Lsi02G005940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAgglutinin domain-containing protein
Locationchr02: 5285924 .. 5286133 (+)
RNA-Seq ExpressionLsi02G005940
SyntenyLsi02G005940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA

mRNA sequence

ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA

Coding sequence (CDS)

ATGCAAAGAACTGCTGTAAAAGTGGGTGTCATAGCAACAAAAGGATATTGTGAGGTTCCATTTTCATATACTCAACGTGATGTTCTTGTGGATGGACAGACTAGAATTACACAGCATGATGATGGTTTATACACTGGTGTTAATTGCTATAACTTTTACTATCAAGCTAAAGATGTACCTTTACAGACTACATCAACTACCATTTCTTAA

Protein sequence

MQRTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPLQTTSTTIS
Homology
BLAST of Lsi02G005940 vs. ExPASy TrEMBL
Match: A0A5D3DML5 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003250 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 3   RTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDV 60
           RT+VKV  + TKGYC+VPFSYTQRD+LVDGQTR T+HDDGL+TG NCYNF+YQ++DV
Sbjct: 403 RTSVKVSAMLTKGYCDVPFSYTQRDILVDGQTRTTEHDDGLFTGFNCYNFHYQSEDV 459

BLAST of Lsi02G005940 vs. ExPASy TrEMBL
Match: A0A1S3C8I1 (uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 3   RTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDV 60
           RT+VKV  + TKGYC+VPFSYTQRD+LVDGQTR T+HDDGL+TG NCYNF+YQ++DV
Sbjct: 403 RTSVKVSAMLTKGYCDVPFSYTQRDILVDGQTRTTEHDDGLFTGFNCYNFHYQSEDV 459

BLAST of Lsi02G005940 vs. ExPASy TrEMBL
Match: A0A6J1DS59 (uncharacterized protein LOC111023023 OS=Momordica charantia OX=3673 GN=LOC111023023 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 4   TAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPL 62
           T + V ++AT+GYC+VPFSY QRDVL++G+T I  ++DGLYTG NCYNF Y+AKD PL
Sbjct: 410 TKMTVSLLATQGYCDVPFSYYQRDVLMNGETVIELYEDGLYTGANCYNFKYEAKDEPL 467

BLAST of Lsi02G005940 vs. ExPASy TrEMBL
Match: A0A6J1D9W8 (uncharacterized protein LOC111018555 OS=Momordica charantia OX=3673 GN=LOC111018555 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 4   TAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPL 62
           + V V ++ATKG C+VP+SYTQ D L++G+T+I + DDG+YTG+NCYNF Y+ K  PL
Sbjct: 409 STVIVSLLATKGTCDVPYSYTQCDTLINGETKIYEMDDGVYTGINCYNFKYEVKSKPL 466

BLAST of Lsi02G005940 vs. ExPASy TrEMBL
Match: A0A5D3DM96 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   RTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKD 59
           +T VKV +IA+KG C++PFSY QRDV  DG  +I +HDDG+YTG+NCY++ Y+ ++
Sbjct: 402 KTRVKVSLIASKGKCDIPFSYMQRDVYSDGTVKIEEHDDGIYTGLNCYSYNYEVEE 457

BLAST of Lsi02G005940 vs. NCBI nr
Match: XP_008458669.1 (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo] >TYK24762.1 uncharacterized protein E5676_scaffold266G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 7.0e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 3   RTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDV 60
           RT+VKV  + TKGYC+VPFSYTQRD+LVDGQTR T+HDDGL+TG NCYNF+YQ++DV
Sbjct: 403 RTSVKVSAMLTKGYCDVPFSYTQRDILVDGQTRTTEHDDGLFTGFNCYNFHYQSEDV 459

BLAST of Lsi02G005940 vs. NCBI nr
Match: XP_022156054.1 (uncharacterized protein LOC111023023 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 6.7e-14
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 4   TAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPL 62
           T + V ++AT+GYC+VPFSY QRDVL++G+T I  ++DGLYTG NCYNF Y+AKD PL
Sbjct: 410 TKMTVSLLATQGYCDVPFSYYQRDVLMNGETVIELYEDGLYTGANCYNFKYEAKDEPL 467

BLAST of Lsi02G005940 vs. NCBI nr
Match: XP_022150379.1 (uncharacterized protein LOC111018555 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 4   TAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPL 62
           + V V ++ATKG C+VP+SYTQ D L++G+T+I + DDG+YTG+NCYNF Y+ K  PL
Sbjct: 409 STVIVSLLATKGTCDVPYSYTQCDTLINGETKIYEMDDGVYTGINCYNFKYEVKSKPL 466

BLAST of Lsi02G005940 vs. NCBI nr
Match: XP_008458670.1 (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo] >TYK24763.1 uncharacterized protein E5676_scaffold266G003260 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   RTAVKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKD 59
           +T VKV +IA+KG C++PFSY QRDV  DG  +I +HDDG+YTG+NCY++ Y+ ++
Sbjct: 402 KTRVKVSLIASKGKCDIPFSYMQRDVYSDGTVKIEEHDDGIYTGLNCYSYNYEVEE 457

BLAST of Lsi02G005940 vs. NCBI nr
Match: XP_022967680.1 (uncharacterized protein LOC111467133 [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 6   VKVGVIATKGYCEVPFSYTQRDVLVDGQTRITQHDDGLYTGVNCYNFYYQAKDVPL 62
           V+V ++ATKG+C+VP+SYTQRD L++G      +DDG+YT VNCYNF Y+ K  PL
Sbjct: 409 VRVSLLATKGHCDVPYSYTQRDTLMNGDQVTNYYDDGIYTAVNCYNFKYETKQEPL 464

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DML53.4e-1975.44Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3C8I13.4e-1975.44uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=... [more]
A0A6J1DS593.3e-1463.79uncharacterized protein LOC111023023 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1D9W81.8e-1256.90uncharacterized protein LOC111018555 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5D3DM965.2e-1255.36Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
XP_008458669.17.0e-1975.44PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo] >TYK24762.1 uncha... [more]
XP_022156054.16.7e-1463.79uncharacterized protein LOC111023023 [Momordica charantia][more]
XP_022150379.13.7e-1256.90uncharacterized protein LOC111018555 [Momordica charantia][more]
XP_008458670.11.1e-1155.36PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo] >TYK24763.1 uncha... [more]
XP_022967680.11.4e-1157.14uncharacterized protein LOC111467133 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.170.15.10Proaerolysin, chain A, domain 3coord: 2..61
e-value: 1.7E-10
score: 42.8
NoneNo IPR availablePANTHERPTHR39244NATTERIN-4coord: 3..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005940.1Lsi02G005940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region