MS021948.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA YCLLLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYALVYASNFFPLLTNRKNDK Homology
BLAST of MS021948.1 vs. NCBI nr
Match: RVW30961.1 (Protein chromatin remodeling 20 [Vitis vinifera]) HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15 Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0
BLAST of MS021948.1 vs. NCBI nr
Match: KAG7020999.1 (Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. NCBI nr
Match: XP_022937760.1 (protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]) HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. NCBI nr
Match: XP_022965425.1 (protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima]) HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. NCBI nr
Match: XP_022965424.1 (protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima]) HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2) HSP 1 Score: 85.5 bits (210), Expect = 2.8e-16 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy Swiss-Prot
Match: A4IHD2 (Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08 Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy Swiss-Prot
Match: Q9Y4B4 (Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4) HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07 Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy Swiss-Prot
Match: Q99NG0 (Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07 Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy Swiss-Prot
Match: P46100 (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5) HSP 1 Score: 53.9 bits (128), Expect = 9.1e-07 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy TrEMBL
Match: A0A0A0LH69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G076020 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16 Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy TrEMBL
Match: A0A438D6A1 (Protein chromatin remodeling 20 OS=Vitis vinifera OX=29760 GN=ATRX_2 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15 Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy TrEMBL
Match: A0A6J1HQY8 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy TrEMBL
Match: A0A6J1HNN1 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. ExPASy TrEMBL
Match: A0A6J1HLN1 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of MS021948.1 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
BLAST of MS021948.1 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
BLAST of MS021948.1 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
BLAST of MS021948.1 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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