGCAGGCCAAATACCTGACCTGATTCTGTGGCTTTACTAAAACTTTTATTTTACAACATTTTCCCTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGGTATGAAGCTGCTTTGTATCATATATGAGATACTTTATAGACATGGATGCTTGTAATTAAGTGTCAAATAATCTGGTGCATTTGCATATGTTCTCCAACACTTCTCACGGTAAAAAAACTACTCTTTAATGCTTGGAAAAGCACTTTTTATATATATTTATATTAAATATACTTTTTGGGATATCTTATAATATTTAGAAAGTGCTTTTATTAGGCTAAAAGCACTATCCAATAGTTGGTTTACAGTTCACCAGTGTTTTCCAAGCACAAGGCGCAATCTAAGGCAACAAACCTTTTAATCGCCTCAAGGCGAGAGGTGACAAAAAGATGTCGCCTGATTGAAGCGAGGCGCAGTTAATAAAATAGTAAATAGTAATAATATAAATAAAAAATACATAAGATTAGAAAGAAATTAACTCAAATAATCTTGAGGGGAAAAATATTTGAAAAAAGATATAGAAATAAAAATGATTTTGTTTCTACTTTGACTCTTTTTCTTCTTCAATTCTCCTTCATTTCTTTGATTTTCCTTTAATTCTACCTTCACAAACTTTGATTGTTCATTTTAGGCCTATCGAATAAGAATGTTTTTTTTCCTAAAAAAAGTTGAGCAATTGAACAAGGCGAGCGCAAAAGGCAAGTGGTCACCTTGGGTACTTGCAAGGCATTAAGTCCTTGCCTCGCCTCACCTCTCGCCTCAGGCAATGCCTGGCCGCACCTTAACAACACTGAAGTTCAGTATTGTATCTGTTAAACAAAATTAATATTTCAGTTGTACAAACAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGGTATTTTTTAAAATCTATTGCTATTTGATATCTAGTTCTTATTATGTATAATCTGAACCCTTTTTTGAGCCTCAATTTTTTCTGTATCTCAATGCAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAGGCAAACAGTTTAAAACTTGGGAAGAACTACAATGTACTATTGCCATTGTTTAGTTTGATGTTTCCGTTATAGACATCATTTCCTTAGTATTGTTGGCTAGCGTTTGTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTACTTTTATGCTGTCTTTCGTGGTGTGATGACACTTTACTATATATTTTTCGAGCTTGTTTTTTATATAGTTTTCTTTTGCATGCATGTTA CGCCGATTCACTCTCTCTTCAAGGTCTCTCTCTCCTTCTTCCTACTATTCACATTCACACAATTTCTTCACTTCTTTTATCGATCTATTCCCGCTTCACCATTTTCAGCTAATTTCCCCAATTTTTAACCTCTAATTTCGTATCTCATATGGGTTCATCAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAGGCAAACAGTTTAAAACTTGGGAAGAACTACAATGTACTATTGCCATTGTTTAGTTTGATGTTTCCGTTATAGACATCATTTCCTTAGTATTGTTGGCTAGCGTTTGTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTACTTTTATGCTGTCTTTCGTGGTGTGATGACACTTTACTATATATTTTTCGAGCTTGTTTTTTATATAGTTTTCTTTTGCATGCATGTTA ATGGGTTCATCAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAG MGSSAPARFLDTGPLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ Homology
BLAST of PI0012459.1 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 5.6e-87 Identity = 197/297 (66.33%), Postives = 215/297 (72.39%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 1.6e-78 Identity = 184/292 (63.01%), Postives = 208/292 (71.23%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.0e-31 Identity = 109/248 (43.95%), Postives = 137/248 (55.24%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.4e-29 Identity = 112/285 (39.30%), Postives = 147/285 (51.58%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.9e-26 Identity = 98/249 (39.36%), Postives = 141/249 (56.63%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy TrEMBL
Match: A0A0A0LZX6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV=1) HSP 1 Score: 538.1 bits (1385), Expect = 2.4e-149 Identity = 290/308 (94.16%), Postives = 296/308 (96.10%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy TrEMBL
Match: A0A1S3BPL2 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 1.9e-138 Identity = 273/290 (94.14%), Postives = 274/290 (94.48%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy TrEMBL
Match: A0A1S3BNX5 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1) HSP 1 Score: 496.1 bits (1276), Expect = 1.0e-136 Identity = 273/294 (92.86%), Postives = 274/294 (93.20%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 1.3e-126 Identity = 256/292 (87.67%), Postives = 261/292 (89.38%), Query Frame = 0
BLAST of PI0012459.1 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1) HSP 1 Score: 456.8 bits (1174), Expect = 7.0e-125 Identity = 256/296 (86.49%), Postives = 261/296 (88.18%), Query Frame = 0
BLAST of PI0012459.1 vs. NCBI nr
Match: XP_004139072.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativus] >KGN66890.2 hypothetical protein Csa_006988 [Cucumis sativus]) HSP 1 Score: 510.8 bits (1314), Expect = 8.5e-141 Identity = 276/290 (95.17%), Postives = 279/290 (96.21%), Query Frame = 0
BLAST of PI0012459.1 vs. NCBI nr
Match: XP_008450303.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cucumis melo]) HSP 1 Score: 501.9 bits (1291), Expect = 3.9e-138 Identity = 273/290 (94.14%), Postives = 274/290 (94.48%), Query Frame = 0
BLAST of PI0012459.1 vs. NCBI nr
Match: XP_008450302.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo]) HSP 1 Score: 496.1 bits (1276), Expect = 2.2e-136 Identity = 273/294 (92.86%), Postives = 274/294 (93.20%), Query Frame = 0
BLAST of PI0012459.1 vs. NCBI nr
Match: XP_038879568.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Benincasa hispida]) HSP 1 Score: 492.3 bits (1266), Expect = 3.1e-135 Identity = 270/290 (93.10%), Postives = 273/290 (94.14%), Query Frame = 0
BLAST of PI0012459.1 vs. NCBI nr
Match: XP_038879567.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hispida]) HSP 1 Score: 486.5 bits (1251), Expect = 1.7e-133 Identity = 270/294 (91.84%), Postives = 273/294 (92.86%), Query Frame = 0
BLAST of PI0012459.1 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 ) HSP 1 Score: 322.4 bits (825), Expect = 4.0e-88 Identity = 197/297 (66.33%), Postives = 215/297 (72.39%), Query Frame = 0
BLAST of PI0012459.1 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 ) HSP 1 Score: 308.9 bits (790), Expect = 4.6e-84 Identity = 197/310 (63.55%), Postives = 215/310 (69.35%), Query Frame = 0
BLAST of PI0012459.1 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 ) HSP 1 Score: 308.1 bits (788), Expect = 7.8e-84 Identity = 170/241 (70.54%), Postives = 187/241 (77.59%), Query Frame = 0
BLAST of PI0012459.1 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A ) HSP 1 Score: 294.3 bits (752), Expect = 1.2e-79 Identity = 184/292 (63.01%), Postives = 208/292 (71.23%), Query Frame = 0
BLAST of PI0012459.1 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 ) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-32 Identity = 109/248 (43.95%), Postives = 137/248 (55.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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