Lsi02G005940.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA MQRTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPLQTTSTTIS Homology
BLAST of Lsi02G005940.1 vs. ExPASy TrEMBL
Match: A0A5D3DML5 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003250 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19 Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. ExPASy TrEMBL
Match: A0A1S3C8I1 (uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19 Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. ExPASy TrEMBL
Match: A0A6J1DS59 (uncharacterized protein LOC111023023 OS=Momordica charantia OX=3673 GN=LOC111023023 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14 Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. ExPASy TrEMBL
Match: A0A6J1D9W8 (uncharacterized protein LOC111018555 OS=Momordica charantia OX=3673 GN=LOC111018555 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. ExPASy TrEMBL
Match: A0A5D3DM96 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003260 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12 Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. NCBI nr
Match: XP_008458669.1 (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo] >TYK24762.1 uncharacterized protein E5676_scaffold266G003250 [Cucumis melo var. makuwa]) HSP 1 Score: 103.6 bits (257), Expect = 7.0e-19 Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. NCBI nr
Match: XP_022156054.1 (uncharacterized protein LOC111023023 [Momordica charantia]) HSP 1 Score: 87.0 bits (214), Expect = 6.7e-14 Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. NCBI nr
Match: XP_022150379.1 (uncharacterized protein LOC111018555 [Momordica charantia]) HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. NCBI nr
Match: XP_008458670.1 (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo] >TYK24763.1 uncharacterized protein E5676_scaffold266G003260 [Cucumis melo var. makuwa]) HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11 Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 0
BLAST of Lsi02G005940.1 vs. NCBI nr
Match: XP_022967680.1 (uncharacterized protein LOC111467133 [Cucurbita maxima]) HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11 Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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