MC06g_new0475 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0475
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSerine hydroxymethyltransferase
LocationMC06: 21360542 .. 21361077 (-)
RNA-Seq ExpressionMC06g_new0475
SyntenyMC06g_new0475
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGTAAGTAGTGGTGAAGACGGAGTTGCTTCTGGGGAAAATCTGCAGGACTGGACAAAGTTGCAAGAGTGTTGATCTCGTCCTTTATAGTTTATTCCCATGCTGCAGGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGTTTGATTCCGTAGAACAATAGCTTGAGAGAGAAAATCTATACAAACCTGCCACTTGTTGCATTTGGTAAAACTTTTCTTGTTGTTCAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

mRNA sequence

ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

Coding sequence (CDS)

ATGCCCTCGTTGCAGCTCGGGGAGGTGAAGTCGGAGAGGATGACTAGTGTTGGAGTTGGAGGATCTGTCAGAGCAGCCGTTGAAGGCCCAATTTGGCTCGATATCTTCGAGCACATGGTGGTTCAACGAGTACTCAAACTCTGGAAAGATTCAATCAGCAACTTTCAAGGCACTTCTGAACTGCAACCAGAGGCTCAGATCACAAAAATAGTCATTATTCATAGGGAACATGGAAATTTGCATAAAGATATTATGAAGAATCTACAAAGCAACCAAGACAGTGGAGCTTCGCACCCGGTCGAGGCGTTCGCTTCTATGCCTACGATGTTGAGATTGAAGTAA

Protein sequence

MPSLQLGEVKSERMTSVGVGGSVRAAVEGPIWLDIFEHMVVQRVLKLWKDSISNFQGTSELQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDSGASHPVEAFASMPTMLRLK
Homology
[Close]
BLAST of MC06g_new0475 vs. NCBI nr
Match: XP_022137046.1 (serine hydroxymethyltransferase 7-like [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 2.79e-05
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 53  SNFQGTSE-LQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDS-GASHPVEAFAS 105
           ++F+  +E L   AQITKIVI HREHG LHKDIM NLQ+N+D     + VEAFAS
Sbjct: 510 ADFETMAEILLKAAQITKIVI-HREHGRLHKDIMNNLQNNKDIVELRNRVEAFAS 563

[Close]
BLAST of MC06g_new0475 vs. NCBI nr
Match: XP_022980970.1 (serine hydroxymethyltransferase 7-like [Cucurbita maxima])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]
BLAST of MC06g_new0475 vs. NCBI nr
Match: KAG6608069.1 (Serine hydroxymethyltransferase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]
BLAST of MC06g_new0475 vs. NCBI nr
Match: KAG7031702.1 (Serine hydroxymethyltransferase 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 51.6 bits (122), Expect = 9.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]
BLAST of MC06g_new0475 vs. NCBI nr
Match: XP_022941000.1 (serine hydroxymethyltransferase 7-like [Cucurbita moschata])

HSP 1 Score: 50.4 bits (119), Expect = 2.46e-04
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKD+MKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDMMKNLQNNKDIMELRNRVEAFAA 570

[Close]
BLAST of MC06g_new0475 vs. ExPASy TrEMBL
Match: A0A6J1C598 (Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111008604 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.35e-05
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 53  SNFQGTSE-LQPEAQITKIVIIHREHGNLHKDIMKNLQSNQDS-GASHPVEAFAS 105
           ++F+  +E L   AQITKIVI HREHG LHKDIM NLQ+N+D     + VEAFAS
Sbjct: 510 ADFETMAEILLKAAQITKIVI-HREHGRLHKDIMNNLQNNKDIVELRNRVEAFAS 563

[Close]
BLAST of MC06g_new0475 vs. ExPASy TrEMBL
Match: A0A6J1IY33 (Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480261 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.70e-05
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKDIMKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDIMKNLQNNKDIMELRNRVEAFAA 570

[Close]
BLAST of MC06g_new0475 vs. ExPASy TrEMBL
Match: A0A6J1FSB1 (Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446415 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.19e-04
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 53  SNFQGTSELQPEA-QITKIVIIHREHGNLHKDIMKNLQSNQD-SGASHPVEAFAS 105
           ++F+  +E+  +A QITK+V+ HREHG LHKD+MKNLQ+N+D     + VEAFA+
Sbjct: 517 ADFETIAEILLKAVQITKMVL-HREHGKLHKDMMKNLQNNKDIMELRNRVEAFAA 570

The following BLAST results are available for this feature:
BLAST of MC06g_new0475 vs.
Match NameE-valueIdentityDescription
BLAST of MC06g_new0475 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137046.12.79e-0560.00serine hydroxymethyltransferase 7-like [Momordica charantia][more]
XP_022980970.19.70e-0554.55serine hydroxymethyltransferase 7-like [Cucurbita maxima][more]
KAG6608069.19.70e-0554.55Serine hydroxymethyltransferase 6, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031702.19.70e-0554.55Serine hydroxymethyltransferase 6 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022941000.12.46e-0452.73serine hydroxymethyltransferase 7-like [Cucurbita moschata][more]
BLAST of MC06g_new0475 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C5981.35e-0560.00Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111008604 P... [more]
A0A6J1IY334.70e-0554.55Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480261 PE=3... [more]
A0A6J1FSB11.19e-0452.73Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446415 PE... [more]
BLAST of MC06g_new0475 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0475.1MC06g_new0475.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006730 one-carbon metabolic process
biological_process GO:1901564 organonitrogen compound metabolic process
molecular_function GO:0016741 transferase activity, transferring one-carbon groups