PI0012459 (gene) Melon (PI 482460) v1

Overview
NamePI0012459
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL30A
Locationchr02: 6990003 .. 6994284 (-)
RNA-Seq ExpressionPI0012459
SyntenyPI0012459
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGATTCACTCTCTCTTCAAGGTCTCTCTCTCCTTCTTCCTACTATTCACATTCACACAATTTCTTCACTTCTTTTATCGATCTATTCCCGCTTCACCATTTTCAGCTAATTTCCCCAATTTTTAACCTCTAATTTCGTATCTCATATGGGTTCATCAGGTTCACGTTTCTTGTTATACTTCGGTTTATGTGATCCATTTTAGTTTGAAAGAAACGATCTTGGATCAATTCTGCTCCCTTCAGAACTTCTCATTACATCTTGTATTACTTTTCAATGCTTAACTTTTCTTTTTTTGCACAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGTTTGTTCTTGATCAGTTTGTTCTATAGTTATGCTTATGTTTCTTTTTGCTCTTAAAGTTCTTTCCGTTTGGTGTGACCAATTTTCTTGCCCTAGAAAGTCTGTAGGAGAAAGAGGGGTTACTAGATAGATCTTTGTATAACAATGGTGCATGGATAGGGGAATAACGAATCACATAGTCTAAGGCAGTTAGAAAGGGCTCTCTCTCAAACCATTAGGATTTTGCAATGATAATGAAATTTCCTATTCTAAGAGCTATGAAAGAAACAAAATGCAATGGGCCGAAGATGATAGGCCCTTTCATTATATAGTCTTCTACTTCTTTATAGCCTACAAAGTATGTTAAGGCCGCTCCCTTCACTTGGGGCAGCGCACTCACCCCTCACTAGTTCTTTGTTGGGCTCTGCCTCGGGATTATTGCACCTGCTTTAACCGTTTTGTTGTCCCCTTCTTTGGTAAGACATTGTTATATCTTTCAAGAATCTTGTGAAAAAACTCCCAAGTTTTTGAACTTTTTAAATTAAATCATTTTGCATAATTCTGTTTGATTTTTAATTGAGAATTTTTGTTCTGGACATTTGCAAACTTAGATTATCTTAACCTCATGCTTAAGTCTTAGAGATTTGTTGCAATGATACTCGGCATGCTCGACACTGTAAAAATGCTGTATGACCCTACTATGTAGTGGTATTCCATCACATTAGTCTGCCTTTTATTTTTGTAATATCAATTCAGTGGATTTTCATTCAGTTTTCTTCTCCATTACGGTGCATCAGTGTTTCAGTTTTGACCTGCATTCTTGCATGATCTTGCATGATCTTGTTCTCAGTTGCAAGTTGCTTTAAGTTTCTGTATAGCTTGTGATTTGTAATAGATCTCTATATCACTGATTGTGTTCTGGTACTAATTTTTTAAACTGCCTACTGTTTTCTTTAAACACATGTACTGGCTACTGCACACTGCTATTCTTCCTAGTTTACTGATGTTTAATAATCAATTTTGAGTTAGAATATGATAAATCCTGGTCTTCTACCAATTTGAATTTATTTTTTGTCACAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTATGTAGGACTTGCGGATTCTTTGGTACTGATGTTCTTTTTAATTAGCAAAAAGACAATTTTATACTTTGTGGTCATATGGTTTTTGATTAATTCTGTAAAATTTATACCACATTTTATTTTTAGTATCTGATAAATATTTAATATAATAAATTTTCTTTGCTGCTTTCTCAAATTGGTTTAGAGTTAATGGTATTAGAGAAAGCACATTTTCATTAATTTTCTTGCTTCTTTTGAACAAAATGTTTTTGGCACAAACCTTGGTAGAAGTCATTGCTGAAGTTTCTGAAGTAGATCCGTAGTGTTCCATCTTTCTAATTATGCATCTGATTATAGGGTCATTTCTTTCTGTTTCTTCTATTCTTTTTTTGTTTTTCCTTATCATGTATTAGGTCTGTTTTTTGAATGTTGAAGATTTAACAGTGAAAGTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGGTTTGAATACATAGAAGATGTTCTCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATAACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTATGGCAGGCCAAATACCTGACCTGATTCTGTGGCTTTACTAAAACTTTTATTTTACAACATTTTCCCTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGGTATGAAGCTGCTTTGTATCATATATGAGATACTTTATAGACATGGATGCTTGTAATTAAGTGTCAAATAATCTGGTGCATTTGCATATGTTCTCCAACACTTCTCACGGTAAAAAAACTACTCTTTAATGCTTGGAAAAGCACTTTTTATATATATTTATATTAAATATACTTTTTGGGATATCTTATAATATTTAGAAAGTGCTTTTATTAGGCTAAAAGCACTATCCAATAGTTGGTTTACAGTTCACCAGTGTTTTCCAAGCACAAGGCGCAATCTAAGGCAACAAACCTTTTAATCGCCTCAAGGCGAGAGGTGACAAAAAGATGTCGCCTGATTGAAGCGAGGCGCAGTTAATAAAATAGTAAATAGTAATAATATAAATAAAAAATACATAAGATTAGAAAGAAATTAACTCAAATAATCTTGAGGGGAAAAATATTTGAAAAAAGATATAGAAATAAAAATGATTTTGTTTCTACTTTGACTCTTTTTCTTCTTCAATTCTCCTTCATTTCTTTGATTTTCCTTTAATTCTACCTTCACAAACTTTGATTGTTCATTTTAGGCCTATCGAATAAGAATGTTTTTTTTCCTAAAAAAAGTTGAGCAATTGAACAAGGCGAGCGCAAAAGGCAAGTGGTCACCTTGGGTACTTGCAAGGCATTAAGTCCTTGCCTCGCCTCACCTCTCGCCTCAGGCAATGCCTGGCCGCACCTTAACAACACTGAAGTTCAGTATTGTATCTGTTAAACAAAATTAATATTTCAGTTGTACAAACAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGGTATTTTTTAAAATCTATTGCTATTTGATATCTAGTTCTTATTATGTATAATCTGAACCCTTTTTTGAGCCTCAATTTTTTCTGTATCTCAATGCAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAGGCAAACAGTTTAAAACTTGGGAAGAACTACAATGTACTATTGCCATTGTTTAGTTTGATGTTTCCGTTATAGACATCATTTCCTTAGTATTGTTGGCTAGCGTTTGTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTACTTTTATGCTGTCTTTCGTGGTGTGATGACACTTTACTATATATTTTTCGAGCTTGTTTTTTATATAGTTTTCTTTTGCATGCATGTTA

mRNA sequence

CGCCGATTCACTCTCTCTTCAAGGTCTCTCTCTCCTTCTTCCTACTATTCACATTCACACAATTTCTTCACTTCTTTTATCGATCTATTCCCGCTTCACCATTTTCAGCTAATTTCCCCAATTTTTAACCTCTAATTTCGTATCTCATATGGGTTCATCAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAGGCAAACAGTTTAAAACTTGGGAAGAACTACAATGTACTATTGCCATTGTTTAGTTTGATGTTTCCGTTATAGACATCATTTCCTTAGTATTGTTGGCTAGCGTTTGTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTACTTTTATGCTGTCTTTCGTGGTGTGATGACACTTTACTATATATTTTTCGAGCTTGTTTTTTATATAGTTTTCTTTTGCATGCATGTTA

Coding sequence (CDS)

ATGGGTTCATCAGCTCCAGCGAGATTCTTAGACACCGGGCCTTTGTCTTTAGTTGCTGTACAAATGAGGGGCAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGGGGGCGCTATGTGGGACGTGGAAGAGACCTTCCCACTAGCCTTCTAGTTCGCAATCTCAGCCATGACTGCAGGCCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCGAAGGATTATTATACTGGAGAACCACGCGGTTTTGGTTTTGTTCAATATGTAGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGACGGCTGTGTTCTTCTCGGTCGGGAATTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGACGATTTCATGATCGAAGAAGATCTCCTCCGCGGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGGCATGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCGCCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGTCAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGTAGGTCATACTCCCGATCTCCATGTCTAGATGGTTCAAGGAGTAGGAGTCAGAGTCCACCACGACCTGGAAGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGAAGTCGTAGTCCCCACCGTAGTCCTCGGCGTAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGTGATAGGAGCCCAAGTCAATAG

Protein sequence

MGSSAPARFLDTGPLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ
Homology
[Close]
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 5.6e-87
Identity = 197/297 (66.33%), Postives = 215/297 (72.39%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNL HDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASP 201
           +MRARERG GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS DY SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 202 PKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPV 261
           P +R + RS+SPR+          R + R RSYSRSP  DGSR RS +P R  SRS SP 
Sbjct: 181 PPRRHHPRSISPREE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPS 240

Query: 262 RGRSLSRS--RSRSKSVSRSRSRSPHRSPRRSPRH-------EEEYRSEPNGDRSPS 310
             RS+SRS  RSRS S  R+RS SP RS  RSPR           Y  EP   RS S
Sbjct: 241 PRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQS 273

[Close]
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.6e-78
Identity = 184/292 (63.01%), Postives = 208/292 (71.23%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLSHDCRPEDLRRPFGQF 81
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNL HDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 82  GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKP 141
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKH MDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 142 SDMRARERG--SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDY 201
           ++MR R+RG  S RF DRRRSPPRYSRSP                P  R  RSRSRS  Y
Sbjct: 121 TEMRTRDRGGRSNRFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSRGY 180

Query: 202 ASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSP 261
            SPP +R  SRSVSP+DR   +E          RSYSRSP  +GSR RS SP R  S S 
Sbjct: 181 NSPPAKRHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHSR 240

Query: 262 SPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SP   RS+S  ++RS +  ++RS+SP   PR+S       R   NGDRSPSQ
Sbjct: 241 SP--RRSVSPRKNRSYTPEQARSQSP--VPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.0e-31
Identity = 109/248 (43.95%), Postives = 137/248 (55.24%), Query Frame = 0 

Query: 17  LVAVQMRGRSYTP-----SPPR---GYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDC 76
           +   + R RSY+P     SPPR   GY        P  R        P+ LL+RNL  D 
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSR--DHESSGPSGLLIRNLPLDA 60

Query: 77  RPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGREL 136
           RP DLR  F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A   M+  V+ GRE+
Sbjct: 61  RPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREI 120

Query: 137 TVVFAEENRKKPSDMRARERGSGRFHDRR----RSPPRYSRSPRYSRSPAQRHGRYSRSP 196
            +VFAEENRK P +MR     SGR  D +    RSP R  RS   SRSP +R  R+    
Sbjct: 121 AIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH---- 180

Query: 197 APRHARSRSRSYDYASPPKQ-RAYSRSVSPRDRPVSRERS--FPRQESRGRSYSRSPCLD 250
                 S+ R  D  SP ++ R+ SRS  PR+    + R+   PR+E R  +  RS CL 
Sbjct: 181 ------SKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREE-RVLTPIRSRCLS 235

[Close]
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-29
Identity = 112/285 (39.30%), Postives = 147/285 (51.58%), Query Frame = 0 

Query: 25  RSYTP---SPP-RGYGRRGRSPSP---------RGRYVGRGRDLPTSLLVRNLSHDCRPE 84
           R Y+P   SPP RGYG RGRSP P          G   GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 85  DLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVV 144
           +LR PF +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 145 FAEENRKKPSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARS 204
            A E+RK+P +MR + R               +RS   S S  + HGR SRS +   +RS
Sbjct: 122 VASESRKRPEEMRVKTR---------------TRSREPSGSRDRSHGR-SRSRSISRSRS 181

Query: 205 RSRSYDYASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSR---SPCLDGSRSRSQ 264
             R  D  S  + R+YS        P  R R  P +     +YSR   SP  +G+ + + 
Sbjct: 182 PRRPSDSRSRYRSRSYS--------PAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAP 241

Query: 265 SPPRPGSRSPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPR 294
              R G        G      R   ++VSRS S S  RS   SPR
Sbjct: 242 DRDRNGDNEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR 262

[Close]
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-26
Identity = 98/249 (39.36%), Postives = 141/249 (56.63%), Query Frame = 0 

Query: 57  TSLLVRNLSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH 116
           TSL VRN++ D R EDLRR FG++G I D+Y+P D+YT  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 117 HMDGCVLLGRELTVVFAEENRKKPSDMRARE-----------------RGSGRFHDRRRS 176
           ++D   + GR++ + FA+ +RK P+ M+A+E                 R   R ++RRRS
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 177 PPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASPPKQRAYSRSVS-PRDRPV 236
             R S    Y RS + R+ R    P  R  RSRS S +     + R++SRS S  R R  
Sbjct: 130 RSR-SFDYNYRRSYSPRNSR----PTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSK 189

Query: 237 SRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPVRGRSLSRSRSRSKSVSR 288
           S+ +   + +SR RS S +     S++ S++  + GSR     R +   RS+S+S+S SR
Sbjct: 190 SQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSR 249

[Close]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match: A0A0A0LZX6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.4e-149
Identity = 290/308 (94.16%), Postives = 296/308 (96.10%), Query Frame = 0 

Query: 4   SAPARFLDTGPLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRN 63
           ++PARFLD+GPLSLVAV MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRN
Sbjct: 101 TSPARFLDSGPLSLVAVLMRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRN 160

Query: 64  LSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVL 123
           LSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVL
Sbjct: 161 LSHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVL 220

Query: 124 LGRELTVVFAEENRKKPSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRS 183
           LGRELTVVFAEENRKKPSDMRARERGSGR+HDRRRSPP   RSPRYSRSPAQR GRYSRS
Sbjct: 221 LGRELTVVFAEENRKKPSDMRARERGSGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRS 280

Query: 184 PAPRHARSRSRSYDYAS-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDG 243
           PAPRHARSRSRSYDYAS PPKQRAYSRS+SPRDRP SRERSFPRQESRGRSYSRSP LDG
Sbjct: 281 PAPRHARSRSRSYDYASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDG 340

Query: 244 SRSRSQSPPRPGSRSPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEP 303
           SRSRSQSP +PGSRSPSPVRGRSLSRSRSRSKSV RSRSRS  RSPRRSPRHEEEYRSEP
Sbjct: 341 SRSRSQSPTQPGSRSPSPVRGRSLSRSRSRSKSVGRSRSRS--RSPRRSPRHEEEYRSEP 400

Query: 304 NGDRSPSQ 311
           NGDRSPSQ
Sbjct: 401 NGDRSPSQ 403

[Close]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match: A0A1S3BPL2 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.9e-138
Identity = 273/290 (94.14%), Postives = 274/290 (94.48%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYAS- 201
           DMRARERGSGRFHDRRRSP RYSRSPRYSRSPAQR GRYSRSPAPRHARSRSRSYDYAS 
Sbjct: 121 DMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASP 180

Query: 202 PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSP 261
           PPKQRAYSRSVSPRDRP SRERSFPRQESRGRSYSRSP LDGSRSRS SP R   RSPSP
Sbjct: 181 PPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GRSPSP 240

Query: 262 VRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           VRGRSLSRSRSRSKSVSRSRS    RSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 VRGRSLSRSRSRSKSVSRSRS----RSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match: A0A1S3BNX5 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 1.0e-136
Identity = 273/294 (92.86%), Postives = 274/294 (93.20%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERG----SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYD 201
           DMRARERG    SGRFHDRRRSP RYSRSPRYSRSPAQR GRYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 202 YAS-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSR 261
           YAS PPKQRAYSRSVSPRDRP SRERSFPRQESRGRSYSRSP LDGSRSRS SP R   R
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GR 240

Query: 262 SPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SPSPVRGRSLSRSRSRSKSVSRSRS    RSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVSRSRS----RSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.3e-126
Identity = 256/292 (87.67%), Postives = 261/292 (89.38%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRG--RDLPTSLLVRNLSHDCRPEDLRRPFGQ 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRG  RDLPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 82  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 141
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 142 PSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYA 201
           PSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPA RH RYSRSPAPRHARSRSRSYDY 
Sbjct: 121 PSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDYT 180

Query: 202 S-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSP 261
           S PPKQRA SRSVSPRDR  SRERS+PRQ SRGRSYS+SP L+GSRSRSQSP R GSRS 
Sbjct: 181 SPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGGSRSQ 240

Query: 262 SPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SP RG      RSRS+SVSRS      RSPRRSPRHEEEYRS+PNGDRSPSQ
Sbjct: 241 SPARG------RSRSRSVSRS------RSPRRSPRHEEEYRSDPNGDRSPSQ 280

[Close]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 7.0e-125
Identity = 256/296 (86.49%), Postives = 261/296 (88.18%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRG--RDLPTSLLVRNLSHDCRPEDLRRPFGQ 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRG  RDLPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 82  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 141
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 142 PSDMRARERG----SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRS 201
           PSDMRARERG    SGRFHDRRRSPPRYSRSPRYSRSPA RH RYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 202 YDYAS-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPG 261
           YDY S PPKQRA SRSVSPRDR  SRERS+PRQ SRGRSYS+SP L+GSRSRSQSP R G
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240

Query: 262 SRSPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SRS SP RG      RSRS+SVSRS      RSPRRSPRHEEEYRS+PNGDRSPSQ
Sbjct: 241 SRSQSPARG------RSRSRSVSRS------RSPRRSPRHEEEYRSDPNGDRSPSQ 284

[Close]
BLAST of PI0012459 vs. NCBI nr
Match: XP_004139072.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativus] >KGN66890.2 hypothetical protein Csa_006988 [Cucumis sativus])

HSP 1 Score: 510.8 bits (1314), Expect = 8.5e-141
Identity = 276/290 (95.17%), Postives = 279/290 (96.21%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYAS- 201
           DMRARERGSGR+HDRRRSPP   RSPRYSRSPAQR GRYSRSPAPRHARSRSRSYDYAS 
Sbjct: 121 DMRARERGSGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASQ 180

Query: 202 PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSP 261
           PPKQRAYSRS+SPRDRP SRERSFPRQESRGRSYSRSP LDGSRSRSQSP +PGSRSPSP
Sbjct: 181 PPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSRSPSP 240

Query: 262 VRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           VRGRSLSRSRSRSKSV RSRSRS  RSPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 241 VRGRSLSRSRSRSKSVGRSRSRS--RSPRRSPRHEEEYRSEPNGDRSPSQ 285

[Close]
BLAST of PI0012459 vs. NCBI nr
Match: XP_008450303.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cucumis melo])

HSP 1 Score: 501.9 bits (1291), Expect = 3.9e-138
Identity = 273/290 (94.14%), Postives = 274/290 (94.48%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYAS- 201
           DMRARERGSGRFHDRRRSP RYSRSPRYSRSPAQR GRYSRSPAPRHARSRSRSYDYAS 
Sbjct: 121 DMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASP 180

Query: 202 PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSP 261
           PPKQRAYSRSVSPRDRP SRERSFPRQESRGRSYSRSP LDGSRSRS SP R   RSPSP
Sbjct: 181 PPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GRSPSP 240

Query: 262 VRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           VRGRSLSRSRSRSKSVSRSRS    RSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 VRGRSLSRSRSRSKSVSRSRS----RSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]
BLAST of PI0012459 vs. NCBI nr
Match: XP_008450302.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo])

HSP 1 Score: 496.1 bits (1276), Expect = 2.2e-136
Identity = 273/294 (92.86%), Postives = 274/294 (93.20%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERG----SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYD 201
           DMRARERG    SGRFHDRRRSP RYSRSPRYSRSPAQR GRYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 202 YAS-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSR 261
           YAS PPKQRAYSRSVSPRDRP SRERSFPRQESRGRSYSRSP LDGSRSRS SP R   R
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GR 240

Query: 262 SPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SPSPVRGRSLSRSRSRSKSVSRSRS    RSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVSRSRS----RSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]
BLAST of PI0012459 vs. NCBI nr
Match: XP_038879568.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Benincasa hispida])

HSP 1 Score: 492.3 bits (1266), Expect = 3.1e-135
Identity = 270/290 (93.10%), Postives = 273/290 (94.14%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYAS- 201
           DMRARERGSGR HDRRRSPPRYSRSPRYSRSPAQRH RYSRSP PRHAR+RSRSYDYAS 
Sbjct: 121 DMRARERGSGRLHDRRRSPPRYSRSPRYSRSPAQRHARYSRSPPPRHARTRSRSYDYASP 180

Query: 202 PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSP 261
           PPKQ+AYSRSVSPRDRP SRERSFPRQ+SRGR  SRSP LDGSRSRSQSP R GSRSPSP
Sbjct: 181 PPKQKAYSRSVSPRDRPDSRERSFPRQQSRGRP-SRSPRLDGSRSRSQSPARAGSRSPSP 240

Query: 262 VRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           VRGRSLSRSRSRSKSVSRSRS    RSPR SPRH EEYRSEPNGDRSPSQ
Sbjct: 241 VRGRSLSRSRSRSKSVSRSRS----RSPRLSPRH-EEYRSEPNGDRSPSQ 284

[Close]
BLAST of PI0012459 vs. NCBI nr
Match: XP_038879567.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hispida])

HSP 1 Score: 486.5 bits (1251), Expect = 1.7e-133
Identity = 270/294 (91.84%), Postives = 273/294 (92.86%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120

Query: 142 DMRARERG----SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYD 201
           DMRARERG    SGR HDRRRSPPRYSRSPRYSRSPAQRH RYSRSP PRHAR+RSRSYD
Sbjct: 121 DMRARERGSHTNSGRLHDRRRSPPRYSRSPRYSRSPAQRHARYSRSPPPRHARTRSRSYD 180

Query: 202 YAS-PPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSR 261
           YAS PPKQ+AYSRSVSPRDRP SRERSFPRQ+SRGR  SRSP LDGSRSRSQSP R GSR
Sbjct: 181 YASPPPKQKAYSRSVSPRDRPDSRERSFPRQQSRGRP-SRSPRLDGSRSRSQSPARAGSR 240

Query: 262 SPSPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SPSPVRGRSLSRSRSRSKSVSRSRS    RSPR SPRH EEYRSEPNGDRSPSQ
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVSRSRS----RSPRLSPRH-EEYRSEPNGDRSPSQ 288

[Close]
BLAST of PI0012459 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 322.4 bits (825), Expect = 4.0e-88
Identity = 197/297 (66.33%), Postives = 215/297 (72.39%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNL HDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASP 201
           +MRARERG GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS DY SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 202 PKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPV 261
           P +R + RS+SPR+          R + R RSYSRSP  DGSR RS +P R  SRS SP 
Sbjct: 181 PPRRHHPRSISPREE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPS 240

Query: 262 RGRSLSRS--RSRSKSVSRSRSRSPHRSPRRSPRH-------EEEYRSEPNGDRSPS 310
             RS+SRS  RSRS S  R+RS SP RS  RSPR           Y  EP   RS S
Sbjct: 241 PRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQS 273

[Close]
BLAST of PI0012459 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 308.9 bits (790), Expect = 4.6e-84
Identity = 197/310 (63.55%), Postives = 215/310 (69.35%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNL HDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 82  AIKDIYLPKDYYTG------------EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELT 141
            +KDIYLP+DYYTG            +PRGFGFVQ++DPADAADAKHHMDG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 142 VVFAEENRKKPSDMRARERGSG-RFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRH 201
           VVFAEENRKKP++MRARERG G RF DRRR+PPRY     YSR         SRSP PR 
Sbjct: 121 VVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRY-----YSR---------SRSPPPRR 180

Query: 202 ARSRSRSYDYASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQ 261
            RSRSRS DY SPP +R + RS+SPR+          R + R RSYSRSP  DGSR RS 
Sbjct: 181 GRSRSRSGDYYSPPPRRHHPRSISPREE---------RYDGR-RSYSRSPASDGSRGRSL 240

Query: 262 SPPRPGSRSPSPVRGRSLSRS--RSRSKSVSRSRSRSPHRSPRRSPRH-------EEEYR 310
           +P R  SRS SP   RS+SRS  RSRS S  R+RS SP RS  RSPR           Y 
Sbjct: 241 TPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYT 286

[Close]
BLAST of PI0012459 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 308.1 bits (788), Expect = 7.8e-84
Identity = 170/241 (70.54%), Postives = 187/241 (77.59%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 81
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNL HDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 82  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 141
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 142 DMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDYASP 201
           +MRARERG GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS DY SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 202 PKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSPSPV 261
           P +R + RS+SPR+          R + R RSYSRSP  DGSR RS +P R  SRS SP 
Sbjct: 181 PPRRHHPRSISPREE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPT 217

Query: 262 R 263
           +
Sbjct: 241 Q 217

[Close]
BLAST of PI0012459 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-79
Identity = 184/292 (63.01%), Postives = 208/292 (71.23%), Query Frame = 0 

Query: 22  MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLSHDCRPEDLRRPFGQF 81
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNL HDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 82  GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKP 141
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKH MDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 142 SDMRARERG--SGRFHDRRRSPPRYSRSPRYSRSPAQRHGRYSRSPAPRHARSRSRSYDY 201
           ++MR R+RG  S RF DRRRSPPRYSRSP                P  R  RSRSRS  Y
Sbjct: 121 TEMRTRDRGGRSNRFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSRGY 180

Query: 202 ASPPKQRAYSRSVSPRDRPVSRERSFPRQESRGRSYSRSPCLDGSRSRSQSPPRPGSRSP 261
            SPP +R  SRSVSP+DR   +E          RSYSRSP  +GSR RS SP R  S S 
Sbjct: 181 NSPPAKRHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHSR 240

Query: 262 SPVRGRSLSRSRSRSKSVSRSRSRSPHRSPRRSPRHEEEYRSEPNGDRSPSQ 311
           SP   RS+S  ++RS +  ++RS+SP   PR+S       R   NGDRSPSQ
Sbjct: 241 SP--RRSVSPRKNRSYTPEQARSQSP--VPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]
BLAST of PI0012459 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-32
Identity = 109/248 (43.95%), Postives = 137/248 (55.24%), Query Frame = 0 

Query: 17  LVAVQMRGRSYTP-----SPPR---GYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDC 76
           +   + R RSY+P     SPPR   GY        P  R        P+ LL+RNL  D 
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSR--DHESSGPSGLLIRNLPLDA 60

Query: 77  RPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGREL 136
           RP DLR  F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A   M+  V+ GRE+
Sbjct: 61  RPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREI 120

Query: 137 TVVFAEENRKKPSDMRARERGSGRFHDRR----RSPPRYSRSPRYSRSPAQRHGRYSRSP 196
            +VFAEENRK P +MR     SGR  D +    RSP R  RS   SRSP +R  R+    
Sbjct: 121 AIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH---- 180

Query: 197 APRHARSRSRSYDYASPPKQ-RAYSRSVSPRDRPVSRERS--FPRQESRGRSYSRSPCLD 250
                 S+ R  D  SP ++ R+ SRS  PR+    + R+   PR+E R  +  RS CL 
Sbjct: 181 ------SKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREE-RVLTPIRSRCLS 235

The following BLAST results are available for this feature:
BLAST of PI0012459 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SEU45.6e-8766.33Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=... [more]
Q9LHP21.6e-7863.01Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX... [more]
Q1PDV22.0e-3143.95Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=... [more]
Q8L3X82.4e-2939.30Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=... [more]
O754941.9e-2639.36Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S... [more]
BLAST of PI0012459 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZX62.4e-14994.16RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV... [more]
A0A1S3BPL21.9e-13894.14serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo... [more]
A0A1S3BNX51.0e-13692.86serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo... [more]
A0A6J1DIJ41.3e-12687.67serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch... [more]
A0A6J1DH067.0e-12586.49serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica ch... [more]
BLAST of PI0012459 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139072.18.5e-14195.17serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativu... [more]
XP_008450303.13.9e-13894.14PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cuc... [more]
XP_008450302.12.2e-13692.86PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cuc... [more]
XP_038879568.13.1e-13593.10serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Benincasa hisp... [more]
XP_038879567.11.7e-13391.84serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hisp... [more]
BLAST of PI0012459 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55310.14.0e-8866.33SC35-like splicing factor 33 [more]
AT1G55310.34.6e-8463.55SC35-like splicing factor 33 [more]
AT1G55310.27.8e-8470.54SC35-like splicing factor 33 [more]
AT3G13570.11.2e-7963.01SC35-like splicing factor 30A [more]
AT5G18810.11.4e-3243.95SC35-like splicing factor 28 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 58..131
e-value: 4.1E-21
score: 86.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 59..128
e-value: 1.3E-18
score: 66.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 57..135
score: 17.114126
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 52..195
e-value: 1.4E-26
score: 95.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..303
NoneNo IPR availablePANTHERPTHR23147:SF155SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30Acoord: 22..178
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 22..178
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 57..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012459.1PI0012459.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding