Lcy02g011180.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011180.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	Chr02: 33780838 .. 33785184 (+)
Sequence length	774
RNA-Seq Expression	Lcy02g011180.1
Synteny	Lcy02g011180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGGTGTGAATTATTTATTCGGTGTGATTGAAGTGTTTGCTATTGCTCATGCAAAAAGTGTCGTCCTTTCCCTGTGATACTTAATAGTTTATTGGTTCTTGTTGTACTTTCGGGGTGGAAAATATGAATATGTGATGCATTTGCTTCTTGTTAATTACTTCTTCACGGGTTGAGCCATCAAGAAAAGTATTTGCTTCTTGTTTTGGGGGAAAATTTATATTGCTATTTTTTTTTTCAAATGTCAGTATCCTAGATTAACTTTATATGCATTTTATCTACTGGATAAGTAACCAAGAATCACCCTTGTGTTGAGGTTGGAAGAGACACATTTCATTCATCATTGAATGCTCGTTTGTTGGATCAAGTTAATGCCAAACCTAAACAACTTGTGTTTTCTGAGGATGAAACGGGACTATCATTTTCTGCTTTTCAGCTCTCTCATAATTTTTACTAGATTCTTGATGGGTGAGTAAAATATCAATGCAACAGATTTCCTGTACTTGTTTGAGATGCATACACGTTCTAATGCCATGATTTATGATAAACCCATCAAATGAACCAAATTTGGTATTGGAAAGTTGGAAACTTCAATTTATTTTTTCCTCCCAACCTTGGATACTACTTGGGCAACTATGGCATGTTGGATCCAATAAACCAAAGTGTTATGGAAAAATTTTAAATCATTCTTTGTTTATAACTGCCTGTTATGTTTGGCCCCACTTTTAAGAGCTATATTATTTGTGTTGATATTTGGAATCTGCTATTCAACCCTGTATTTGACTAAAATTTGGATTTTCTTTTATTTAGAAATTTTGCTGAGAGATTTTTTATTTTCATAAATTTCCAGCGATGGAGTTGAAAGTAGCAATGGATTAAGGTTTGTTCTCTTGAAACAAAATTTCCATAGAATATATGGAATTTATAAAATTGACTGAGTCCGTCCACATTACTTTTGGGAAAATCCCAATGTAGCAGGTAGTAGGGTACTAGAAATGTTTCAAAGTTTTCCAGTTCTGTTGCACTTTTAATGTTTTCTAGATGTGATTCTACAAGGAGCCAGATTTGTTCCATATCTTTTCTCATTTCCTGTCGCTTTTTACTCTCTCCTCTCCAACTGGCATATTATTAGCTTTCTGAACAAAAGAAAGGGCTGGGACCTTGCTTCATTTATATGCAATCCAATTGAACATATGTACCTTTTTAAAAATTATTATCGTTATTACTTTTTGGCGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATAAATCTTCTCATATTCTGATGTTGATATAAGACCCAAGAATTCTTGTATCATTTAGTTCTCTCCTTAATACGTTGGAAACCATTTGTCCAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGGTGTTATCTTGACTTATTGTTAGCCTTTATATTTACAACATGCCTAATTCTAAATTATTGGCCAACCGTGACTTTAAAAGCATACTAAAATAGATTATTTCCTATTGGAGATTGTTACCGTAGTTTTGGACCAGCATAAGTTCACTAAATCATTGTCTGGCTTGTGTCTTACAACGGTTTAATTAATTTTATTTAAGAATTTAAGCCCTAAATTTTTCATGTTCTCTCCATTCTATTGAATATGCTACTGATATTTAGCCACAACTACACAACTAACAATCTTAATGGAACTGTTTGTTGCAGAGAAAGAATTAACACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGAAAGTTTGTAGGTTAAAGTTAGCTCAAATGGATTCCTCTCCTGTATTGTAATGCAACGTATGCCTTCATTTTCTGTCTGGCACCTTCTTTGTCCATTTTCTTATCTCTTCATAGCGTAACTTGATAGAGGTTATATATATGTGTATATGTATGTATGGGCACATGCTTATATGGTCGAACAGGTCCAATTGATTGCAAATATAACAAGTTAGTAATAGTATTAATGACGAAAAGGTTTGTGGTTCGAATACTCCAAGAAAAGTTTTATGCATTTGCAAATATAGTTTTGAAACAAGGTTCAAACTTTAAGGACTAAAATAAAACTTGTGAATGTCCAGCGGTATAATTGAAACCAACCCACTATGGGTATTTTTGATAATTTAACCATAATTTTAATATCTTACAAGTACGTCATTACAATTTTGATTTCGATTGTTCAATTTTGTTTCCTTGGATTTGATGTCTTTTCATCATCTACTTGACGATGCAGACATGATCCAAATTAGAATCAGCAAAACTATTTCTTCATCTCCTAGTCTCTTAAATTGTTAAAGTTATAAATCGAATTGAGAACTTGGGTTTTGAGGTACCTCATTCGATTTTTCTTCTTTTTAATTGGTTGTTTATGTTGTTTGCTACAGTCGGATGTAAAGTCTTTTAAGAGTATAAAGTTTCCTTACAAGTCCTTGATGCAATTACAGACTTAGTCTAGATTACATTGAATGAAATATGTTGCATTCTTGTCATTTTGTAAAAGTGATTTGCTGATTTTAATGGAATGAGGTTCAAGATGGACATAATTTCCCAACTATAGGAACAAGTTAACACCATTGTTGCTTACTTGCTTTAGCTTTCGAACACATTTGGACATTACAAAGAAATGTTCCTCTAGTTCACTTATTCCCCAATTACCCTGAACTGTCGTTCCACGAGAGGTCAATGCAAATATCATAAGCTAATGAATGCTGCTAAGTGGGTGTGATCGAATTGTTTGCTATTTGTTCATGCAAAAAGTGTAATCTTTTTCTAGTTTATTGCTTCTTGTTGTACTTTGGATATGGAAAATATTTTTTCACTCTAATATCATAATTCAGAACACATGGTAAGAGGAAAGGAGAGGAGTTTTTATTAATATGAAGGAAAAACTCTAATTTACTCTGTACAAACGAGTTCCTCTTGAAATACAAGAGATAGATATTAACACAAAAAAAAAAAAATTAACTACCTAAAACAAAAATCTTAACAAAAGCTTACTAACTAAAACAGAATATTAACAAATTAGCAATCAATGCGTACTCGTAATATACCCATTACCATCTTCCTCTTCAATGTCGTTATCCTTGATACTGTTGCTTCGAACTTCGAACGTGAATGGCAATAACGACCATATTCCACCCCCAACAAAAATGAAAAGATATAATTAATTTTAAGATTAAATTTTGGTTATAGTTACATTCATTTAAACATGGAGTACACATCATCATTTTGTTAGTTTATTAACAACAAAGACTAAACTGATTTATATTATGAAGTTTAGAGATCAAAATAGAAGTCGTAAAAGTTTAGGGATCAAAGTGGATTAAAGCTCAAAATTCAAGAGGCAAAATAGTATTTAAATCATGAATATTTCATGAACTTGTATAGGATGGAGATGGAGATTTTTTTTTTCCATATTTACAAATATACAAGTGACGAATGTTAGATTTATTTTGTTTTTTGGATGAATATTAAGATTTTGTTAAATCTACAAGTGCCCCAAAATCAAATGTTAAAATACATTATTTTTAGTCTTCATCAAATGAAACGGATTGGTTTTACTATACTGGTCACAATCACATATTTGAGTCTAAAAACCATCTATCTTTAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

mRNA sequence

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

Coding sequence (CDS)

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKILSQLDSTIGGAPGAFLGAFLSRTPVSKTAASCWRIDGGLSGAMTGEEEEAINQMEYLQEKNIGTEEKRANNSKGEQTDRVIKISESRTSTQEGSSKEHSEKLNEAGKVLKQMENLKIRADERANVFAIEDDYGEYSE

Homology

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-40
Identity = 96/132 (72.73%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICK 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAE    K
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAE----K 120

Query: 121 ILSQLDSTIGGA 132
            L Q+    G A
Sbjct: 121 ELKQVQELFGQA 128

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy Swiss-Prot
Match: Q7ZTI5 (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-04
Identity = 37/126 (29.37%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDNANIAEQPK 61
           D ++QLQ+ VN++A    N  G LQ+ APP   S       +  P  PTE+ A      +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 62

Query: 62  LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKIC 121
           L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L++ +   +  + 
Sbjct: 63  LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLE 122

Query: 122 KILSQL 125
           KI + L
Sbjct: 123 KIQTAL 122

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy Swiss-Prot
Match: Q2TBU8 (Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=MED21 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.4e-04
Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDNANIAEQPK 61
           D ++QLQ+ VN++A    N  G LQ+  PP   S       +  P  PTE+ A      +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 62

Query: 62  LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKIC 121
           L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L+  +   ++ + 
Sbjct: 63  LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLE 122

Query: 122 KILSQL 125
           KI S L
Sbjct: 123 KIQSAL 122

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL
Match: A0A6J1K432 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=3661 GN=LOC111491504 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL
Match: A0A6J1H2M0 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=3662 GN=LOC111459801 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-49
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.2e-49
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTEDNA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

[Close]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

[Close]

BLAST of Lcy02g011180.1 vs. NCBI nr
Match: KAG6605829.1 (Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >KAG7035787.1 Mediator of RNA polymerase II transcription subunit 21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-50
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPT+D+AN  EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-49
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAERELIQV 120

[Close]

BLAST of Lcy02g011180.1 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 6.3e-49
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180.1 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-41
Identity = 96/132 (72.73%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICK 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAE    K
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAE----K 120

Query: 121 ILSQLDSTIGGA 132
            L Q+    G A
Sbjct: 121 ELKQVQELFGQA 128

The following BLAST results are available for this feature:

BLAST of Lcy02g011180.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	7.3e-40	72.73	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]
Q7ZTI5	3.8e-04	29.37	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN...	[more]
Q2TBU8	8.4e-04	29.37	Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Lcy02g011180.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K432	1.5e-51	93.33	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H2M0	1.5e-51	93.33	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=...	[more]
A0A6J1DHM9	3.1e-49	91.67	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]
A0A0A0KZ00	5.2e-49	90.00	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A5A7TEZ9	2.0e-48	89.17	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]

BLAST of Lcy02g011180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605829.1	3.0e-51	93.33	Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyr...	[more]
XP_022958635.1	3.0e-51	93.33	mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_...	[more]
XP_023532119.1	2.0e-50	91.67	mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe...	[more]
XP_038893979.1	1.3e-49	90.83	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ...	[more]
XP_022153730.1	6.3e-49	91.67	mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]	[more]

BLAST of Lcy02g011180.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	5.2e-41	72.73	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..112
None	No IPR available	COILS	Coil	Coil	coord: 215..235
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 1..129 e-value: 1.4E-25 score: 91.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..226
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..116 e-value: 5.9E-24 score: 84.9
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..120
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy02g011180	Lcy02g011180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g011180.1.exon1	Lcy02g011180.1.exon1	exon
Lcy02g011180.1.exon2	Lcy02g011180.1.exon2	exon
Lcy02g011180.1.exon3	Lcy02g011180.1.exon3	exon
Lcy02g011180.1.exon4	Lcy02g011180.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g011180.1.cds1	Lcy02g011180.1.cds1	CDS
Lcy02g011180.1.cds2	Lcy02g011180.1.cds2	CDS
Lcy02g011180.1.cds3	Lcy02g011180.1.cds3	CDS
Lcy02g011180.1.cds4	Lcy02g011180.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy02g011180.1	Lcy02g011180.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003712	transcription coregulator activity