Lcy08g014020 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g014020
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 44206311 .. 44209719 (-)
RNA-Seq ExpressionLcy08g014020
SyntenyLcy08g014020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGTAGATTCTAAAATCGTTTGGAATCTACTTCACGACCATGACCAACATTTCAATGAGATTGCTACCCTTTATTGACCATTCAAGCAATTATTCCATGCTCATCATATTAGGGGGTTCTCTCTTACTCCTAGAGATGAGAATAAAGTTGTTCATATGTTAGCTACTCACGCTCGCACATCGAAACACTCGAAAGTTTGGCTAGAAGAATGTTCCCTTTTGGGTTCCCATCATCTTAATTCAAGAGATGCCTCAAACTGATGTTTTTTCTTCTTTTCATGTTTAGCTTTTTTGTTTTTGTACTCTTCAAAAAAAAAAAAAAATCAAGGCTATTTGTCCTCCCTTTCAAGGAACAAAAAAGCTTCTTTAAACTACATTAAATTGAAAGTTCAAGGTTTTGTAAGGTTGGAAAGAAAAGATGTTTTCCATGGTCAGGAAAAAGGTACTCATAAAAGCAGTGGCATAGGCAATACCCACTTACACCCTCACATGTTTTAAGTAACCACATGGATACTATCACGATTTGAACAAGATAATGGCTAATTTTTCGTAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGAGTTTTAGAGATATAGGGCTCTTCAATCAGGCATTAATGACAAACACACATATGGAAAGAATTACATAGATCACAATCTCTATTGGCCCATATCTTAAAAACCAAATATTACCCTTAAGATGATTTTCTCAAGACAAAATTGGGAGGCAGACTATCCTATGTCTGGAGGGAGACGAGAGCTAGCCATGAAGGGGGAAGGTGGAGAATAGGAAATGGTGAATCAATCAACATTTATGAAGACCAGTGGGTTCCGAGGCCAAAAAACTTTAGACTGTTTACACCTTAACAACTGTTGACTGATCGCATAGTAAAAAGCTTTCTTCAAGTAGTCAAACTTGGAACAATCGTTTGCTAACATACCTTTTTGTGTAGGAGGATGTAGAAAAAGTCCAGGATATCCCAATTCTTCTAGCACTATGACAAAACAAGGAAATAAATAATCCAGAGCAGCTACAACTTACAAATTGTGAGGTCTCCACTAATGGTGCCCCCTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCAATTTTTTTTTCTTTGGACCGAATACCCGTTTGGGTTTAATGGGCTCTGATACCATATTATAACATGGGCTTCCATCTGAAAACCAATTGGCAATGAGTGAAGTGACCCTTGTAGCTTATAAATTGTGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACAAAGCCAACCCTATCGATTGGGCATCAAACTTCATAGCATAATTTATGGAGGCCTAAACAAAGTGAAATGAAGGCTAGGAGAGTTCGGGATGTGCTGGCAATTCCTGTCCCACTTGCTAGACACCACCACCCCATAACCATTTCAAGCTGAACGACATGAATGCAGCGGTAACAAATAGGGAAATGGGTTTTGGCATGATCATCCGCAATTCCAAATGCGAAACGATGAGAACTACAAAAAATATTAGGAGAATGAGTTGCTTAGTGGAGTGGGTAGAATCACAAACACTGGTAGATGATGTTCAATTAGCATGGGAAGGCATATCCCCAATTATTGGATAGATACAAATGATTTTACCCAAATCGTTTATGTATAGATATGCGAGTGAAAATATAATATACAATGAGTTTGTATTTGATACAACATATTTTACTTCTTTATAAATCAATTAATTGAGAAGATAAATATTTTACAAGAGAAAAAGGAGTCTATGTCATCAAAGCCACCAAACTTGTTTACTGCCACATCAACATTTCGTTAAATCAACTAACGATCAAATGATCTTGATACCATTTACAGATATGAAGGACTAAAAACACCAATATTTTGAAACCTAAAGACCAAATAGATGTCAAATATAAACATTAAAAGTGTATTTTGTCCTAATATATATTGGGTTAAAAATCACTTTTGGAATTTTCATATTAAAGTAACAGTTTAGTCCATGATCTTTGATTTGTAACGATTTAGTCTCTATACTTTCAATTTTGTAACAATTTAGTCCCTGATCATATGTAACAACTTAGTCCATGTACTTTAAAACTTGTAACGATATAGTCCTTATCGAGAAAATTAATATTAAGATTTAATGAAATTTCTTACATAGATAGATTAATAAACTAATTTGGGATCCATTATGTTTTTTTTTTTTTTTTTTCGACTCAATGGGACCCAATATGTTTATAAGCTACTAAGTCGTTAAATAATAAAAATCTACATTTAATTCTGATCAAATTTTTTGCTACTAGGATTAAATTGTTACAAATTTGAAAGTATAAAGACCAAAATGTTACTTATTAAAATTCAAGGACGAAATCGTTACTTTCATAAAAGTTCAGGGACTAGAAATGACTTTTAACCTATATTATTGTGTGTGGGTTGAATCAATCAATTTCATGGACCTAAGAATCGAACCAATCTGATCAATTTTTTTTAAGAAAAAGGTGAGAAAACCCAATCTAATTCAAATAATCAAATCAATTTTCAGCCTTTTTTTAGTTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGTAAGTCCGAGATTCTAATTTTTGATATGTTCAGTTCGTTTTCAGTTCCTTACCCAGTCTCTTTCTTGATTTTTTTGATCTGAGTCATGTTATCAAATGCTTTATGAAGTAAATCTGGCAGCATGGCAATTGTTTTTTGTTTAATTCGTCAACAGGGTTGAAGTTTGAGATTGCTGTGAAGTGAGTTTGATATGGAATTTTGAAGAGTTAAATCTCGAATTTTGTTGAACTGGCCGGCTTTAATGAAGGAGACGATATGAAATACTTTTTTATCTGTAGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

mRNA sequence

ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGATTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

Coding sequence (CDS)

ATGGATGTAGCAATAACTAATGGTGAGATGAGCTCGGGCACTATAATTCGAAATTCTAAAGGAGAGTCGATGGTAACTGCAGAAGTGTTTAGGACAATGTGTAGTTCAGTGGAATGGACAGAAACTCAAGCACTTATAAATGGGGCAACATTAGTGGTGGAATTCGGACTTACACCTGTTTGGGCGGAGGGTAGCTTAGAGCAAGGAAAGAAATTCATTGGCTCAAATGAGAGATTCGATGAGAAAGCTAAAGGACAGGGAATGGATGATTCAACAATATTTGGTATGGATTTGATCCTAGCTTCAGCATTCAGCCACCCACTTTCATATACCATCGTTCTCTCTTCACCGCCGTCGGCCACCGCCTCCGTCAATCACTCTTCAGTTCAGCCATCGGCCGTTCGGCGGCCCCTTTGCCCGAAACTTAATCGCTTATTTATTCTCTCTTCAGTTAAACCAGTTTGGCGAACCGATACGGTTTTTGTCAATTCGGCTAAGAAACCTAGTTCCAGGCATCTCCTTCTTCACTCATCGCTCGGATTTTCCTCTCCCCACTTACTGGGTGCAGTTTTCTCAATTTCACTGGAGAGATATGATTAA

Protein sequence

MDVAITNGEMSSGTIIRNSKGESMVTAEVFRTMCSSVEWTETQALINGATLVVEFGLTPVWAEGSLEQGKKFIGSNERFDEKAKGQGMDDSTIFGMDLILASAFSHPLSYTIVLSSPPSATASVNHSSVQPSAVRRPLCPKLNRLFILSSVKPVWRTDTVFVNSAKKPSSRHLLLHSSLGFSSPHLLGAVFSISLERYD
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 10..76
e-value: 9.8E-6
score: 25.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g014020.1Lcy08g014020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity