MS016719 (gene) Bitter gourd (TR) v1

Overview
NameMS016719
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold563: 305328 .. 305533 (+)
RNA-Seq ExpressionMS016719
SyntenyMS016719
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATTTGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

mRNA sequence

TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

Coding sequence (CDS)

TTGGGGTTAGGCTTCATTGCGCGCGTGTATAGCTTTAGAAGCGTGGGAGTTTATGGCGGGGCCAATTGCGGCTCAGCTCGGCTCGGCTTGAGCCAAAACAAATATGGTCGCTGCGGCTATGATTTCAGACATGGGCCTCCTTCAGCAACTGCCGGCTCATTCGGCGGTCTAATTGATGGAAATCCGATCGTATCTCTTTTTCTC

Protein sequence

LGLGFIARVYSFRSVGVYGGANCGSARLGLSQNKYGRCGYDFRHGPPSATAGSFGGLIDGNPIVSLFL
Homology
[Close]
BLAST of MS016719 vs. NCBI nr
Match: KGN58779.1 (hypothetical protein Csa_000887 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 1  LGLGFIARVYSFRSVGV---YGGANCGSARLGLSQNKY-GRCGYDFRHGPPSATAGSFGG 60
          +G+G I RV SFRSV     YG    GS+R+ + +NKY GRCGYDF  GP   TAGSFG 
Sbjct: 1  MGVGLITRVNSFRSVESCIGYGWVGVGSSRICICKNKYFGRCGYDFGDGPRPETAGSFGT 60

Query: 61 LIDGNPIVSLF 68
          LIDGN +VS F
Sbjct: 61 LIDGNSVVSFF 71

[Close]
BLAST of MS016719 vs. ExPASy TrEMBL
Match: A0A0A0LCV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731890 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 1  LGLGFIARVYSFRSVGV---YGGANCGSARLGLSQNKY-GRCGYDFRHGPPSATAGSFGG 60
          +G+G I RV SFRSV     YG    GS+R+ + +NKY GRCGYDF  GP   TAGSFG 
Sbjct: 1  MGVGLITRVNSFRSVESCIGYGWVGVGSSRICICKNKYFGRCGYDFGDGPRPETAGSFGT 60

Query: 61 LIDGNPIVSLF 68
          LIDGN +VS F
Sbjct: 61 LIDGNSVVSFF 71

The following BLAST results are available for this feature:
BLAST of MS016719 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58779.13.4e-1057.75hypothetical protein Csa_000887 [Cucumis sativus][more]
BLAST of MS016719 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS016719 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCV21.7e-1057.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731890 PE=4 SV=1[more]
BLAST of MS016719 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016719.1MS016719.1mRNA