MS027540.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS027540.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	polcalcin Ole e 3
Location	scaffold313: 381013 .. 381267 (-)
Sequence length	255
RNA-Seq Expression	MS027540.1
Synteny	MS027540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

mRNA sequence

ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Coding sequence (CDS)

ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Protein sequence

MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

Homology

[Close]

BLAST of MS027540.1 vs. NCBI nr
Match: XP_022141635.1 (polcalcin Bet v 4 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 8.1e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. NCBI nr
Match: XP_038875780.1 (polcalcin Ole e 3 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKISA+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. NCBI nr
Match: XP_004140303.1 (polcalcin Ole e 3 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. NCBI nr
Match: XP_016902555.1 (PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. NCBI nr
Match: XP_022993440.1 (polcalcin Ole e 3-like [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+
Sbjct: 1  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGY 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGL++DVAKIF
Sbjct: 61 ISYEEFTDFARANRGLIRDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-35
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQDK ER+RIFKRFDANGDGKISAAELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFTDF RANRGL+KDVAKIF
Sbjct: 61 FISFQEFTDFGRANRGLLKDVAKIF 85

[Close]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot
Match: O81092 (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-34
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+  E +RIFKRFDANGDGKIS++ELGE LKTLGSVT +E+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          IS+EEFT FARANRGLVKDVAKIF
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot
Match: Q8VWY6 (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+DPQD  +R+RIFKRFD NGDGKIS+AELGE LK LGSVT++EVQ MMAE+DTDGDGF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEF +FARANRGL+KDVAK+F
Sbjct: 61 ISYEEFEEFARANRGLIKDVAKVF 84

[Close]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.2e-33
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 3  DDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS 62
          D PQD  +R+RIFKRFD NGDGKIS++ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64

Query: 63 YEEFTDFARANRGLVKDVAKIF 85
          ++EFTDFARANRGLVKDV+KIF
Sbjct: 65 FDEFTDFARANRGLVKDVSKIF 86

[Close]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot
Match: O81701 (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQD+ E +RIFK FDANGDGKISA+ELG+ALKTLGSVT DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDQAEHERIFKCFDANGDGKISASELGDALKTLGSVTPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFT+FARANRGLVKDVAKIF
Sbjct: 61 FISFQEFTNFARANRGLVKDVAKIF 85

[Close]

BLAST of MS027540.1 vs. ExPASy TrEMBL
Match: A0A6J1CIN1 (polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy TrEMBL
Match: A0A0A0KQB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy TrEMBL
Match: A0A5A7V407 (Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00810 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy TrEMBL
Match: A0A1S4E3J8 (polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of MS027540.1 vs. ExPASy TrEMBL
Match: A0A6J1JYI8 (polcalcin Ole e 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489454 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+
Sbjct: 1  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGY 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGL++DVAKIF
Sbjct: 61 ISYEEFTDFARANRGLIRDVAKIF 84

[Close]

BLAST of MS027540.1 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 )

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISY 63
          D  +K E DRIFK+FDANGDGKISAAEL EALKTLGSVTAD+V+RMMAEIDTDGDG ISY
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNISY 62

Query: 64 EEFTDFARANRGLVKDVAKIF 85
          +EFTDFA ANRGL+KDVAKIF
Sbjct: 63 QEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of MS027540.1 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-31
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISY 63
          D  +K E DRIFK+FDANGDGKISAAELG+ALK LGSVT ++++RMMAEIDTDGDG+ISY
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISY 62

Query: 64 EEFTDFARANRGLVKDVAKIF 85
          +EF DFA ANRGL+KDVAKIF
Sbjct: 63 QEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of MS027540.1 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 5  PQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISY 64
          P   +E  ++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ 
Sbjct: 15 PSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQ 74

Query: 65 EEFTDFARANRGLVK 79
          EEF    R++   V+
Sbjct: 75 EEFATICRSSSSAVE 89

[Close]

BLAST of MS027540.1 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFIS 63
          D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+
Sbjct: 17 DMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN 76

Query: 64 YEEFTDFARAN 74
           +EF+   R++
Sbjct: 77 LDEFSTLCRSS 87

[Close]

BLAST of MS027540.1 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFIS 63
          D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+
Sbjct: 17 DMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN 76

Query: 64 YEEFTDFARAN 74
           +EF+   R++
Sbjct: 77 LDEFSTLCRSS 87

The following BLAST results are available for this feature:

BLAST of MS027540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141635.1	8.1e-38	100.00	polcalcin Bet v 4 [Momordica charantia]	[more]
XP_038875780.1	4.5e-36	95.24	polcalcin Ole e 3 [Benincasa hispida]	[more]
XP_004140303.1	4.5e-36	95.24	polcalcin Ole e 3 [Cucumis sativus]	[more]
XP_016902555.1	1.0e-35	94.05	PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cuc...	[more]
XP_022993440.1	1.2e-33	88.10	polcalcin Ole e 3-like [Cucurbita maxima]	[more]

BLAST of MS027540.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39419	5.1e-35	87.06	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
O81092	4.3e-34	84.52	Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1	[more]
Q8VWY6	6.3e-33	79.76	Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1	[more]
Q84V36	8.2e-33	82.93	Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1	[more]
O81701	1.1e-32	83.53	Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1	[more]

BLAST of MS027540.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIN1	3.9e-38	100.00	polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1	[more]
A0A0A0KQB8	2.2e-36	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1	[more]
A0A5A7V407	4.8e-36	94.05	Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00...	[more]
A0A1S4E3J8	4.8e-36	94.05	polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1	[more]
A0A6J1JYI8	5.9e-34	88.10	polcalcin Ole e 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489454 PE=4 SV=1	[more]

BLAST of MS027540.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17480.1	2.4e-32	83.95	pollen calcium-binding protein 1	[more]
AT3G03430.1	3.5e-31	77.78	Calcium-binding EF-hand family protein	[more]
AT1G73630.1	3.3e-13	46.67	EF hand calcium-binding protein family	[more]
AT1G18210.1	9.0e-11	43.66	Calcium-binding EF-hand family protein	[more]
AT1G18210.2	9.0e-11	43.66	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 45..73 e-value: 2.2E-6 score: 37.2 coord: 10..38 e-value: 9.1E-5 score: 31.8
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 13..70 e-value: 3.9E-15 score: 56.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 6..41 score: 14.206556
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 44..76 score: 12.672309
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 13..71 e-value: 7.23488E-17 score: 65.6469
None	No IPR available	GENE3D	1.10.238.10		coord: 2..84 e-value: 4.6E-27 score: 95.8
None	No IPR available	PANTHER	PTHR23064:SF60	POLCALCIN NIC T 1	coord: 1..84
None	No IPR available	PANTHER	PTHR23064	TROPONIN	coord: 1..84
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 54..66
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 19..31
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 13..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS027540	MS027540	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS027540.1-cds	MS027540.1-cds-scaffold313:381013..381267	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS027540.1	MS027540.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding