Moc01g18250 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g18250
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr1: 12564799 .. 12565979 (+)
RNA-Seq Expression	Moc01g18250
Synteny	Moc01g18250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGGTCCGGAAGGAGGAATTATGTTACCTTTTGGATGCATTATAGAAAAGGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGGCCTAGAAGGAGGAATTATGTTACCTTTTGAATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGACCTAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACAAGTCTGAGAACCTTTGACTTGGCCCAAAGGATGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGTCTCGGCTCAGAAGGAGGAATTATGTTACCTTTTGGATGTATTACAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

mRNA sequence

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Coding sequence (CDS)

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Protein sequence

MEKVVSPRTFDLVQKEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEELGYLLDALQKMAIIHSLEEEVTSLRTFDSKRVIISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSLEEEKRAIISSLEEEVTSLRTFDSTQKEKLCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEEELTSLRTFDSAQKEDLC

Homology

[Close]

BLAST of Moc01g18250 vs. NCBI nr
Match: OMH86130.1 (hypothetical protein AX774_g317 [Zancudomyces culisetae])

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-04
Identity = 72/274 (26.28%), Postives = 113/274 (41.24%), Query Frame = 0


Query: 1   MEKVVSPRTFDLVQ--------KEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEEL 60
           +  +++P +FD           +E L       Q++SI P + +         + +   L
Sbjct: 512 LSSIITPSSFDETNTTSTHSSFRESLSMFESTTQEQSITPTTADSKFDFITTITVESSSL 571

Query: 61  GYLLDALQKMAIIHSLEEEVTSLRTFDSK------------RVIISSLEEEVTSL-RTFD 120
                      +I S  E VT+    DSK             VIISS  E VT++  T +
Sbjct: 572 -----------LISSAPESVTTTTNADSKFDFITTITVEPSSVIISSTPESVTTIFSTSE 631

Query: 121 SAQKEELCYLLDALQKRAIIPSLEEEKRAII-SSLEEEVTSLRTFDSTQKEKLCYLLDAL 180
           S  +EE     +A  K   I ++  E  ++I SS  E VTSL TF+ST +E+     +A 
Sbjct: 632 STTEEEDTTSTNADSKFDFITTITVEPSSVITSSTPESVTSLSTFESTTEEEDTTTTNAD 691

Query: 181 QKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEE 240
            K   I ++  E +S  T  + + V   +            + EEE T+    DS  K +
Sbjct: 692 SKFDFITTITVEPSSVITSSTPESVTTIFSTSE-------STTEEEDTTTTNADS--KLD 751

Query: 241 LCYLLDALQKRAIIPSLEEELTSLRTFDSAQKED 253
               +       II S  E +TSL TF+S  +E+
Sbjct: 752 FITTITVEPSSVIISSTPESVTSLSTFESTTEEE 765

[Close]

BLAST of Moc01g18250 vs. ExPASy TrEMBL
Match: A0A1R1PYU5 (Uncharacterized protein OS=Zancudomyces culisetae OX=1213189 GN=AX774_g317 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 72/274 (26.28%), Postives = 113/274 (41.24%), Query Frame = 0


Query: 1   MEKVVSPRTFDLVQ--------KEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEEL 60
           +  +++P +FD           +E L       Q++SI P + +         + +   L
Sbjct: 512 LSSIITPSSFDETNTTSTHSSFRESLSMFESTTQEQSITPTTADSKFDFITTITVESSSL 571

Query: 61  GYLLDALQKMAIIHSLEEEVTSLRTFDSK------------RVIISSLEEEVTSL-RTFD 120
                      +I S  E VT+    DSK             VIISS  E VT++  T +
Sbjct: 572 -----------LISSAPESVTTTTNADSKFDFITTITVEPSSVIISSTPESVTTIFSTSE 631

Query: 121 SAQKEELCYLLDALQKRAIIPSLEEEKRAII-SSLEEEVTSLRTFDSTQKEKLCYLLDAL 180
           S  +EE     +A  K   I ++  E  ++I SS  E VTSL TF+ST +E+     +A 
Sbjct: 632 STTEEEDTTSTNADSKFDFITTITVEPSSVITSSTPESVTSLSTFESTTEEEDTTTTNAD 691

Query: 181 QKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEE 240
            K   I ++  E +S  T  + + V   +            + EEE T+    DS  K +
Sbjct: 692 SKFDFITTITVEPSSVITSSTPESVTTIFSTSE-------STTEEEDTTTTNADS--KLD 751

Query: 241 LCYLLDALQKRAIIPSLEEELTSLRTFDSAQKED 253
               +       II S  E +TSL TF+S  +E+
Sbjct: 752 FITTITVEPSSVIISSTPESVTSLSTFESTTEEE 765

The following BLAST results are available for this feature:

BLAST of Moc01g18250 vs. NCBI nr


Match Name	E-value	Identity	Description
OMH86130.1	8.0e-04	26.28	hypothetical protein AX774_g317 [Zancudomyces culisetae]	[more]

BLAST of Moc01g18250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g18250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R1PYU5	3.9e-04	26.28	Uncharacterized protein OS=Zancudomyces culisetae OX=1213189 GN=AX774_g317 PE=4 ...	[more]

BLAST of Moc01g18250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g18250.1	Moc01g18250.1	mRNA