MS021906.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGCAGCAATTAACCCTCCAACATCCTGCTGTCCGCAGTAAACTGGGATTGCCTTTGAAGGATGCTCCTGTGGGCACCAATAATCCAGGAAAAGCACCGTTGGATACACCCACCAAGTGGAAAAGAATTTCTGTAGAGAAGTTGTCTCCTAAAGAATTGCTTGCTGTAAATTATGCTGAGCTCAATTTTCTTTTTATTTGATTCGAGTAAATGTAATACAAACGTTATAAGGTTGCTAATGATTAAACTTGACAGTTATCTGTCCAACTCCTATCAAAAGGGCAAAAGGAAAGGGCTATTCCTTTACTGAGGTAAGATCTTGTCTTCCCTCTTTAGATTCCACTATCATCTATATGGGCCTCTCTGGCGGGTGATTTTTTGCCCTAAATTGCAAGGAGAAGGTAACAAAAAAGGTTACACATGACTAATTTAATAATTTAGACAGGCACTTAACAAGGAACCTGAGTATGTTCGAGCTCTGATTGTCATGGGACAAACTCTGTTACAAAGTGGTCAACCTGAAGAGGCTACTGAATACCTAGAGCGTGCAATTTCCAAGGTCTGTATTTAAGTGTTGTATTTTATTTTTCTTATTTGTGTATGATGAATCTTGCTCCTACATGGTATGATGTGTTGACAATTATTGGTGTTCTAGATAATAGTATATGACGATTTCCAGAATTGAGAGTATGATCACCCTTTTCATTGAATTGGATGAGATGAAAAACCTAATTTGGGGAGAGAGCTAATGAACAAGAAAGGAAAAACTTCCAGAAGTAACCAACTTAACAAGGAAAGAAAGGAAAAGAAAAAAAGGAAAAGAAAGAAACGAGCATTTTGCCCAACGAAGAAAAATAAACGAGGAGAAATGATGTACGTAGGGAAAATAATATAATAAAATGGAGAAAAGGGATCTTGGTTCAGAAGGTCATGGGGCCAAGTGGAATCTTTTAAGGGCCTTTTGACAACTCCCCTCGTTATTAAACTTGGCTTGTTTATTTAAGTTGTTTTTTTTCCTTTTTCTTTCTTTTTAACGACGAGGAGTTGGAGCTTTGCTCCCCATACCCAGGAGCACCCATGCCCACCCATGCCCACCCGAAGGCCCGGATCCGGGAGACATTAAGGATTTTTTAATAAAGGGATGCGGATATCTTCATTTTGTATCTATGTCGATATGTAGCTAGGAAGTGCTTTTGTCCTCAATTTTCTATTTGCTGAAGTAGTGATAAATCTCCACATATTTTATATGATCATGATATATAGGATCTTTGTTGCTCATGGCTACTTGGTTTTGACAAGAAGTCTCCAGTAGTTCCTCTAATGTTTTCTTAGTCAATTAGGATTCCTTGAAGTCATTTTCCTTCGCATATTTCTTGCCCTAGTGGTTTTAATTCAGGTTCTACATACTCCTTGACACAACTAACTGTCTCTTACTTCTCCATGTTAGTTTTACCAAACAAAGGAACAATATCTCGTGGTTGACCTTCTACAGACTTTCAAGCTTTCTCAATCAGCATCACTGTAGATTTTGACATTTCTTATTGTTTTTTTAAGTACAAACCTTCTCAAGTTGTTACTTTTAAGTATCTCAAGATTCTGAAAACAATCTTTATACTCTTTAGTGGGATTATGTATAAATTGACTTGCATAACTAACTACCAAATGCATATCAAAATCTAGTGTGATTGAGGTAAATATTGCTTTGTTAATTGGTATATTTTCCTTGCTAAATTAGGATTAGGATCAAGAGGAGTACTACTAGGTTTACAGCCGAACGTGCATGTTTCTTTAGAAGATCGAGGACATATTCTCTTTAAGACATGCACAAATTTTTCTTTGAACGAGTCACTTCTATACCTCAAGACCTTCTAAGTCTATTACTTGGAACTCCTTGGCCAGGAGCTTTTTTTAAATCTCTTATTTCTTCATGGTTTCCAATAAAGATAATGTCATCCAGTTAGACAATGATAATAGCTATTTTTATTTTATGAGAATATTTGACAAAAACCATGTGATCAGATTTACATCGCAAGTTTCGTCTTCCTTTTACAGCTCTAGAAAAATTTTCAAACCACGCTTTTGGGATTGTTCCAAGTGATATCGGGCCTTCCTAAGTTTGCACGGTTTATTGGTGGTCTTTGGAGTTTCTATACCTGCATGAATATCCATGTTTACCTCTTTTGCTAGATCACTAGCCATGTATCCTTATTTTGCTGGGTCACTGTTGAGAAATAATTTTTGTATGTCTAATTAGTGAACAACCTATTGTTATTCACTCACAAAGAGAGAATAATATAGAAATTTAGGGTGCGTTTGGTTGGTGATCTGAAAATAGGGGATTTAATAAAAAATAGAGTTGTATTCTTTATTTTCAGTATTTTTAGATATGTGTTTGGCAGCATATTTGAAAATTGAATCTCAATTTAAAAAATTGTTCAATAAATGTTTAGTAATATATTTGTAAACTAGTGGTAGTTACCAACTAAATATTTAGTACAATTAACATTAACATAAAAATATTTATGAATATTAGAAATCTCATTAGTCTTACCGGTTAAGATTCAAAGAAGGATACATCCGGGATTATGTAGAATTTTCTATAAGTTGGTGGGTAACATTTGTATCCCTTTTGATTTGTAGCATAGACAAAAATATATGCACTTGATGGCCTTAATATCAAGCTTACTTCTCTTGAATAGAAGTCATACACTTAAAAATGCAAAAATGAATTTGAGAGAGGTGTCCAGAATTGGAAGGTGCTCAAGAAGTAATTGGTTCGAGTATAAAGATTTTTCAGAATTAAGAATAGAATCACCATTTTTTTTCTCTTTTTTGAGTTGGACCAGATTTACAACCTGATCTAAGGAGAGAGCTAATGTACAATAAAGGAAATAGTTCTAATGGTAATTAAGTTAACTAGGAAGGAAAGTAAAAGAAAGAAATGGGTATGTTATTTAAGGAAATAAAAATAAAGGGATGAGAAATTTGATAGAACCCGAATGCTAACAATATATTGAAATATAAAAGATAGAATAACTACAATATCATCCAAAGTAATTCGAGGTACTTGGACCCTCCCCTCTCTTGAGTATTCCTTCTCAAGCCTAAACGATGCTACCAATTGCTTACCTTCATCCTTCCCCCGTCACCTTATTTATAAACAAACTCCCTAACCTAATTACTAATATACCCTTAATACCCTAATAATATCACCAGACTATCCTAATAGCAATCCTATCATTATTATTGACTTAAAGGAAAACAATAAAAAAAAAAATATAAAAAGGGGGATCTTAGTCCGTAGGTCACCAGAAAAAGATCCTTTCTTGGAAGAGCTTTTTAACTGTATAGCATGTATGGTACTATCATGTTACCTTTACCTCATCTCTTACATCCCTGAACAAGACGCATGCTTTTAAACGCAATTTAGATATTTTTGATACTCATTTTTTCTCCTCTCTTATTTTAACTAAAACATTAGTTGTTTCTTGTTCAGTTATTTCTTTCCGGTCGTCCCATGGAAGTCGAGGGTGTAGATCTTCTAATTCTTGCTTCCCAATGGGCAGGAGTTGCCAGTATAAGGCAGGTGAGAATAGTCCATGTTTTATTTATGTACCCTTGTCCATGTTTTATTTATTTACCCTATGGCTATTAACAAGGAGATCAAGGTAGTTTGAATCATATCTGTTTATTAGAAACATTCTCCACAACTGTTTATTTACAGCTTGTTATAGAGAATTTAAACATAACTAGGATGGACGTTATCATATAATGTTGATATTTTAATTTTGAAATTCGGTAAATTTTCTTAAGCTTTATGAAGTTCAAATCTTTATTTCCAATGATCCACCAACATTTCATGAAATTCTCATATGTGGACATGTCAGTCAATATGTTTCAGCATTGGACAACCAGCACACATGAATTTTATGATTGGCATGTCTGAGGATAGTTGGAAATGAAGATTTTTTTTCAAGAACAATGAATTTCATCCTTGTACAACTGTGGTTTACCTGTAGCTGGTAAACCACCAGACATTTCAATTTGAAGTGAAATTCATGGTTTCTTTTGGTTGATCTGGGCAATAACCGTCTTGATGAAGTTGATGTTTTGTAGGGTTTATCCCTAGACCTAGCAGTTTGTCATTGCATCACTTTTTTCTTGGATACTTTGACGTAATATCCAAATATCTTTTTCGAGGCTCAGATTGTGACTATTGATTATGTTATAATAACAAAATTTCTCTTCATTATTGTTGTGTCAGGGGAAAATGGTAGAAGGGATTGCCCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAAGCAAAGAGCAAAGCCCATTATTACGATGGTTTGGTTCTGCTAGCAAGGTTTGAATCAGACCAGTCTATCAGATTCATCTTTCACTTACCACCCATTACCAATGGGGCTTTTTATATTAAAATTTTATTATTATTATTTTTAAAGATCCCACCCTCCCTTTTGTTAAGAAAATGGAAGTGATAAAAATATTGCAGAAGCAATAATAAAAATCTCAATGATGAATAATGAGGAAAAATGAATATAAGAGTATAATTTCAATAGAAGAAGAATTCAAACTTCTAATTGAAGTGATACAAAATTGAATGGTACAAAATCTGGTGATACAAAAAATGTTTTAAAAAGCCTTCCCACTGAAACCTTTAAACTTATTTGAGATTAACAACTTAGAAACTTAAAAACGATAAAAACATTAATGATAAATGTTTGAAGTGGAAACTTAAAGACTTGAAACTGAATGATTAAATCTAACAATAAAGTAGGAAACTTAAAAAATACTAACCGAAATTTAATGCAACTTTAGTTAAGAAAAATATCAAATCTCAACAACTTCCCTCAACAAGAACTCAAAATTTACCTGCGCTTGAAATTTACTAAAATCTTATTTCTTGTCATTTCAGTGCTCTATACAATGAAGGTCGCAAGGCTGAAGCTACCAAATACTTACAGTTAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAGGATGATAATGATAAATTAGTCAGCGATCTCGTCAGCAGCAGGAGAGGAGATTAT TTGCAGCAATTAACCCTCCAACATCCTGCTGTCCGCAGTAAACTGGGATTGCCTTTGAAGGATGCTCCTGTGGGCACCAATAATCCAGGAAAAGCACCGTTGGATACACCCACCAAGTGGAAAAGAATTTCTGTAGAGAAGTTGTCTCCTAAAGAATTGCTTGCTTTATCTGTCCAACTCCTATCAAAAGGGCAAAAGGAAAGGGCTATTCCTTTACTGAGACAGGCACTTAACAAGGAACCTGAGTATGTTCGAGCTCTGATTGTCATGGGACAAACTCTGTTACAAAGTGGTCAACCTGAAGAGGCTACTGAATACCTAGAGCGTGCAATTTCCAAGTTATTTCTTTCCGGTCGTCCCATGGAAGTCGAGGGTGTAGATCTTCTAATTCTTGCTTCCCAATGGGCAGGAGTTGCCAGTATAAGGCAGGGGAAAATGGTAGAAGGGATTGCCCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAAGCAAAGAGCAAAGCCCATTATTACGATGGTTTGGTTCTGCTAGCAAGTGCTCTATACAATGAAGGTCGCAAGGCTGAAGCTACCAAATACTTACAGTTAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAGGATGATAATGATAAATTAGTCAGCGATCTCGTCAGCAGCAGGAGAGGAGATTAT TTGCAGCAATTAACCCTCCAACATCCTGCTGTCCGCAGTAAACTGGGATTGCCTTTGAAGGATGCTCCTGTGGGCACCAATAATCCAGGAAAAGCACCGTTGGATACACCCACCAAGTGGAAAAGAATTTCTGTAGAGAAGTTGTCTCCTAAAGAATTGCTTGCTTTATCTGTCCAACTCCTATCAAAAGGGCAAAAGGAAAGGGCTATTCCTTTACTGAGACAGGCACTTAACAAGGAACCTGAGTATGTTCGAGCTCTGATTGTCATGGGACAAACTCTGTTACAAAGTGGTCAACCTGAAGAGGCTACTGAATACCTAGAGCGTGCAATTTCCAAGTTATTTCTTTCCGGTCGTCCCATGGAAGTCGAGGGTGTAGATCTTCTAATTCTTGCTTCCCAATGGGCAGGAGTTGCCAGTATAAGGCAGGGGAAAATGGTAGAAGGGATTGCCCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAAGCAAAGAGCAAAGCCCATTATTACGATGGTTTGGTTCTGCTAGCAAGTGCTCTATACAATGAAGGTCGCAAGGCTGAAGCTACCAAATACTTACAGTTAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAGGATGATAATGATAAATTAGTCAGCGATCTCGTCAGCAGCAGGAGAGGAGATTAT LQQLTLQHPAVRSKLGLPLKDAPVGTNNPGKAPLDTPTKWKRISVEKLSPKELLALSVQLLSKGQKERAIPLLRQALNKEPEYVRALIVMGQTLLQSGQPEEATEYLERAISKLFLSGRPMEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEAKSKAHYYDGLVLLASALYNEGRKAEATKYLQLAAAYNPAYKEYLDQCEDDNDKLVSDLVSSRRGDY Homology
BLAST of MS021906.1 vs. NCBI nr
Match: XP_022144503.1 (ALBINO3-like protein 2, chloroplastic [Momordica charantia]) HSP 1 Score: 445.7 bits (1145), Expect = 2.5e-121 Identity = 228/231 (98.70%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of MS021906.1 vs. NCBI nr
Match: XP_038890165.1 (ALBINO3-like protein 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 412.5 bits (1059), Expect = 2.3e-111 Identity = 215/237 (90.72%), Postives = 220/237 (92.83%), Query Frame = 0
BLAST of MS021906.1 vs. NCBI nr
Match: XP_023546234.1 (ALBINO3-like protein 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-110 Identity = 213/237 (89.87%), Postives = 220/237 (92.83%), Query Frame = 0
BLAST of MS021906.1 vs. NCBI nr
Match: XP_022933144.1 (ALBINO3-like protein 2, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 407.5 bits (1046), Expect = 7.5e-110 Identity = 212/237 (89.45%), Postives = 219/237 (92.41%), Query Frame = 0
BLAST of MS021906.1 vs. NCBI nr
Match: XP_022973910.1 (ALBINO3-like protein 2, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109 Identity = 211/237 (89.03%), Postives = 218/237 (91.98%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy Swiss-Prot
Match: Q8L718 (ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALB3L2 PE=2 SV=2) HSP 1 Score: 226.1 bits (575), Expect = 4.1e-58 Identity = 125/236 (52.97%), Postives = 169/236 (71.61%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy Swiss-Prot
Match: Q0WUC5 (ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALB3L3 PE=1 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 9.1e-58 Identity = 125/223 (56.05%), Postives = 160/223 (71.75%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy TrEMBL
Match: A0A6J1CTF9 (ALBINO3-like protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014174 PE=3 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121 Identity = 228/231 (98.70%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy TrEMBL
Match: A0A6J1EYX9 (ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439944 PE=3 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 3.7e-110 Identity = 212/237 (89.45%), Postives = 219/237 (92.41%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy TrEMBL
Match: A0A6J1ICK0 (ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472541 PE=3 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109 Identity = 211/237 (89.03%), Postives = 218/237 (91.98%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy TrEMBL
Match: A0A1S3B4X9 (ALBINO3-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485819 PE=3 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109 Identity = 209/237 (88.19%), Postives = 219/237 (92.41%), Query Frame = 0
BLAST of MS021906.1 vs. ExPASy TrEMBL
Match: A0A5D3DG53 (ALBINO3-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001350 PE=3 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 5.3e-109 Identity = 208/235 (88.51%), Postives = 217/235 (92.34%), Query Frame = 0
BLAST of MS021906.1 vs. TAIR 10
Match: AT1G65080.1 (Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ) HSP 1 Score: 226.1 bits (575), Expect = 2.9e-59 Identity = 125/236 (52.97%), Postives = 169/236 (71.61%), Query Frame = 0
BLAST of MS021906.1 vs. TAIR 10
Match: AT3G44370.1 (Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ) HSP 1 Score: 224.9 bits (572), Expect = 6.5e-59 Identity = 125/223 (56.05%), Postives = 160/223 (71.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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