Lag0024771.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTGAGTTTTAATGAAATGATTCAGCTTATTTCAAAAAAAAAAATGAACATGTGTGGAAATGTTGAGATGTCAATGAAAATTTAATAATACCAAGAAAACATTAAGAGTTTCTTTTGTAAAATATAATATTAATTAGCCCCTAATTAGAACGTGATAAGCACAATTCTAGAACTAATACAAAACAACCAAAGAACTCAAGGAAAGAGACGAACATAGAGGAACAATTTGCTTAAGAAATGGTGCAAAAATAATAAGAGGCAAGAAAGTCAAATAATATATATTGATAGGATTACAGAGAATTCCCATATAATTTGAAAGCTGTCTAATTTGTAATATTTTAGGATATGGTGATGCAACATTAAAACTTTGGAGAGAGCACATGATGATAAAGTAAGAAATCAAGGCGCATGTCATGGAGATTCATTCGCCTTTTCTCTTGTATTTGGGATCTTACGACGTCGTATTCCCCTAATTTCCTTTACTTTTATTAGATTATTTAAGCATTTTCAATTTGGACACCCCTTAAGTTAGAGCTTATAACTTTAATCATTGTTTTGGATTTGACTTTTAGAGTCATTTGGATAATGTCAATTAATAATTTGATTTTGGGATTAGGAATCAAGAAAGAAATGATAATACAAGGATTTGAAGCAATTCTTCCATTAATATATAATACTATTATTTTTTTGTTGAAAGCTTAGGATAACAAAATATAGCTAACTTTAGTATATATTCGAAAATTTTTCTTTATCCGGAAAAGACCATTCTTGTAATCAACTCTATCTGAAATTGAGCAAGCAAATGATTTGGTTTCAAAAAATTAGTTATAGTAGGTATATTTTTACAAGTTCAATCATCTACCTTTTTCTGATTACAGTGAAAATATTAATAACATTTTTAAGTTGATAGTTTGAATTTACATTCATACATTTGCATGTCAATATACGCGAGAACATACCTCTCCCATTATCAGTAGAATTTTTTTTAATAATTAATAATCAAATTTTTTACTATTAAAAATTTTCTAAGTCTCAAAATAATTTTAAGATTTAAATCCAATTTTAGTCCACGAACACCATACTTTTTAAAATCTAATTTTAGTTCATAAAATTTAAACATTTTTTTTTCTTTTTAACTTTTTAAAAATATTTATTTTGGTATTTGTTATGGTCTTGCCACCTAACATATATGCTCAATCAAACTCGGCATTAGCCAACTAGCTATGTAATTAATACTTGTCGATGCTAGCTATGTTATTCATTTATTAAACAATAAATAATATAAATAGCATGAAAGACTAAAATGATTATTTTTCAAGTTCAAGATCAAGATAATCGTTTTGAAAGTTTAGTAGAGACCAAACAAAACCCTAAAAATCAAAGAATAAAATAGACCTTTTAAAGTTTTAGAGACTAAAATAAAATAATCGTAAAAGTCCAAAGACCAAAATGGGGTTTAAACCCATTTTTCCAAAACCTTGTTTCGAAACAAATTCGATATAGTTATTTTGAACTTTGTTGATGGTCAAATTTAGTCGGGAGGAAATCACTTAACCTTCACGTGCCACCAACGGTAAATTTGTATGAGAGGGGGAAGACGTGGCCTGCAAAAGAGTAAATCTGCACACTGGTGTGGTGTGTTTGTCACACCGCCTCCGATGCTTAAGTAAGCAAACATAAGGAAGGGAGCAAGAGAGAAGAGTAGACAATAGAGACTTTGGGATCATTTCTTCAGTGATGAAGAATGGTTTAAATACTTGCTCATGCCTTAAGGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTACGTCCAAAATTACCTATAACAAACTTCATGTCATTCAAGTTTAATTTCTATAACTTATTCCTAAAAAAAAAAAAAAAAAGTAGAACTCAGCCCACCCAAAAATGAACGATCTCAACTGAACCCAAACTTCCTATTATGGTGGGTTCAAATGGTACCACATTGATCTCCTTTTTGTGGTGTGGTGTGGTGATACTTGAAATTGAAGCCAACAAAAATTAATTCTTTGAGTGAAAGTGAATTCGAGTGGATATCCATCATTTGTCTTTTCCCTCCCACTTGATGAACTGCACCCTTTAGAGTTCAAACTTCAAAGTTTTCCAAAAAAAAATCTTCTTCATCTACATAATTCCAATATTAAAAGTTTTTATAGAGTCTAAATGTAAATTATCTATTTAAACTTTAGGTAAATTAGATAATATGTCACATATGAACGTAAAGGTATAATAGGTTTATGGGTTTTGATAAATGAGTGGTAATTTAAATTAAAAGCCCATCTGCTTGTATAATCATTATTTTTCCTCTTCCTCTTCTCTTCTGCCCTTTTTACTCTTGGGTCAACTTTGCAAATCATAGGCTAAGGTAGAGTTTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATGGCTAAGGTAGGGTTAACTTTATATATTCTTCTATTATGATCAACGTCATTCTATCTGCGTTGGGAAATAAAACTCAAAAGTTAGGTTTCATCAAATAGATTATAGTTTGGTTTGTAGCTAGGTGACTCATATTTAACTTTTTATACAAATTCAAGTTTGCGTGGCTTGAAATTAGATTTGTTTAGTGCATAAATAAGAAAGTTACAAATCCTAATTTGCAGGGAAAAAGGACTAAAAAGTGAGTTTATCTATTTATGTTTGGTTGGTAGGTTTTTTTATTTATGAAATTATATAATATGAACTGATGATTTTCAAGAGAAAATTCATAGGTTTTAAGAAATCTGTAATTGAGAGTAAACAATTGTACATTTAACTTCACAATTCTACACAAAACAAAAGAATTTAGTTGGGCCGACTACAGCCCAGATTGGTCGTACAAAGAGGGGAGGTAGATCGAATGGGCCAAGTAATCAAACAATAGCCCATTGTTTAACAAACCTGCACTTTAGAGTCAACGATTTACCGACTCCAATTCATTCGACAAATATTCGTTTAATATAGTTTGAGAAATTTGGGGGTATAGCCATTTAGTGGGGTGAAACTGAAACACAGCCAAAAGGAAAAAACAAATGAGATATGGCCACACGTGAGGTAGGCGTGACCACCATAAATATGATATCCCCATTTTACCCTTTGTGCAACCTTCAAACCAACAGCCCCTAAAATTACGTTTACTGTATCTAAACGAGCTGCCCAACCGAATCTCCTTAGGTTTCGGTTTGGATTTCAAAGTTTAGATTTTAAAAACTATTTTTGCATCAGAATAACGTTTCCCCCTTTTTTGTTTTTGGTTTTTTGGTTGTTATTTCTGCGGAAAATCAACTGGCACTTTTTTTTCCTGTGTGTTCTTCATCTTTTGTTTTTATCCTTCTTTTTCGTGTTAGCATAACTGGATGGAAATTGATGAGCCTAGGTTACGTCATATACCAGGTATGTGAGTGCGACATGGTTATATTTTTACACTGGTTGGCAGTATTTTTTTCGTTTATCTTGTGACGTTTTTTTTTGTGTGACATGCACATTGTGTTCAATCTAGAATGGATGTATGCAACAGACTTGACGATACTCTTCGGCGGGAGGTGAGATGGGAATAACCAATACCATGGGTCACAAATACAAGTATGGACACAGACGGGCGGGAGGTGGATGGAAATAACTAAAACCATGGGTCACAAATACAGAGTATGGACACAGACCGGCGGGAGGTGGGATGGAAATAACCAATACCATGGGTCACAAATACAGAGTATGGACACAGACCTCACACACCACAAAAACATAGTTCATGTAGAAGACTCTTTTTTCGAATCCCTATCTTTCCTTTTAGGGTCAGGAGATTTCTTAAAGTCCTGCATGATTGGATGCTTACAAATTCCTCCCTTAAATCTCGTCATGGGTAGTTAGTTTATGTATAGAAATCCCTCCATAATTTTTTTTAGTTTAAACTATATAAATCTAAAGGAAAAACAGAATCTCCATAGGGATTATATCCGAGACAGGAAGGGAGGCCTAAAACCTTAGGGAATCGATCTATGTTCGGGATTTATCTCAGTAAGCACTTAAATCGCTACATGCATTGGTCGGTGGAGGTGTTGTGTTTGCAAGATTTTCAGAATGGAGCATGCACACCTTAATTTGAAGAGGGAGATGACAGCAATCGGCACGACGAAGTGGGATGAAATCAGATGGAGAGACCGGAGACGCAACAACAACGTCAGTTTGTGCATCGATTGAGGTCTGGAACTTTGAAGGAAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTTACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTTACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA MPVMEWHKRCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSMLWLGTAVQVNALGSGSPQCHCNHIVLVLSVRRRSMAELGGNGASRSIGDQTESDELDLDHGQKPDPFGLGPTHWPVSPPGSILQSYFWTRVGLFSSAPCYVIYQVNGEDDNGMGGEDDNGDGWGGNVERVVFRCGRMGNDGTN Homology
BLAST of Lag0024771.1 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia]) HSP 1 Score: 74.3 bits (181), Expect = 2.2e-09 Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = 0
BLAST of Lag0024771.1 vs. NCBI nr
Match: XP_011465330.1 (PREDICTED: uncharacterized protein LOC105351724 [Fragaria vesca subsp. vesca]) HSP 1 Score: 68.2 bits (165), Expect = 1.6e-07 Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 0
BLAST of Lag0024771.1 vs. NCBI nr
Match: KAF4401838.1 (hypothetical protein G4B88_013125 [Cannabis sativa]) HSP 1 Score: 67.0 bits (162), Expect = 3.5e-07 Identity = 44/168 (26.19%), Postives = 72/168 (42.86%), Query Frame = 0
BLAST of Lag0024771.1 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia]) HSP 1 Score: 65.9 bits (159), Expect = 7.9e-07 Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 0
BLAST of Lag0024771.1 vs. NCBI nr
Match: XP_016200263.1 (uncharacterized protein LOC107641282 [Arachis ipaensis] >XP_025653269.1 uncharacterized protein LOC112749225 [Arachis hypogaea]) HSP 1 Score: 65.1 bits (157), Expect = 1.3e-06 Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0
BLAST of Lag0024771.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09 Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = 0
BLAST of Lag0024771.1 vs. ExPASy TrEMBL
Match: A0A7J6I4A1 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013125 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07 Identity = 44/168 (26.19%), Postives = 72/168 (42.86%), Query Frame = 0
BLAST of Lag0024771.1 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07 Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 0
BLAST of Lag0024771.1 vs. ExPASy TrEMBL
Match: A0A803P3N7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06 Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 0
BLAST of Lag0024771.1 vs. ExPASy TrEMBL
Match: A0A2H0RMS8 (Ribonuclease H OS=Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_50_16 OX=1975039 GN=COV06_00175 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06 Identity = 46/131 (35.11%), Postives = 61/131 (46.56%), Query Frame = 0
BLAST of Lag0024771.1 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07 Identity = 40/127 (31.50%), Postives = 59/127 (46.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|