Lsi02G008090.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI Homology
BLAST of Lsi02G008090.1 vs. ExPASy TrEMBL
Match: A0A5A7UMG1 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002290 PE=4 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80 Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. ExPASy TrEMBL
Match: A0A1S3B8G2 (uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=4 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80 Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. ExPASy TrEMBL
Match: A0A0A0M094 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79 Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. ExPASy TrEMBL
Match: A0A6J1KLR7 (rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111495719 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 5.0e-70 Identity = 151/202 (74.75%), Postives = 161/202 (79.70%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. ExPASy TrEMBL
Match: A0A6P5WYR0 (ELMO domain-containing protein F-like OS=Durio zibethinus OX=66656 GN=LOC111278682 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 6.8e-59 Identity = 128/190 (67.37%), Postives = 147/190 (77.37%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. NCBI nr
Match: XP_038894960.1 (uncharacterized protein LOC120083324 [Benincasa hispida]) HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81 Identity = 167/188 (88.83%), Postives = 173/188 (92.02%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. NCBI nr
Match: XP_008443296.1 (PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo] >KAA0057042.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80 Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. NCBI nr
Match: KGN65978.2 (hypothetical protein Csa_019723 [Cucumis sativus]) HSP 1 Score: 304.7 bits (779), Expect = 5.5e-79 Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. NCBI nr
Match: XP_004150211.1 (uncharacterized protein LOC101205379 [Cucumis sativus]) HSP 1 Score: 304.7 bits (779), Expect = 5.5e-79 Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. NCBI nr
Match: KAG6583958.1 (hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72 Identity = 152/200 (76.00%), Postives = 165/200 (82.50%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 175.6 bits (444), Expect = 3.6e-44 Identity = 102/189 (53.97%), Postives = 127/189 (67.20%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 121.3 bits (303), Expect = 8.0e-28 Identity = 80/185 (43.24%), Postives = 108/185 (58.38%), Query Frame = 0
BLAST of Lsi02G008090.1 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 117.9 bits (294), Expect = 8.9e-27 Identity = 73/188 (38.83%), Postives = 110/188 (58.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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