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MS027540 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF Homology
BLAST of MS027540 vs. NCBI nr
Match: XP_022141635.1 (polcalcin Bet v 4 [Momordica charantia]) HSP 1 Score: 166.8 bits (421), Expect = 8.1e-38 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of MS027540 vs. NCBI nr
Match: XP_038875780.1 (polcalcin Ole e 3 [Benincasa hispida]) HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36 Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. NCBI nr
Match: XP_004140303.1 (polcalcin Ole e 3 [Cucumis sativus]) HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36 Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. NCBI nr
Match: XP_016902555.1 (PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cucumis melo var. makuwa]) HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35 Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. NCBI nr
Match: XP_022993440.1 (polcalcin Ole e 3-like [Cucurbita maxima]) HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33 Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 5.1e-35 Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0
BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: O81092 (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 4.3e-34 Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q8VWY6 (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33 Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 8.2e-33 Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 0
BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: O81701 (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32 Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A6J1CIN1 (polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A0A0KQB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36 Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A5A7V407 (Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00810 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36 Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A1S4E3J8 (polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36 Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A6J1JYI8 (polcalcin Ole e 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489454 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34 Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of MS027540 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 ) HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32 Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0
BLAST of MS027540 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 131.3 bits (329), Expect = 3.5e-31 Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0
BLAST of MS027540 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family ) HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0
BLAST of MS027540 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0
BLAST of MS027540 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein ) HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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