Lcy02g011180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	Chr02: 33780838 .. 33785184 (+)
RNA-Seq Expression	Lcy02g011180
Synteny	Lcy02g011180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGGTGTGAATTATTTATTCGGTGTGATTGAAGTGTTTGCTATTGCTCATGCAAAAAGTGTCGTCCTTTCCCTGTGATACTTAATAGTTTATTGGTTCTTGTTGTACTTTCGGGGTGGAAAATATGAATATGTGATGCATTTGCTTCTTGTTAATTACTTCTTCACGGGTTGAGCCATCAAGAAAAGTATTTGCTTCTTGTTTTGGGGGAAAATTTATATTGCTATTTTTTTTTTCAAATGTCAGTATCCTAGATTAACTTTATATGCATTTTATCTACTGGATAAGTAACCAAGAATCACCCTTGTGTTGAGGTTGGAAGAGACACATTTCATTCATCATTGAATGCTCGTTTGTTGGATCAAGTTAATGCCAAACCTAAACAACTTGTGTTTTCTGAGGATGAAACGGGACTATCATTTTCTGCTTTTCAGCTCTCTCATAATTTTTACTAGATTCTTGATGGGTGAGTAAAATATCAATGCAACAGATTTCCTGTACTTGTTTGAGATGCATACACGTTCTAATGCCATGATTTATGATAAACCCATCAAATGAACCAAATTTGGTATTGGAAAGTTGGAAACTTCAATTTATTTTTTCCTCCCAACCTTGGATACTACTTGGGCAACTATGGCATGTTGGATCCAATAAACCAAAGTGTTATGGAAAAATTTTAAATCATTCTTTGTTTATAACTGCCTGTTATGTTTGGCCCCACTTTTAAGAGCTATATTATTTGTGTTGATATTTGGAATCTGCTATTCAACCCTGTATTTGACTAAAATTTGGATTTTCTTTTATTTAGAAATTTTGCTGAGAGATTTTTTATTTTCATAAATTTCCAGCGATGGAGTTGAAAGTAGCAATGGATTAAGGTTTGTTCTCTTGAAACAAAATTTCCATAGAATATATGGAATTTATAAAATTGACTGAGTCCGTCCACATTACTTTTGGGAAAATCCCAATGTAGCAGGTAGTAGGGTACTAGAAATGTTTCAAAGTTTTCCAGTTCTGTTGCACTTTTAATGTTTTCTAGATGTGATTCTACAAGGAGCCAGATTTGTTCCATATCTTTTCTCATTTCCTGTCGCTTTTTACTCTCTCCTCTCCAACTGGCATATTATTAGCTTTCTGAACAAAAGAAAGGGCTGGGACCTTGCTTCATTTATATGCAATCCAATTGAACATATGTACCTTTTTAAAAATTATTATCGTTATTACTTTTTGGCGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATAAATCTTCTCATATTCTGATGTTGATATAAGACCCAAGAATTCTTGTATCATTTAGTTCTCTCCTTAATACGTTGGAAACCATTTGTCCAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGGTGTTATCTTGACTTATTGTTAGCCTTTATATTTACAACATGCCTAATTCTAAATTATTGGCCAACCGTGACTTTAAAAGCATACTAAAATAGATTATTTCCTATTGGAGATTGTTACCGTAGTTTTGGACCAGCATAAGTTCACTAAATCATTGTCTGGCTTGTGTCTTACAACGGTTTAATTAATTTTATTTAAGAATTTAAGCCCTAAATTTTTCATGTTCTCTCCATTCTATTGAATATGCTACTGATATTTAGCCACAACTACACAACTAACAATCTTAATGGAACTGTTTGTTGCAGAGAAAGAATTAACACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGAAAGTTTGTAGGTTAAAGTTAGCTCAAATGGATTCCTCTCCTGTATTGTAATGCAACGTATGCCTTCATTTTCTGTCTGGCACCTTCTTTGTCCATTTTCTTATCTCTTCATAGCGTAACTTGATAGAGGTTATATATATGTGTATATGTATGTATGGGCACATGCTTATATGGTCGAACAGGTCCAATTGATTGCAAATATAACAAGTTAGTAATAGTATTAATGACGAAAAGGTTTGTGGTTCGAATACTCCAAGAAAAGTTTTATGCATTTGCAAATATAGTTTTGAAACAAGGTTCAAACTTTAAGGACTAAAATAAAACTTGTGAATGTCCAGCGGTATAATTGAAACCAACCCACTATGGGTATTTTTGATAATTTAACCATAATTTTAATATCTTACAAGTACGTCATTACAATTTTGATTTCGATTGTTCAATTTTGTTTCCTTGGATTTGATGTCTTTTCATCATCTACTTGACGATGCAGACATGATCCAAATTAGAATCAGCAAAACTATTTCTTCATCTCCTAGTCTCTTAAATTGTTAAAGTTATAAATCGAATTGAGAACTTGGGTTTTGAGGTACCTCATTCGATTTTTCTTCTTTTTAATTGGTTGTTTATGTTGTTTGCTACAGTCGGATGTAAAGTCTTTTAAGAGTATAAAGTTTCCTTACAAGTCCTTGATGCAATTACAGACTTAGTCTAGATTACATTGAATGAAATATGTTGCATTCTTGTCATTTTGTAAAAGTGATTTGCTGATTTTAATGGAATGAGGTTCAAGATGGACATAATTTCCCAACTATAGGAACAAGTTAACACCATTGTTGCTTACTTGCTTTAGCTTTCGAACACATTTGGACATTACAAAGAAATGTTCCTCTAGTTCACTTATTCCCCAATTACCCTGAACTGTCGTTCCACGAGAGGTCAATGCAAATATCATAAGCTAATGAATGCTGCTAAGTGGGTGTGATCGAATTGTTTGCTATTTGTTCATGCAAAAAGTGTAATCTTTTTCTAGTTTATTGCTTCTTGTTGTACTTTGGATATGGAAAATATTTTTTCACTCTAATATCATAATTCAGAACACATGGTAAGAGGAAAGGAGAGGAGTTTTTATTAATATGAAGGAAAAACTCTAATTTACTCTGTACAAACGAGTTCCTCTTGAAATACAAGAGATAGATATTAACACAAAAAAAAAAAAATTAACTACCTAAAACAAAAATCTTAACAAAAGCTTACTAACTAAAACAGAATATTAACAAATTAGCAATCAATGCGTACTCGTAATATACCCATTACCATCTTCCTCTTCAATGTCGTTATCCTTGATACTGTTGCTTCGAACTTCGAACGTGAATGGCAATAACGACCATATTCCACCCCCAACAAAAATGAAAAGATATAATTAATTTTAAGATTAAATTTTGGTTATAGTTACATTCATTTAAACATGGAGTACACATCATCATTTTGTTAGTTTATTAACAACAAAGACTAAACTGATTTATATTATGAAGTTTAGAGATCAAAATAGAAGTCGTAAAAGTTTAGGGATCAAAGTGGATTAAAGCTCAAAATTCAAGAGGCAAAATAGTATTTAAATCATGAATATTTCATGAACTTGTATAGGATGGAGATGGAGATTTTTTTTTTCCATATTTACAAATATACAAGTGACGAATGTTAGATTTATTTTGTTTTTTGGATGAATATTAAGATTTTGTTAAATCTACAAGTGCCCCAAAATCAAATGTTAAAATACATTATTTTTAGTCTTCATCAAATGAAACGGATTGGTTTTACTATACTGGTCACAATCACATATTTGAGTCTAAAAACCATCTATCTTTAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

mRNA sequence

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

Coding sequence (CDS)

ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAACTCAAAATTTGTAAAATCCTTTCCCAATTGGATAGCACTATTGGAGGTGCTCCAGGCGCTTTCTTGGGAGCTTTTCTCTCAAGGACACCTGTGAGTAAAACGGCAGCTTCATGCTGGAGGATTGACGGTGGGCTAAGCGGTGCGATGACTGGAGAGGAAGAAGAAGCAATTAACCAAATGGAGTATTTACAAGAGAAAAACATTGGAACAGAAGAAAAAAGAGCCAACAACTCAAAGGGCGAGCAAACAGACCGAGTCATAAAGATCAGCGAAAGTAGAACTTCCACACAAGAAGGATCGTCTAAGGAACACAGCGAAAAACTAAATGAAGCAGGGAAAGTGTTAAAACAAATGGAGAACTTAAAAATCAGAGCAGATGAACGTGCAAATGTCTTCGCAATAGAAGACGACTATGGAGAATACTCAGAATGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKILSQLDSTIGGAPGAFLGAFLSRTPVSKTAASCWRIDGGLSGAMTGEEEEAINQMEYLQEKNIGTEEKRANNSKGEQTDRVIKISESRTSTQEGSSKEHSEKLNEAGKVLKQMENLKIRADERANVFAIEDDYGEYSE

Homology

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BLAST of Lcy02g011180 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-40
Identity = 96/132 (72.73%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICK 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAE    K
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAE----K 120

Query: 121 ILSQLDSTIGGA 132
            L Q+    G A
Sbjct: 121 ELKQVQELFGQA 128

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BLAST of Lcy02g011180 vs. ExPASy Swiss-Prot
Match: Q7ZTI5 (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-04
Identity = 37/126 (29.37%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDNANIAEQPK 61
           D ++QLQ+ VN++A    N  G LQ+ APP   S       +  P  PTE+ A      +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 62

Query: 62  LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKIC 121
           L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L++ +   +  + 
Sbjct: 63  LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLE 122

Query: 122 KILSQL 125
           KI + L
Sbjct: 123 KIQTAL 122

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BLAST of Lcy02g011180 vs. ExPASy Swiss-Prot
Match: Q2TBU8 (Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=MED21 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.4e-04
Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDNANIAEQPK 61
           D ++QLQ+ VN++A    N  G LQ+  PP   S       +  P  PTE+ A      +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 62

Query: 62  LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKIC 121
           L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L+  +   ++ + 
Sbjct: 63  LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLE 122

Query: 122 KILSQL 125
           KI S L
Sbjct: 123 KIQSAL 122

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BLAST of Lcy02g011180 vs. ExPASy TrEMBL
Match: A0A6J1K432 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=3661 GN=LOC111491504 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. ExPASy TrEMBL
Match: A0A6J1H2M0 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=3662 GN=LOC111459801 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-49
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.2e-49
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTEDNA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

[Close]

BLAST of Lcy02g011180 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

[Close]

BLAST of Lcy02g011180 vs. NCBI nr
Match: KAG6605829.1 (Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >KAG7035787.1 Mediator of RNA polymerase II transcription subunit 21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-51
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-50
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPT+D+AN  EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

[Close]

BLAST of Lcy02g011180 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-49
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL+AAE ++ ++
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAERELIQV 120

[Close]

BLAST of Lcy02g011180 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 6.3e-49
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICKI 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAE ++ ++
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

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BLAST of Lcy02g011180 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-41
Identity = 96/132 (72.73%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAELKICK 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAE    K
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAE----K 120

Query: 121 ILSQLDSTIGGA 132
            L Q+    G A
Sbjct: 121 ELKQVQELFGQA 128

The following BLAST results are available for this feature:

BLAST of Lcy02g011180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	7.3e-40	72.73	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]
Q7ZTI5	3.8e-04	29.37	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN...	[more]
Q2TBU8	8.4e-04	29.37	Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Lcy02g011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K432	1.5e-51	93.33	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H2M0	1.5e-51	93.33	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=...	[more]
A0A6J1DHM9	3.1e-49	91.67	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]
A0A0A0KZ00	5.2e-49	90.00	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A5A7TEZ9	2.0e-48	89.17	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]

BLAST of Lcy02g011180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605829.1	3.0e-51	93.33	Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyr...	[more]
XP_022958635.1	3.0e-51	93.33	mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_...	[more]
XP_023532119.1	2.0e-50	91.67	mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe...	[more]
XP_038893979.1	1.3e-49	90.83	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ...	[more]
XP_022153730.1	6.3e-49	91.67	mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]	[more]

BLAST of Lcy02g011180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	5.2e-41	72.73	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..112
None	No IPR available	COILS	Coil	Coil	coord: 215..235
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 1..129 e-value: 1.4E-25 score: 91.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..226
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..116 e-value: 5.9E-24 score: 84.9
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..120
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g011180.1	Lcy02g011180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003712	transcription coregulator activity