MS021948 (gene) Bitter gourd (TR) v1

Overview


Name	MS021948
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent helicase ATRX
Location	scaffold110: 522205 .. 522432 (+)
RNA-Seq Expression	MS021948
Synteny	MS021948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA

mRNA sequence

TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA

Coding sequence (CDS)

TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAAATGATAAA

Protein sequence

YCLLLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYALVYASNFFPLLTNRKNDK

Homology

[Close]

BLAST of MS021948 vs. NCBI nr
Match: RVW30961.1 (Protein chromatin remodeling 20 [Vitis vinifera])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL 60
           Q++GIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV  S +S + ++L
Sbjct: 436 QITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVLRSFLSIIPFSL 489

[Close]

BLAST of MS021948 vs. NCBI nr
Match: KAG7020999.1 (Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 686 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 738

[Close]

BLAST of MS021948 vs. NCBI nr
Match: XP_022937760.1 (protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 509 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 561

[Close]

BLAST of MS021948 vs. NCBI nr
Match: XP_022965425.1 (protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 719 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 771

[Close]

BLAST of MS021948 vs. NCBI nr
Match: XP_022965424.1 (protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 721 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 773

[Close]

BLAST of MS021948 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of MS021948 vs. ExPASy Swiss-Prot
Match: A4IHD2 (Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q+ GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QV
Sbjct: 273 QIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQV 313

[Close]

BLAST of MS021948 vs. ExPASy Swiss-Prot
Match: Q9Y4B4 (Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q+ GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 275 QIGGIRFLYDNLVESLERFKT-SSGFGCILAHSMGLGKTLQV 315

[Close]

BLAST of MS021948 vs. ExPASy Swiss-Prot
Match: Q99NG0 (Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q+ GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 274 QIGGIRFLYDNLVESLERFKT-SSGFGCILAHSMGLGKTLQV 314

[Close]

BLAST of MS021948 vs. ExPASy Swiss-Prot
Match: P46100 (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-07
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 6    QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
            QV G++FMW+   +S++K K    G GCILAH MGLGKT QV
Sbjct: 1564 QVDGVQFMWDCCCESVKKTKK-SPGSGCILAHCMGLGKTLQV 1604

[Close]

BLAST of MS021948 vs. ExPASy TrEMBL
Match: A0A0A0LH69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G076020 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 4  LLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGS 51
          LLQ+SGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVF S
Sbjct: 4  LLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVS 50

[Close]

BLAST of MS021948 vs. ExPASy TrEMBL
Match: A0A438D6A1 (Protein chromatin remodeling 20 OS=Vitis vinifera OX=29760 GN=ATRX_2 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL 60
           Q++GIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV  S +S + ++L
Sbjct: 436 QITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVLRSFLSIIPFSL 489

[Close]

BLAST of MS021948 vs. ExPASy TrEMBL
Match: A0A6J1HQY8 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 721 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 773

[Close]

BLAST of MS021948 vs. ExPASy TrEMBL
Match: A0A6J1HNN1 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 719 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 771

[Close]

BLAST of MS021948 vs. ExPASy TrEMBL
Match: A0A6J1HLN1 (ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL 56
           QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Sbjct: 629 QVSGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNV 681

[Close]

BLAST of MS021948 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of MS021948 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of MS021948 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of MS021948 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

The following BLAST results are available for this feature:

BLAST of MS021948 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW30961.1	3.0e-15	79.63	Protein chromatin remodeling 20 [Vitis vinifera]	[more]
KAG7020999.1	8.8e-15	83.02	Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937760.1	8.8e-15	83.02	protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]	[more]
XP_022965425.1	8.8e-15	83.02	protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima]	[more]
XP_022965424.1	8.8e-15	83.02	protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS021948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW51	2.8e-16	92.86	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=...	[more]
A4IHD2	4.8e-08	57.14	Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1	[more]
Q9Y4B4	1.4e-07	54.76	Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4	[more]
Q99NG0	1.4e-07	54.76	Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1	[more]
P46100	9.1e-07	57.14	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5	[more]

BLAST of MS021948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH69	1.7e-16	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G076020 PE=3 SV=1	[more]
A0A438D6A1	1.5e-15	79.63	Protein chromatin remodeling 20 OS=Vitis vinifera OX=29760 GN=ATRX_2 PE=3 SV=1	[more]
A0A6J1HQY8	4.2e-15	83.02	ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=...	[more]
A0A6J1HNN1	4.2e-15	83.02	ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=...	[more]
A0A6J1HLN1	4.2e-15	83.02	ATP-dependent helicase ATRX OS=Cucurbita maxima OX=3661 GN=LOC111465339 PE=3 SV=...	[more]

BLAST of MS021948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08600.1	2.0e-17	92.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.3	2.0e-17	92.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.4	2.0e-17	92.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.2	2.0e-17	92.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 4..67 e-value: 2.2E-12 score: 48.2
IPR044574	ATPase ARIP4-like	PANTHER	PTHR45797	RAD54-LIKE	coord: 6..48
None	No IPR available	PANTHER	PTHR45797:SF1	RAD54-LIKE	coord: 6..48
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021948.1	MS021948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016887	ATP hydrolysis activity