MS027540 (gene) Bitter gourd (TR) v1

Overview
NameMS027540
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolcalcin Ole e 3
Locationscaffold313: 381013 .. 381267 (-)
RNA-Seq ExpressionMS027540
SyntenyMS027540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

mRNA sequence

ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Coding sequence (CDS)

ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Protein sequence

MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Homology
BLAST of MS027540 vs. NCBI nr
Match: XP_022141635.1 (polcalcin Bet v 4 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 8.1e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. NCBI nr
Match: XP_038875780.1 (polcalcin Ole e 3 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKISA+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. NCBI nr
Match: XP_004140303.1 (polcalcin Ole e 3 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. NCBI nr
Match: XP_016902555.1 (PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. NCBI nr
Match: XP_022993440.1 (polcalcin Ole e 3-like [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+
Sbjct: 1  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGY 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGL++DVAKIF
Sbjct: 61 ISYEEFTDFARANRGLIRDVAKIF 84

BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-35
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQDK ER+RIFKRFDANGDGKISAAELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFTDF RANRGL+KDVAKIF
Sbjct: 61 FISFQEFTDFGRANRGLLKDVAKIF 85

BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: O81092 (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-34
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+  E +RIFKRFDANGDGKIS++ELGE LKTLGSVT +E+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          IS+EEFT FARANRGLVKDVAKIF
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q8VWY6 (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+DPQD  +R+RIFKRFD NGDGKIS+AELGE LK LGSVT++EVQ MMAE+DTDGDGF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEF +FARANRGL+KDVAK+F
Sbjct: 61 ISYEEFEEFARANRGLIKDVAKVF 84

BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.2e-33
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 3  DDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS 62
          D PQD  +R+RIFKRFD NGDGKIS++ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64

Query: 63 YEEFTDFARANRGLVKDVAKIF 85
          ++EFTDFARANRGLVKDV+KIF
Sbjct: 65 FDEFTDFARANRGLVKDVSKIF 86

BLAST of MS027540 vs. ExPASy Swiss-Prot
Match: O81701 (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQD+ E +RIFK FDANGDGKISA+ELG+ALKTLGSVT DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDQAEHERIFKCFDANGDGKISASELGDALKTLGSVTPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFT+FARANRGLVKDVAKIF
Sbjct: 61 FISFQEFTNFARANRGLVKDVAKIF 85

BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A6J1CIN1 (polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A0A0KQB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A5A7V407 (Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00810 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A1S4E3J8 (polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of MS027540 vs. ExPASy TrEMBL
Match: A0A6J1JYI8 (polcalcin Ole e 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489454 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+
Sbjct: 1  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGY 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGL++DVAKIF
Sbjct: 61 ISYEEFTDFARANRGLIRDVAKIF 84

BLAST of MS027540 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 )

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISY 63
          D  +K E DRIFK+FDANGDGKISAAEL EALKTLGSVTAD+V+RMMAEIDTDGDG ISY
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNISY 62

Query: 64 EEFTDFARANRGLVKDVAKIF 85
          +EFTDFA ANRGL+KDVAKIF
Sbjct: 63 QEFTDFAGANRGLMKDVAKIF 83

BLAST of MS027540 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-31
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISY 63
          D  +K E DRIFK+FDANGDGKISAAELG+ALK LGSVT ++++RMMAEIDTDGDG+ISY
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISY 62

Query: 64 EEFTDFARANRGLVKDVAKIF 85
          +EF DFA ANRGL+KDVAKIF
Sbjct: 63 QEFIDFASANRGLMKDVAKIF 83

BLAST of MS027540 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 5  PQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISY 64
          P   +E  ++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ 
Sbjct: 15 PSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQ 74

Query: 65 EEFTDFARANRGLVK 79
          EEF    R++   V+
Sbjct: 75 EEFATICRSSSSAVE 89

BLAST of MS027540 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFIS 63
          D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+
Sbjct: 17 DMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN 76

Query: 64 YEEFTDFARAN 74
           +EF+   R++
Sbjct: 77 LDEFSTLCRSS 87

BLAST of MS027540 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 4  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFIS 63
          D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+
Sbjct: 17 DMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN 76

Query: 64 YEEFTDFARAN 74
           +EF+   R++
Sbjct: 77 LDEFSTLCRSS 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141635.18.1e-38100.00polcalcin Bet v 4 [Momordica charantia][more]
XP_038875780.14.5e-3695.24polcalcin Ole e 3 [Benincasa hispida][more]
XP_004140303.14.5e-3695.24polcalcin Ole e 3 [Cucumis sativus][more]
XP_016902555.11.0e-3594.05PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cuc... [more]
XP_022993440.11.2e-3388.10polcalcin Ole e 3-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q394195.1e-3587.06Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1[more]
O810924.3e-3484.52Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1[more]
Q8VWY66.3e-3379.76Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1[more]
Q84V368.2e-3382.93Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1[more]
O817011.1e-3283.53Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1CIN13.9e-38100.00polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1[more]
A0A0A0KQB82.2e-3695.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1[more]
A0A5A7V4074.8e-3694.05Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00... [more]
A0A1S4E3J84.8e-3694.05polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1[more]
A0A6J1JYI85.9e-3488.10polcalcin Ole e 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489454 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17480.12.4e-3283.95pollen calcium-binding protein 1 [more]
AT3G03430.13.5e-3177.78Calcium-binding EF-hand family protein [more]
AT1G73630.13.3e-1346.67EF hand calcium-binding protein family [more]
AT1G18210.19.0e-1143.66Calcium-binding EF-hand family protein [more]
AT1G18210.29.0e-1143.66Calcium-binding EF-hand family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 45..73
e-value: 2.2E-6
score: 37.2
coord: 10..38
e-value: 9.1E-5
score: 31.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 13..70
e-value: 3.9E-15
score: 56.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 6..41
score: 14.206556
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 44..76
score: 12.672309
IPR002048EF-hand domainCDDcd00051EFhcoord: 13..71
e-value: 7.23488E-17
score: 65.6469
NoneNo IPR availableGENE3D1.10.238.10coord: 2..84
e-value: 4.6E-27
score: 95.8
NoneNo IPR availablePANTHERPTHR23064:SF60POLCALCIN NIC T 1coord: 1..84
NoneNo IPR availablePANTHERPTHR23064TROPONINcoord: 1..84
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 54..66
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 19..31
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 13..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027540.1MS027540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding