Lsi03G001640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription factor UPBEAT1-like
Location	chr03: 2227881 .. 2228264 (+)
RNA-Seq Expression	Lsi03G001640
Synteny	Lsi03G001640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG

mRNA sequence

ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG

Coding sequence (CDS)

ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAATCCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG

Protein sequence

MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVIS

Homology

[Close]

BLAST of Lsi03G001640 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.1e-35
Identity = 89/127 (70.08%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVS 60
           MSSKTN LPNPLRNY RRRTKRSLT SRRRFHRRH    R  + T G        CS+VS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLG--------CSEVS 60

Query: 61  AKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSD 120
            KL ALQSLIPPQ  S + H Q RQ D+LFK+TADYIV+LKT+VVILQKLVDFFGSACSD
Sbjct: 61  TKLEALQSLIPPQ--SAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSD 117

Query: 121 SENAVIS 128
           S +AV+S
Sbjct: 121 SPDAVVS 117

[Close]

BLAST of Lsi03G001640 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 73/125 (58.40%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--- 60
           M+ KT  L N     LR RTKRSL DS  R    H           G+TT SSPC S   
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPH---------EYGETTSSSPCSSSSD 60

Query: 61  -----DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVD 118
                DVSAKL ALQSLIP QS       +ARQT+QLFKETADYIVLLKT+VVILQKLVD
Sbjct: 61  DDDDDDVSAKLEALQSLIPAQSA------EARQTEQLFKETADYIVLLKTQVVILQKLVD 105

[Close]

BLAST of Lsi03G001640 vs. ExPASy TrEMBL
Match: A0A2N9EMQ7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12128 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 3   SKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSA 62
           S T   P    +  RRR  R    SRRR   R C A R+ NNGT G  T     CS+VS 
Sbjct: 2   SSTPVKPRAFLSRSRRRLTRK-PRSRRRLQARPCRARRNFNNGTVGVRT-----CSNVSD 61

Query: 63  KLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDS 122
           KL AL++LIP      + +D+  + DQLFKETADYIVLL+T+VVILQ+LV+ +GS+ + S
Sbjct: 62  KLEALKNLIP------AYNDEIVKPDQLFKETADYIVLLRTQVVILQRLVELYGSSTTGS 114

Query: 123 ENAVI 127
           +N V+
Sbjct: 122 DNVVL 114

[Close]

BLAST of Lsi03G001640 vs. ExPASy TrEMBL
Match: A0A5B6ZTC9 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_016625 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 13  RNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPP 72
           ++ + R  +R     R+RFHR    +    NG RG    SSP CS VS KL AL++LIP 
Sbjct: 6   KSSVSRPMRRRPNSQRQRFHRAQKVSRTVVNG-RGRRICSSPACSSVSDKLEALKNLIP- 65

Query: 73  QSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVIS 128
                 AH    + DQLF+ETADYIVLL+TRV+ILQ+L+DF+GS  S+ +NA+ S
Sbjct: 66  ------AHSGEIKADQLFQETADYIVLLRTRVLILQRLIDFYGS--SEDQNALQS 110

[Close]

BLAST of Lsi03G001640 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 13  RNYLRRRTKRSL---TDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSAKLAALQS 72
           R  L RRT+R L   T +RRR   R C A RS NNG R         C+ VS KL AL++
Sbjct: 8   RKALLRRTRRKLTRRTSTRRRLQARPCRARRSFNNGGR--------TCAKVSDKLEALKN 67

Query: 73  LIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSA 118
           LIP  +  T       + DQLFKETA+YIVLL+T+VVILQ+LV+F+GS+
Sbjct: 68  LIPAHNGETV------KPDQLFKETAEYIVLLRTQVVILQRLVEFYGSS 102

[Close]

BLAST of Lsi03G001640 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 89/127 (70.08%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVS 60
           MSSKTN LPNPLRNY RRRTKRSLT SRRRFHRRH    R  + T G        CS+VS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLG--------CSEVS 60

Query: 61  AKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSD 120
            KL ALQSLIPPQ  S + H Q RQ D+LFK+TADYIV+LKT+VVILQKLVDFFGSACSD
Sbjct: 61  TKLEALQSLIPPQ--SAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSD 117

Query: 121 SENAVIS 128
           S +AV+S
Sbjct: 121 SPDAVVS 117

[Close]

BLAST of Lsi03G001640 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 80/121 (66.12%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC--- 60
           MS KTN L N     LR  TKRSL DSRRRFHRRH  A+R+ N    G+TT SSP     
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDD 60

Query: 61  SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGS 118
            DVSAKL ALQSLIP QS       + RQT+QLFKETADYIVLLKT+VVILQKLVDFFGS
Sbjct: 61  DDVSAKLEALQSLIPAQSA------EGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS 110

[Close]

BLAST of Lsi03G001640 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 80/121 (66.12%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC--- 60
           MS KTN L N     LR  TKRSL DSRRRFHRRH  A+R+ N    G TT SSP     
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGQTTSSSPFSDDD 60

Query: 61  SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGS 118
            DVSAKL ALQSLIP QS       + RQT+QLFKETADYIVLLKT+VVILQKLVDFFGS
Sbjct: 61  DDVSAKLEALQSLIPAQSA------EGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS 110

[Close]

BLAST of Lsi03G001640 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 73/125 (58.40%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 1   MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--- 60
           M+ KT  L N     LR RTKRSL DS  R    H           G+TT SSPC S   
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPH---------EYGETTSSSPCSSSSD 60

Query: 61  -----DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVD 118
                DVSAKL ALQSLIP QS       +ARQT+QLFKETADYIVLLKT+VVILQKLVD
Sbjct: 61  DDDDDDVSAKLEALQSLIPAQSA------EARQTEQLFKETADYIVLLKTQVVILQKLVD 105

[Close]

BLAST of Lsi03G001640 vs. NCBI nr
Match: KAG7986517.1 (hypothetical protein I3843_03G085300 [Carya illinoinensis])

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 13  RNYLRRRTKRSL--TDSRRRFHRRHCPALRS--NNGTRGDTTHSSPCCSDVSAKLAALQS 72
           + +LRR  +R +  T SRRR H R C   RS  NNG R         CS+VS KL AL++
Sbjct: 11  KTFLRRTRRRQIGRTSSRRRLHARSCRDRRSCFNNGGR--------TCSEVSGKLEALKN 70

Query: 73  LIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVI 127
           LIP          +  + DQLF+ETA+YI+LL+TRVV+LQ+L++F+GS  S  EN V+
Sbjct: 71  LIPAGGNGA----EIIKPDQLFQETAEYIILLRTRVVMLQRLLEFYGS--SGRENVVL 114

[Close]

BLAST of Lsi03G001640 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 60  SAKLAALQSLIPPQSTSTSAHDQ---------ARQTDQLFKETADYIVLLKTRVVILQKL 119
           S KL AL+SL+PP S  T    Q           +T+QLF+ETADYIV L+ +VV+LQKL
Sbjct: 31  SEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVGETEQLFQETADYIVRLRGQVVVLQKL 90

Query: 120 VDFFGSACSDSENAV 126
           ++ +GS+    +N V
Sbjct: 91  IEIYGSSDQKEDNFV 105

[Close]

BLAST of Lsi03G001640 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-07
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 40  RSNNGTRGDTTHSSPCCSD--------VSAKLAALQSLIPPQSTSTSAHDQARQTDQLFK 99
           R+N  +R    H+  CC +        V  KL AL+SL+PP       +    +T++LF+
Sbjct: 14  RANVSSRTRVLHT--CCGNGSSDGGKTVMEKLLALKSLLPP-----PVNVGGGETEELFQ 73

Query: 100 ETADYIVLLKTRVVILQKLVDFFGSACSDSENAVI 127
           ETA+YIV L+T+VV+L+KL++ + ++    ++ V+
Sbjct: 74  ETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVVL 101

The following BLAST results are available for this feature:

BLAST of Lsi03G001640 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G001640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNP5	8.1e-35	70.08	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1JTK8	2.0e-17	58.40	uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609...	[more]
A0A2N9EMQ7	1.9e-12	48.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12128 PE=4 SV=1	[more]
A0A5B6ZTC9	7.3e-12	47.83	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_016625 PE=4 SV=1	[more]
A0A5N6QW57	5.3e-10	50.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1	[more]

BLAST of Lsi03G001640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039441.1	1.7e-34	70.08	transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcr...	[more]
KAG7016112.1	2.3e-23	66.12	hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578552.1	3.8e-23	66.12	hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993697.1	4.1e-17	58.40	uncharacterized protein LOC111489609 [Cucurbita maxima]	[more]
KAG7986517.1	3.7e-10	45.76	hypothetical protein I3843_03G085300 [Carya illinoinensis]	[more]

BLAST of Lsi03G001640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39240.1	4.4e-09	45.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G29370.1	9.2e-07	33.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 17..124
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 17..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001640.1	Lsi03G001640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated