MC06g_new0475.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0475.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Serine hydroxymethyltransferase
Location	MC06: 21360542 .. 21361077 (-)
Sequence length	342
RNA-Seq Expression	MC06g_new0475.1
Synteny	MC06g_new0475.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGTAAGTAGTGGTGAAGACGGAGTTGCTTCTGGGGAAAATCTGCAGGACTGGACAAAGTTGCAAGAGTGTTGATCTCGTCCTTTATAGTTTATTCCCATGCTGCAGGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGTTTGATTCCGTAGAACAATAGCTTGAGAGAGAAAATCTATACAAACCTGCCACTTGTTGCATTTGGTAAAACTTTTCTTGTTGTTCAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

mRNA sequence

ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

Coding sequence (CDS)

ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

Protein sequence

MPSLQLGEVKSERMTSVGVGGSVRAAVEGPIWLDIFEHMVVQRVLKLWKDSISNFQGTSELQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDSGASHPVEAFASMPTMLRLK

Homology

[Close]

BLAST of MC06g_new0475.1 vs. NCBI nr
Match: XP_022137046.1 (serine hydroxymethyltransferase 7-like [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 2.79e-05
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 53  SNFQGTSE-LQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDS-GASHPVEAFAS 105
           ++F+  +E L   AQITKIVI HREHG LHKDIM NLQ+N+D     + VEAFAS
Sbjct: 510 ADFETMAEILLKAAQITKIVI-HREHGRLHKDIMNNLQNNKDIVELRNRVEAFAS 563

[Close]

BLAST of MC06g_new0475.1 vs. NCBI nr
Match: XP_022980970.1 (serine hydroxymethyltransferase 7-like [Cucurbita maxima])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]

BLAST of MC06g_new0475.1 vs. NCBI nr
Match: KAG6608069.1 (Serine hydroxymethyltransferase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]

BLAST of MC06g_new0475.1 vs. NCBI nr
Match: KAG7031702.1 (Serine hydroxymethyltransferase 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]

BLAST of MC06g_new0475.1 vs. NCBI nr
Match: XP_022941000.1 (serine hydroxymethyltransferase 7-like [Cucurbita moschata])

HSP 1 Score: 50.4 bits (119), Expect = 2.46e-04
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKD+MKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDMMKNLQNNKDIMELRNRVEAFAA 570

[Close]

BLAST of MC06g_new0475.1 vs. ExPASy TrEMBL
Match: A0A6J1C598 (Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111008604 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.35e-05
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 53  SNFQGTSE-LQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDS-GASHPVEAFAS 105
           ++F+  +E L   AQITKIVI HREHG LHKDIM NLQ+N+D     + VEAFAS
Sbjct: 510 ADFETMAEILLKAAQITKIVI-HREHGRLHKDIMNNLQNNKDIVELRNRVEAFAS 563

[Close]

BLAST of MC06g_new0475.1 vs. ExPASy TrEMBL
Match: A0A6J1IY33 (Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480261 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]

BLAST of MC06g_new0475.1 vs. ExPASy TrEMBL
Match: A0A6J1FSB1 (Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446415 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.19e-04
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKD+MKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDMMKNLQNNKDIMELRNRVEAFAA 570

The following BLAST results are available for this feature:

BLAST of MC06g_new0475.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0475.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137046.1	2.79e-05	60.00	serine hydroxymethyltransferase 7-like [Momordica charantia]	[more]
XP_022980970.1	9.70e-05	54.55	serine hydroxymethyltransferase 7-like [Cucurbita maxima]	[more]
KAG6608069.1	9.70e-05	54.55	Serine hydroxymethyltransferase 6, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031702.1	9.70e-05	54.55	Serine hydroxymethyltransferase 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941000.1	2.46e-04	52.73	serine hydroxymethyltransferase 7-like [Cucurbita moschata]	[more]

BLAST of MC06g_new0475.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C598	1.35e-05	60.00	Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111008604 P...	[more]
A0A6J1IY33	4.70e-05	54.55	Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480261 PE=3...	[more]
A0A6J1FSB1	1.19e-04	52.73	Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446415 PE...	[more]

BLAST of MC06g_new0475.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC06g_new0475	MC06g_new0475	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC06g_new0475.1-cds	MC06g_new0475.1-cds-MC06:21360542..21360714	CDS
MC06g_new0475.1-cds	MC06g_new0475.1-cds-MC06:21360804..21360888	CDS
MC06g_new0475.1-cds	MC06g_new0475.1-cds-MC06:21360994..21361077	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC06g_new0475.1	MC06g_new0475.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006730	one-carbon metabolic process
biological_process	GO:1901564	organonitrogen compound metabolic process
molecular_function	GO:0016741	transferase activity, transferring one-carbon groups