Lcy03g018730.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAACCCAGCACTTGAACTCCACTACTGGAAGTGGGGGTGGGGGTGGACAGACTCTAAACACTTGGCGAAATCCTCGCGAAGTTCCAGAAACCACCAAAACTGGTTTAACAATACAACATTTCTACGCTACTGATCACTTTTCCTGCACCTTCAACTACTATAAATACCCCATCTCCGTTTTGCTTTGGCCATGCAACAACAAACCATTTTCTCAAATTCTCGCTTCCTGTCCTTCCCTTAAACCCTTCTCATTCAACCTTTAATAAAACTACACCACAAAATCAAATGGCTTCCATCAGGGCTGTTACCATTGTTGCCTTGGTACTTGGCGTGTCTTTCATTGTATCAGAAAGCCGCGTCGCCAGGAAGGACTTGGGCCTCGACCTTGGCGGAGTCGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGATTAGGCGGTGGTAGTGGTAGTGGCAGTGGCAGTGGCTCGGGTTCCGGATCCGGGTCTGGCTCCGGTTCCGGATCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGATCCGAAGCCGGTTCGTACGCTGGTTCTCATGCGGGGTCTCGGGCTGGATCAGGGTCGGGTAGAAACAGGAACAATGGTGGATCCGGATCCGGGTCGGGTTCAGGATATGGTGCTGGTTCAGGCAGGGGAAGCGGCTCGGGCGGCGGTGAAGGATATGGTGAGGGCCATGGCTACGGCGAGGGGCATGGCTATGGCAATGACAATGGCGGCGAAAACTGAGATCAAAACTGATGATTATAATGGAATTAATTAAGGATGATCATCGTCTTTTTTTTTTTTTGGTACATAGATGAATAAAGGCTTTACAGGTGATGAATCCTGATTATTCCTGCTTTATTCTAGTTTCAATCATGTCAGCTGTATGTGTAATGAATTAGGGAATGTAATGCCATATGTAAATATTGAATAAATGTTTTTTTTTTTTTTTGAAATCTAAATATTGAATAAATGTTGCTATTTACTAT GAAAACCCAGCACTTGAACTCCACTACTGGAAGTGGGGGTGGGGGTGGACAGACTCTAAACACTTGGCGAAATCCTCGCGAAGTTCCAGAAACCACCAAAACTGGTTTAACAATACAACATTTCTACGCTACTGATCACTTTTCCTGCACCTTCAACTACTATAAATACCCCATCTCCGTTTTGCTTTGGCCATGCAACAACAAACCATTTTCTCAAATTCTCGCTTCCTGTCCTTCCCTTAAACCCTTCTCATTCAACCTTTAATAAAACTACACCACAAAATCAAATGGCTTCCATCAGGGCTGTTACCATTGTTGCCTTGGTACTTGGCGTGTCTTTCATTGTATCAGAAAGCCGCGTCGCCAGGAAGGACTTGGGCCTCGACCTTGGCGGAGTCGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGATTAGGCGGTGGTAGTGGTAGTGGCAGTGGCAGTGGCTCGGGTTCCGGATCCGGGTCTGGCTCCGGTTCCGGATCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGATCCGAAGCCGGTTCGTACGCTGGTTCTCATGCGGGGTCTCGGGCTGGATCAGGGTCGGGTAGAAACAGGAACAATGGTGGATCCGGATCCGGGTCGGGTTCAGGATATGGTGCTGGTTCAGGCAGGGGAAGCGGCTCGGGCGGCGGTGAAGGATATGGTGAGGGCCATGGCTACGGCGAGGGGCATGGCTATGGCAATGACAATGGCGGCGAAAACTGAGATCAAAACTGATGATTATAATGGAATTAATTAAGGATGATCATCGTCTTTTTTTTTTTTTGGTACATAGATGAATAAAGGCTTTACAGGTGATGAATCCTGATTATTCCTGCTTTATTCTAGTTTCAATCATGTCAGCTGTATGTGTAATGAATTAGGGAATGTAATGCCATATGTAAATATTGAATAAATGTTTTTTTTTTTTTTTGAAATCTAAATATTGAATAAATGTTGCTATTTACTAT ATGGCTTCCATCAGGGCTGTTACCATTGTTGCCTTGGTACTTGGCGTGTCTTTCATTGTATCAGAAAGCCGCGTCGCCAGGAAGGACTTGGGCCTCGACCTTGGCGGAGTCGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGATTAGGCGGTGGTAGTGGTAGTGGCAGTGGCAGTGGCTCGGGTTCCGGATCCGGGTCTGGCTCCGGTTCCGGATCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGATCCGAAGCCGGTTCGTACGCTGGTTCTCATGCGGGGTCTCGGGCTGGATCAGGGTCGGGTAGAAACAGGAACAATGGTGGATCCGGATCCGGGTCGGGTTCAGGATATGGTGCTGGTTCAGGCAGGGGAAGCGGCTCGGGCGGCGGTGAAGGATATGGTGAGGGCCATGGCTACGGCGAGGGGCATGGCTATGGCAATGACAATGGCGGCGAAAACTGA MASIRAVTIVALVLGVSFIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGGSGSGSGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSHAGSRAGSGSGRNRNNGGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGEGHGYGNDNGGEN Homology
BLAST of Lcy03g018730.1 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34 Identity = 134/166 (80.72%), Postives = 141/166 (84.94%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31 Identity = 124/165 (75.15%), Postives = 129/165 (78.18%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29 Identity = 119/161 (73.91%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. ExPASy TrEMBL
Match: A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29 Identity = 122/177 (68.93%), Postives = 137/177 (77.40%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. ExPASy TrEMBL
Match: A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29 Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida]) HSP 1 Score: 174.5 bits (441), Expect = 7.7e-40 Identity = 143/165 (86.67%), Postives = 147/165 (89.09%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 155.6 bits (392), Expect = 3.7e-34 Identity = 134/166 (80.72%), Postives = 141/166 (84.94%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. NCBI nr
Match: XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 147.9 bits (372), Expect = 7.7e-32 Identity = 126/181 (69.61%), Postives = 135/181 (74.59%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]) HSP 1 Score: 144.8 bits (364), Expect = 6.5e-31 Identity = 124/165 (75.15%), Postives = 129/165 (78.18%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. NCBI nr
Match: XP_023515819.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.6 bits (353), Expect = 1.2e-29 Identity = 120/161 (74.53%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein ) HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22 Identity = 103/158 (65.19%), Postives = 120/158 (75.95%), Query Frame = 0
BLAST of Lcy03g018730.1 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein ) HSP 1 Score: 72.0 bits (175), Expect = 5.0e-13 Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|