Lsi03G001640.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVIS Homology
BLAST of Lsi03G001640.1 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 8.1e-35 Identity = 89/127 (70.08%), Postives = 98/127 (77.17%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17 Identity = 73/125 (58.40%), Postives = 78/125 (62.40%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. ExPASy TrEMBL
Match: A0A2N9EMQ7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12128 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. ExPASy TrEMBL
Match: A0A5B6ZTC9 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_016625 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12 Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10 Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34 Identity = 89/127 (70.08%), Postives = 98/127 (77.17%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23 Identity = 80/121 (66.12%), Postives = 86/121 (71.07%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23 Identity = 80/121 (66.12%), Postives = 85/121 (70.25%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima]) HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17 Identity = 73/125 (58.40%), Postives = 78/125 (62.40%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. NCBI nr
Match: KAG7986517.1 (hypothetical protein I3843_03G085300 [Carya illinoinensis]) HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09 Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0
BLAST of Lsi03G001640.1 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 9.2e-07 Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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