MS016719.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016719.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold563: 305328 .. 305533 (+)
Sequence length	204
RNA-Seq Expression	MS016719.1
Synteny	MS016719.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATTTGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

mRNA sequence

TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

Coding sequence (CDS)

TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

Protein sequence

LGLGFIARVYSFRSVGVYGGANCGSARLGLSQNKYGRCGYDFRHGPPSATAGSFGGLIDGNPIVSLFL

Homology

[Close]

BLAST of MS016719.1 vs. NCBI nr
Match: KGN58779.1 (hypothetical protein Csa_000887 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  LGLGFIARVYSFRSVGV---YGGANCGSARLGLSQNKY-GRCGYDFRHGPPSATAGSFGG 60
          +G+G I RV SFRSV     YG    GS+R+ + +NKY GRCGYDF  GP   TAGSFG 
Sbjct: 1  MGVGLITRVNSFRSVESCIGYGWVGVGSSRICICKNKYFGRCGYDFGDGPRPETAGSFGT 60

Query: 61 LIDGNPIVSLF 68
          LIDGN +VS F
Sbjct: 61 LIDGNSVVSFF 71

[Close]

BLAST of MS016719.1 vs. ExPASy TrEMBL
Match: A0A0A0LCV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731890 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  LGLGFIARVYSFRSVGV---YGGANCGSARLGLSQNKY-GRCGYDFRHGPPSATAGSFGG 60
          +G+G I RV SFRSV     YG    GS+R+ + +NKY GRCGYDF  GP   TAGSFG 
Sbjct: 1  MGVGLITRVNSFRSVESCIGYGWVGVGSSRICICKNKYFGRCGYDFGDGPRPETAGSFGT 60

Query: 61 LIDGNPIVSLF 68
          LIDGN +VS F
Sbjct: 61 LIDGNSVVSFF 71

The following BLAST results are available for this feature:

BLAST of MS016719.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58779.1	3.4e-10	57.75	hypothetical protein Csa_000887 [Cucumis sativus]	[more]

BLAST of MS016719.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016719.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCV2	1.7e-10	57.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731890 PE=4 SV=1	[more]

BLAST of MS016719.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016719	MS016719	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016719.1-cds	MS016719.1-cds-scaffold563:305328..305432	CDS
MS016719.1-cds	MS016719.1-cds-scaffold563:305435..305533	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016719.1	MS016719.1-protein	polypeptide