Lsi02G008090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G008090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF4228 domain-containing protein
Location	chr02: 7524234 .. 7524788 (-)
RNA-Seq Expression	Lsi02G008090
Synteny	Lsi02G008090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA

mRNA sequence

ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA

Coding sequence (CDS)

ATGAAAAATAGCATAAGATGCTGCATATCTTGCATTCTTCCCTGTGGAGCTTTGGATGTGATTCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGTTCCATCAAAGCTTCCGACGTCATGAAAGCCCATCCCAAACACGTCCTCAAAAAGCCTTCCTCCGCCCACGACGCCGCCTCCTCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCTACTCCTCCCAATCCCGACAAACCCCGCCGTAGAAAGAAGAGAGAATTTTCCAATAACAATAATCAAAATCATTCCCACCGATCAACCACCGTCGCTACCGCCGCCGCCGCCGTACCCGACAACAACAACAACAACAACATTTCCATGACTAATCTCCTCGTTTCCGACCACTACCTCTCCGAAATACTCTCCGACAAAGCCTCCACACACCGCGAACGGCGGCGCGGCCGTGTCGGCGTTTGGAGACCCCACTTACAAAGCATTTGTGAATCCCCCAGTGATATCTAA

Protein sequence

MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

Homology

[Close]

BLAST of Lsi02G008090 vs. ExPASy TrEMBL
Match: A0A5A7UMG1 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002290 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  --AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHS 120
             AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE SNN+     
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREHSNNH----- 120

Query: 121 HRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180
           HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH
Sbjct: 121 HRTITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180

Query: 181 LQSICESPSDI 185
           LQSICESPSDI
Sbjct: 181 LQSICESPSDI 183

[Close]

BLAST of Lsi02G008090 vs. ExPASy TrEMBL
Match: A0A1S3B8G2 (uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  --AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHS 120
             AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE SNN+     
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREHSNNH----- 120

Query: 121 HRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180
           HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH
Sbjct: 121 HRTITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180

Query: 181 LQSICESPSDI 185
           LQSICESPSDI
Sbjct: 181 LQSICESPSDI 183

[Close]

BLAST of Lsi02G008090 vs. ExPASy TrEMBL
Match: A0A0A0M094 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  -AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSH 120
            AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE+SNN+     H
Sbjct: 61  AAHDAASALPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREYSNNH-----H 120

Query: 121 RSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 180
           R+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ
Sbjct: 121 RTTTAASTASAVPD-TTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 180

Query: 181 SICESPSDI 185
           SICESPSDI
Sbjct: 181 SICESPSDI 180

[Close]

BLAST of Lsi02G008090 vs. ExPASy TrEMBL
Match: A0A6J1KLR7 (rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111495719 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.0e-70
Identity = 151/202 (74.75%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  --AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPR-----RRKKREFSNNN 120
               D AS+LPKIVIVPPEADLQRGKIYFLMPL   PPNPDKPR     RRKKR  +NNN
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPL---PPNPDKPRSRSSSRRKKRVTNNNN 120

Query: 121 NQNHSHRSTTVATAAAAVPD-------NNNNNNISMTNLLVSDHYLSEILSDKASTHRER 180
             NH    T  A  A+A  D       NNNN++ISM+NL VSD YLSEILS+KASTHRER
Sbjct: 121 KNNHHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRER 180

Query: 181 RRGRVGVWRPHLQSICESPSDI 185
           RRGRVGVWRPHL+SICESPS +
Sbjct: 181 RRGRVGVWRPHLESICESPSHV 199

[Close]

BLAST of Lsi02G008090 vs. ExPASy TrEMBL
Match: A0A6P5WYR0 (ELMO domain-containing protein F-like OS=Durio zibethinus OX=66656 GN=LOC111278682 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.8e-59
Identity = 128/190 (67.37%), Postives = 147/190 (77.37%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDA 60
           MKN+IRCCISCILPCGALDVIRI+HSNG VEEISGSIKAS++MKAHPKHVLKKPSS  D 
Sbjct: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGSIKASEIMKAHPKHVLKKPSSPSD- 60

Query: 61  ASSLPKIVIVPPEADLQRGKIYFLMPLPPTP-------PNPDKPRRRKKREFSNNNNQNH 120
              +PKIVIVPP+A+LQRGKIYFLMP+P TP        +  K +RR   + SNNNN N 
Sbjct: 61  DGMVPKIVIVPPDAELQRGKIYFLMPVPSTPEKNRSKSSSTTKKKRRDSLDSSNNNNSNS 120

Query: 121 SHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180
             +S + A        N NNN ISMTNLL+SD YLSEILS+K ST R+RRRGRVGVWRPH
Sbjct: 121 HSQSMSNA--------NKNNNTISMTNLLISDQYLSEILSEKLSTQRDRRRGRVGVWRPH 180

Query: 181 LQSICESPSD 184
           L+SI E+P+D
Sbjct: 181 LESISETPND 181

[Close]

BLAST of Lsi02G008090 vs. NCBI nr
Match: XP_038894960.1 (uncharacterized protein LOC120083324 [Benincasa hispida])

HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81
Identity = 167/188 (88.83%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCG LDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGVLDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSA 60

Query: 61  AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSHR 120
           AHDAA++ PKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKR+ SNNN  +HSHR
Sbjct: 61  AHDAATA-PKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKRD-SNNNINHHSHR 120

Query: 121 STTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQS 180
           +T  A  +AAVP  NNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQS
Sbjct: 121 TT--AAVSAAVP--NNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQS 180

Query: 181 ICESPSDI 185
           ICESPSDI
Sbjct: 181 ICESPSDI 182

[Close]

BLAST of Lsi02G008090 vs. NCBI nr
Match: XP_008443296.1 (PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo] >KAA0057042.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 164/191 (85.86%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  --AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHS 120
             AHDAASSLPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE SNN+     
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREHSNNH----- 120

Query: 121 HRSTTVATAAAAVPD-NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180
           HR+ T A+ A+AVPD   NNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH
Sbjct: 121 HRTITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPH 180

Query: 181 LQSICESPSDI 185
           LQSICESPSDI
Sbjct: 181 LQSICESPSDI 183

[Close]

BLAST of Lsi02G008090 vs. NCBI nr
Match: KGN65978.2 (hypothetical protein Csa_019723 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 5.5e-79
Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 3   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 62

Query: 61  -AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSH 120
            AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE+SNN+     H
Sbjct: 63  AAHDAASALPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREYSNNH-----H 122

Query: 121 RSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 180
           R+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ
Sbjct: 123 RTTTAASTASAVPD-TTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 182

Query: 181 SICESPSDI 185
           SICESPSDI
Sbjct: 183 SICESPSDI 182

[Close]

BLAST of Lsi02G008090 vs. NCBI nr
Match: XP_004150211.1 (uncharacterized protein LOC101205379 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 5.5e-79
Identity = 161/189 (85.19%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  -AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSH 120
            AHDAAS+LPKIVIVPPEADLQRGKIYFLMPL   PP+PDKPRRRKKRE+SNN+     H
Sbjct: 61  AAHDAASALPKIVIVPPEADLQRGKIYFLMPL---PPDPDKPRRRKKREYSNNH-----H 120

Query: 121 RSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 180
           R+TT A+ A+AVPD    N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ
Sbjct: 121 RTTTAASTASAVPD-TTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQ 180

Query: 181 SICESPSDI 185
           SICESPSDI
Sbjct: 181 SICESPSDI 180

[Close]

BLAST of Lsi02G008090 vs. NCBI nr
Match: KAG6583958.1 (hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 152/200 (76.00%), Postives = 165/200 (82.50%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS---- 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  --AHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPR----RRKKREFSNNNN 120
               D AS+LPKIVIVPPEADLQRGKIYFLMPL   PPNPDKPR     R+K+  +NNNN
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPL---PPNPDKPRSRSSSRRKKRVTNNNN 120

Query: 121 QNHSHRSTTVATAAAAVPD------NNNNNNISMTNLLVSDHYLSEILSDKASTHRERRR 180
           +N+ H   T   AA+A  D      NNNNN+ISM+NLLVSD YLSEILS+KASTHRERRR
Sbjct: 121 KNNHHSDRTPPAAASATADSDDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRR 180

Query: 181 GRVGVWRPHLQSICESPSDI 185
           GRVGVWRPHL+SICESPSD+
Sbjct: 181 GRVGVWRPHLESICESPSDV 197

[Close]

BLAST of Lsi02G008090 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-44
Identity = 102/189 (53.97%), Postives = 127/189 (67.20%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSA--- 60
           MK +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSS    
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  HDAAS--SLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSN-----NNN 120
           HD     S  KIVIVPPEA+LQRGKIYFLMP   +       + R+++  +N      + 
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRSQ 120

Query: 121 QNHSHRSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVW 180
               HR            ++  + N     L+ SD YL+EILS+K +T ++RR+GRVGVW
Sbjct: 121 YRRQHRDGD-EKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVW 180

[Close]

BLAST of Lsi02G008090 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-28
Identity = 80/185 (43.24%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDA 60
           M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCS---- 60

Query: 61  ASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRKKREFSNNNNQNHSHRSTTV 120
              + KI+I+ PE++L+RG IYFL+   P    P+K RRRK       N QN S      
Sbjct: 61  QGVVRKILILSPESELKRGSIYFLI---PDSSLPEKKRRRKDTPRRKKNLQNPS------ 120

Query: 121 ATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKAS--THRERRR----GRVGVWRPHL 180
             A AA  +   +       + + + YL E++S  ++   HR RRR      V  WRP L
Sbjct: 121 --ADAAGREIKGDEEC----VKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLL 166

[Close]

BLAST of Lsi02G008090 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-27
Identity = 73/188 (38.83%), Postives = 110/188 (58.51%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSAHDA 60
           M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCS---- 60

Query: 61  ASSLPKIVIVPPEADLQRGKIYFLMPLPPTPPNPDKPRRRK-----KREFSNNNNQNHSH 120
              + KI+I+ PE++L+RG IYFL+P   + P   K ++RK     K+   + N+ N  H
Sbjct: 61  QGVVRKILILSPESELKRGSIYFLIP-DTSMPEKKKTKKRKELRCRKKPLESGNDINSDH 120

Query: 121 RSTTVATAAAAVPDNNNNNNISMTNLLVSDHYLSEILSDKASTHRERRR----GRVGVWR 180
            ST           + + + +++    + D  LSE +S     +R RR+      V  WR
Sbjct: 121 VSTN---------KDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWR 174

The following BLAST results are available for this feature:

BLAST of Lsi02G008090 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G008090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMG1	3.1e-80	85.86	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B8G2	3.1e-80	85.86	uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=...	[more]
A0A0A0M094	2.7e-79	85.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1	[more]
A0A6J1KLR7	5.0e-70	74.75	rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6P5WYR0	6.8e-59	67.37	ELMO domain-containing protein F-like OS=Durio zibethinus OX=66656 GN=LOC1112786...	[more]

BLAST of Lsi02G008090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894960.1	2.0e-81	88.83	uncharacterized protein LOC120083324 [Benincasa hispida]	[more]
XP_008443296.1	6.5e-80	85.86	PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo] >KAA0057042.1 DUF...	[more]
KGN65978.2	5.5e-79	85.19	hypothetical protein Csa_019723 [Cucumis sativus]	[more]
XP_004150211.1	5.5e-79	85.19	uncharacterized protein LOC101205379 [Cucumis sativus]	[more]
KAG6583958.1	1.7e-72	76.00	hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G008090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29195.1	3.6e-44	53.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06980.1	8.0e-28	43.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	8.9e-27	38.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 6..179 e-value: 6.0E-34 score: 118.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..120
None	No IPR available	PANTHER	PTHR33052:SF3	OS01G0758500 PROTEIN	coord: 1..182
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G008090.1	Lsi02G008090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding