Lcy08g014020.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy08g014020.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 44206311 .. 44209719 (-)
Sequence length600
RNA-Seq ExpressionLcy08g014020.1
SyntenyLcy08g014020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGTAGATTCTAAAATCGTTTGGAATCTACTTCACGACCATGACCAACATTTCAATGAGATTGCTACCCTTTATTGACCATTCAAGCAATTATTCCATGCTCATCATATTAGGGGGTTCTCTCTTACTCCTAGAGATGAGAATAAAGTTGTTCATATGTTAGCTACTCACGCTCGCACATCGAAACACTCGAAAGTTTGGCTAGAAGAATGTTCCCTTTTGGGTTCCCATCATCTTAATTCAAGAGATGCCTCAAACTGATGTTTTTTCTTCTTTTCATGTTTAGCTTTTTTGTTTTTGTACTCTTCAAAAAAAAAAAAAAATCAAGGCTATTTGTCCTCCCTTTCAAGGAACAAAAAAGCTTCTTTAAACTACATTAAATTGAAAGTTCAAGGTTTTGTAAGGTTGGAAAGAAAAGATGTTTTCCATGGTCAGGAAAAAGGTACTCATAAAAGCAGTGGCATAGGCAATACCCACTTACACCCTCACATGTTTTAAGTAACCACATGGATACTATCACGATTTGAACAAGATAATGGCTAATTTTTCGTAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGAGTTTTAGAGATATAGGGCTCTTCAATCAGGCATTAATGACAAACACACATATGGAAAGAATTACATAGATCACAATCTCTATTGGCCCATATCTTAAAAACCAAATATTACCCTTAAGATGATTTTCTCAAGACAAAATTGGGAGGCAGACTATCCTATGTCTGGAGGGAGACGAGAGCTAGCCATGAAGGGGGAAGGTGGAGAATAGGAAATGGTGAATCAATCAACATTTATGAAGACCAGTGGGTTCCGAGGCCAAAAAACTTTAGACTGTTTACACCTTAACAACTGTTGACTGATCGCATAGTAAAAAGCTTTCTTCAAGTAGTCAAACTTGGAACAATCGTTTGCTAACATACCTTTTTGTGTAGGAGGATGTAGAAAAAGTCCAGGATATCCCAATTCTTCTAGCACTATGACAAAACAAGGAAATAAATAATCCAGAGCAGCTACAACTTACAAATTGTGAGGTCTCCACTAATGGTGCCCCCTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCAATTTTTTTTTCTTTGGACCGAATACCCGTTTGGGTTTAATGGGCTCTGATACCATATTATAACATGGGCTTCCATCTGAAAACCAATTGGCAATGAGTGAAGTGACCCTTGTAGCTTATAAATTGTGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACAAAGCCAACCCTATCGATTGGGCATCAAACTTCATAGCATAATTTATGGAGGCCTAAACAAAGTGAAATGAAGGCTAGGAGAGTTCGGGATGTGCTGGCAATTCCTGTCCCACTTGCTAGACACCACCACCCCATAACCATTTCAAGCTGAACGACATGAATGCAGCGGTAACAAATAGGGAAATGGGTTTTGGCATGATCATCCGCAATTCCAAATGCGAAACGATGAGAACTACAAAAAATATTAGGAGAATGAGTTGCTTAGTGGAGTGGGTAGAATCACAAACACTGGTAGATGATGTTCAATTAGCATGGGAAGGCATATCCCCAATTATTGGATAGATACAAATGATTTTACCCAAATCGTTTATGTATAGATATGCGAGTGAAAATATAATATACAATGAGTTTGTATTTGATACAACATATTTTACTTCTTTATAAATCAATTAATTGAGAAGATAAATATTTTACAAGAGAAAAAGGAGTCTATGTCATCAAAGCCACCAAACTTGTTTACTGCCACATCAACATTTCGTTAAATCAACTAACGATCAAATGATCTTGATACCATTTACAGATATGAAGGACTAAAAACACCAATATTTTGAAACCTAAAGACCAAATAGATGTCAAATATAAACATTAAAAGTGTATTTTGTCCTAATATATATTGGGTTAAAAATCACTTTTGGAATTTTCATATTAAAGTAACAGTTTAGTCCATGATCTTTGATTTGTAACGATTTAGTCTCTATACTTTCAATTTTGTAACAATTTAGTCCCTGATCATATGTAACAACTTAGTCCATGTACTTTAAAACTTGTAACGATATAGTCCTTATCGAGAAAATTAATATTAAGATTTAATGAAATTTCTTACATAGATAGATTAATAAACTAATTTGGGATCCATTATGTTTTTTTTTTTTTTTTTTCGACTCAATGGGACCCAATATGTTTATAAGCTACTAAGTCGTTAAATAATAAAAATCTACATTTAATTCTGATCAAATTTTTTGCTACTAGGATTAAATTGTTACAAATTTGAAAGTATAAAGACCAAAATGTTACTTATTAAAATTCAAGGACGAAATCGTTACTTTCATAAAAGTTCAGGGACTAGAAATGACTTTTAACCTATATTATTGTGTGTGGGTTGAATCAATCAATTTCATGGACCTAAGAATCGAACCAATCTGATCAATTTTTTTTAAGAAAAAGGTGAGAAAACCCAATCTAATTCAAATAATCAAATCAATTTTCAGCCTTTTTTTAGTTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGTAAGTCCGAGATTCTAATTTTTGATATGTTCAGTTCGTTTTCAGTTCCTTACCCAGTCTCTTTCTTGATTTTTTTGATCTGAGTCATGTTATCAAATGCTTTATGAAGTAAATCTGGCAGCATGGCAATTGTTTTTTGTTTAATTCGTCAACAGGGTTGAAGTTTGAGATTGCTGTGAAGTGAGTTTGATATGGAATTTTGAAGAGTTAAATCTCGAATTTTGTTGAACTGGCCGGCTTTAATGAAGGAGACGATATGAAATACTTTTTTATCTGTAGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

mRNA sequence

ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGATTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

Coding sequence (CDS)

ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGATTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

Protein sequence

MDVAITNGEMSSGTIIRNSKGESMVTAEVFRTMCSSVEWTETQALINGATLVVEFGLTPVWAEGSLEQGKKFIGSNERFDEKAKGQGMDDSTIFGMDLILASAFSHPLSYTIVLSSPPSATASVNHSSVQPSAVRRPLCPKLNRLFILSSVKPVWRTDTVFVNSAKKPSSRHLLLHSSLGFSSPHLLGAVFSISLERYD
Homology
The following BLAST results are available for this feature:
BLAST of Lcy08g014020.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014020.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014020.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014020.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 10..76
e-value: 9.8E-6
score: 25.4

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy08g014020Lcy08g014020gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy08g014020.1.exon4Lcy08g014020.1.exon4exon
Lcy08g014020.1.exon3Lcy08g014020.1.exon3exon
Lcy08g014020.1.exon2Lcy08g014020.1.exon2exon
Lcy08g014020.1.exon1Lcy08g014020.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy08g014020.1.cds4Lcy08g014020.1.cds4CDS
Lcy08g014020.1.cds3Lcy08g014020.1.cds3CDS
Lcy08g014020.1.cds2Lcy08g014020.1.cds2CDS
Lcy08g014020.1.cds1Lcy08g014020.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy08g014020.1Lcy08g014020.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity