Moc01g18250.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g18250.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr1: 12564799 .. 12565979 (+)
Sequence length765
RNA-Seq ExpressionMoc01g18250.1
SyntenyMoc01g18250.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGGTCCGGAAGGAGGAATTATGTTACCTTTTGGATGCATTATAGAAAAGGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGGCCTAGAAGGAGGAATTATGTTACCTTTTGAATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGACCTAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACAAGTCTGAGAACCTTTGACTTGGCCCAAAGGATGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGTCTCGGCTCAGAAGGAGGAATTATGTTACCTTTTGGATGTATTACAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

mRNA sequence

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Coding sequence (CDS)

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Protein sequence

MEKVVSPRTFDLVQKEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEELGYLLDALQKMAIIHSLEEEVTSLRTFDSKRVIISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSLEEEKRAIISSLEEEVTSLRTFDSTQKEKLCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEEELTSLRTFDSAQKEDLC
Homology
[Close]
BLAST of Moc01g18250.1 vs. NCBI nr
Match: OMH86130.1 (hypothetical protein AX774_g317 [Zancudomyces culisetae])

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-04
Identity = 72/274 (26.28%), Postives = 113/274 (41.24%), Query Frame = 0 

Query: 1   MEKVVSPRTFDLVQ--------KEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEEL 60
           +  +++P +FD           +E L       Q++SI P + +         + +   L
Sbjct: 512 LSSIITPSSFDETNTTSTHSSFRESLSMFESTTQEQSITPTTADSKFDFITTITVESSSL 571

Query: 61  GYLLDALQKMAIIHSLEEEVTSLRTFDSK------------RVIISSLEEEVTSL-RTFD 120
                      +I S  E VT+    DSK             VIISS  E VT++  T +
Sbjct: 572 -----------LISSAPESVTTTTNADSKFDFITTITVEPSSVIISSTPESVTTIFSTSE 631

Query: 121 SAQKEELCYLLDALQKRAIIPSLEEEKRAII-SSLEEEVTSLRTFDSTQKEKLCYLLDAL 180
           S  +EE     +A  K   I ++  E  ++I SS  E VTSL TF+ST +E+     +A 
Sbjct: 632 STTEEEDTTSTNADSKFDFITTITVEPSSVITSSTPESVTSLSTFESTTEEEDTTTTNAD 691

Query: 181 QKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEE 240
            K   I ++  E +S  T  + + V   +            + EEE T+    DS  K +
Sbjct: 692 SKFDFITTITVEPSSVITSSTPESVTTIFSTSE-------STTEEEDTTTTNADS--KLD 751

Query: 241 LCYLLDALQKRAIIPSLEEELTSLRTFDSAQKED 253
               +       II S  E +TSL TF+S  +E+
Sbjct: 752 FITTITVEPSSVIISSTPESVTSLSTFESTTEEE 765

[Close]
BLAST of Moc01g18250.1 vs. ExPASy TrEMBL
Match: A0A1R1PYU5 (Uncharacterized protein OS=Zancudomyces culisetae OX=1213189 GN=AX774_g317 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 72/274 (26.28%), Postives = 113/274 (41.24%), Query Frame = 0 

Query: 1   MEKVVSPRTFDLVQ--------KEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEEL 60
           +  +++P +FD           +E L       Q++SI P + +         + +   L
Sbjct: 512 LSSIITPSSFDETNTTSTHSSFRESLSMFESTTQEQSITPTTADSKFDFITTITVESSSL 571

Query: 61  GYLLDALQKMAIIHSLEEEVTSLRTFDSK------------RVIISSLEEEVTSL-RTFD 120
                      +I S  E VT+    DSK             VIISS  E VT++  T +
Sbjct: 572 -----------LISSAPESVTTTTNADSKFDFITTITVEPSSVIISSTPESVTTIFSTSE 631

Query: 121 SAQKEELCYLLDALQKRAIIPSLEEEKRAII-SSLEEEVTSLRTFDSTQKEKLCYLLDAL 180
           S  +EE     +A  K   I ++  E  ++I SS  E VTSL TF+ST +E+     +A 
Sbjct: 632 STTEEEDTTSTNADSKFDFITTITVEPSSVITSSTPESVTSLSTFESTTEEEDTTTTNAD 691

Query: 181 QKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEE 240
            K   I ++  E +S  T  + + V   +            + EEE T+    DS  K +
Sbjct: 692 SKFDFITTITVEPSSVITSSTPESVTTIFSTSE-------STTEEEDTTTTNADS--KLD 751

Query: 241 LCYLLDALQKRAIIPSLEEELTSLRTFDSAQKED 253
               +       II S  E +TSL TF+S  +E+
Sbjct: 752 FITTITVEPSSVIISSTPESVTSLSTFESTTEEE 765

The following BLAST results are available for this feature:
BLAST of Moc01g18250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
OMH86130.18.0e-0426.28hypothetical protein AX774_g317 [Zancudomyces culisetae][more]
BLAST of Moc01g18250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g18250.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R1PYU53.9e-0426.28Uncharacterized protein OS=Zancudomyces culisetae OX=1213189 GN=AX774_g317 PE=4 ... [more]
BLAST of Moc01g18250.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc01g18250Moc01g18250gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc01g18250.1.exon1Moc01g18250.1.exon1exon
Moc01g18250.1.exon2Moc01g18250.1.exon2exon
Moc01g18250.1.exon3Moc01g18250.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc01g18250.1cds.Moc01g18250.1CDS
cds.Moc01g18250.1cds.Moc01g18250.1_2CDS
cds.Moc01g18250.1cds.Moc01g18250.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc01g18250.1Moc01g18250.1-proteinpolypeptide