Lag0024771 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024771
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 5651200 .. 5656428 (+)
RNA-Seq ExpressionLag0024771
SyntenyLag0024771
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTGAGTTTTAATGAAATGATTCAGCTTATTTCAAAAAAAAAAATGAACATGTGTGGAAATGTTGAGATGTCAATGAAAATTTAATAATACCAAGAAAACATTAAGAGTTTCTTTTGTAAAATATAATATTAATTAGCCCCTAATTAGAACGTGATAAGCACAATTCTAGAACTAATACAAAACAACCAAAGAACTCAAGGAAAGAGACGAACATAGAGGAACAATTTGCTTAAGAAATGGTGCAAAAATAATAAGAGGCAAGAAAGTCAAATAATATATATTGATAGGATTACAGAGAATTCCCATATAATTTGAAAGCTGTCTAATTTGTAATATTTTAGGATATGGTGATGCAACATTAAAACTTTGGAGAGAGCACATGATGATAAAGTAAGAAATCAAGGCGCATGTCATGGAGATTCATTCGCCTTTTCTCTTGTATTTGGGATCTTACGACGTCGTATTCCCCTAATTTCCTTTACTTTTATTAGATTATTTAAGCATTTTCAATTTGGACACCCCTTAAGTTAGAGCTTATAACTTTAATCATTGTTTTGGATTTGACTTTTAGAGTCATTTGGATAATGTCAATTAATAATTTGATTTTGGGATTAGGAATCAAGAAAGAAATGATAATACAAGGATTTGAAGCAATTCTTCCATTAATATATAATACTATTATTTTTTTGTTGAAAGCTTAGGATAACAAAATATAGCTAACTTTAGTATATATTCGAAAATTTTTCTTTATCCGGAAAAGACCATTCTTGTAATCAACTCTATCTGAAATTGAGCAAGCAAATGATTTGGTTTCAAAAAATTAGTTATAGTAGGTATATTTTTACAAGTTCAATCATCTACCTTTTTCTGATTACAGTGAAAATATTAATAACATTTTTAAGTTGATAGTTTGAATTTACATTCATACATTTGCATGTCAATATACGCGAGAACATACCTCTCCCATTATCAGTAGAATTTTTTTTAATAATTAATAATCAAATTTTTTACTATTAAAAATTTTCTAAGTCTCAAAATAATTTTAAGATTTAAATCCAATTTTAGTCCACGAACACCATACTTTTTAAAATCTAATTTTAGTTCATAAAATTTAAACATTTTTTTTTCTTTTTAACTTTTTAAAAATATTTATTTTGGTATTTGTTATGGTCTTGCCACCTAACATATATGCTCAATCAAACTCGGCATTAGCCAACTAGCTATGTAATTAATACTTGTCGATGCTAGCTATGTTATTCATTTATTAAACAATAAATAATATAAATAGCATGAAAGACTAAAATGATTATTTTTCAAGTTCAAGATCAAGATAATCGTTTTGAAAGTTTAGTAGAGACCAAACAAAACCCTAAAAATCAAAGAATAAAATAGACCTTTTAAAGTTTTAGAGACTAAAATAAAATAATCGTAAAAGTCCAAAGACCAAAATGGGGTTTAAACCCATTTTTCCAAAACCTTGTTTCGAAACAAATTCGATATAGTTATTTTGAACTTTGTTGATGGTCAAATTTAGTCGGGAGGAAATCACTTAACCTTCACGTGCCACCAACGGTAAATTTGTATGAGAGGGGGAAGACGTGGCCTGCAAAAGAGTAAATCTGCACACTGGTGTGGTGTGTTTGTCACACCGCCTCCGATGCTTAAGTAAGCAAACATAAGGAAGGGAGCAAGAGAGAAGAGTAGACAATAGAGACTTTGGGATCATTTCTTCAGTGATGAAGAATGGTTTAAATACTTGCTCATGCCTTAAGGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTACGTCCAAAATTACCTATAACAAACTTCATGTCATTCAAGTTTAATTTCTATAACTTATTCCTAAAAAAAAAAAAAAAAAGTAGAACTCAGCCCACCCAAAAATGAACGATCTCAACTGAACCCAAACTTCCTATTATGGTGGGTTCAAATGGTACCACATTGATCTCCTTTTTGTGGTGTGGTGTGGTGATACTTGAAATTGAAGCCAACAAAAATTAATTCTTTGAGTGAAAGTGAATTCGAGTGGATATCCATCATTTGTCTTTTCCCTCCCACTTGATGAACTGCACCCTTTAGAGTTCAAACTTCAAAGTTTTCCAAAAAAAAATCTTCTTCATCTACATAATTCCAATATTAAAAGTTTTTATAGAGTCTAAATGTAAATTATCTATTTAAACTTTAGGTAAATTAGATAATATGTCACATATGAACGTAAAGGTATAATAGGTTTATGGGTTTTGATAAATGAGTGGTAATTTAAATTAAAAGCCCATCTGCTTGTATAATCATTATTTTTCCTCTTCCTCTTCTCTTCTGCCCTTTTTACTCTTGGGTCAACTTTGCAAATCATAGGCTAAGGTAGAGTTTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATGGCTAAGGTAGGGTTAACTTTATATATTCTTCTATTATGATCAACGTCATTCTATCTGCGTTGGGAAATAAAACTCAAAAGTTAGGTTTCATCAAATAGATTATAGTTTGGTTTGTAGCTAGGTGACTCATATTTAACTTTTTATACAAATTCAAGTTTGCGTGGCTTGAAATTAGATTTGTTTAGTGCATAAATAAGAAAGTTACAAATCCTAATTTGCAGGGAAAAAGGACTAAAAAGTGAGTTTATCTATTTATGTTTGGTTGGTAGGTTTTTTTATTTATGAAATTATATAATATGAACTGATGATTTTCAAGAGAAAATTCATAGGTTTTAAGAAATCTGTAATTGAGAGTAAACAATTGTACATTTAACTTCACAATTCTACACAAAACAAAAGAATTTAGTTGGGCCGACTACAGCCCAGATTGGTCGTACAAAGAGGGGAGGTAGATCGAATGGGCCAAGTAATCAAACAATAGCCCATTGTTTAACAAACCTGCACTTTAGAGTCAACGATTTACCGACTCCAATTCATTCGACAAATATTCGTTTAATATAGTTTGAGAAATTTGGGGGTATAGCCATTTAGTGGGGTGAAACTGAAACACAGCCAAAAGGAAAAAACAAATGAGATATGGCCACACGTGAGGTAGGCGTGACCACCATAAATATGATATCCCCATTTTACCCTTTGTGCAACCTTCAAACCAACAGCCCCTAAAATTACGTTTACTGTATCTAAACGAGCTGCCCAACCGAATCTCCTTAGGTTTCGGTTTGGATTTCAAAGTTTAGATTTTAAAAACTATTTTTGCATCAGAATAACGTTTCCCCCTTTTTTGTTTTTGGTTTTTTGGTTGTTATTTCTGCGGAAAATCAACTGGCACTTTTTTTTCCTGTGTGTTCTTCATCTTTTGTTTTTATCCTTCTTTTTCGTGTTAGCATAACTGGATGGAAATTGATGAGCCTAGGTTACGTCATATACCAGGTATGTGAGTGCGACATGGTTATATTTTTACACTGGTTGGCAGTATTTTTTTCGTTTATCTTGTGACGTTTTTTTTTGTGTGACATGCACATTGTGTTCAATCTAGAATGGATGTATGCAACAGACTTGACGATACTCTTCGGCGGGAGGTGAGATGGGAATAACCAATACCATGGGTCACAAATACAAGTATGGACACAGACGGGCGGGAGGTGGATGGAAATAACTAAAACCATGGGTCACAAATACAGAGTATGGACACAGACCGGCGGGAGGTGGGATGGAAATAACCAATACCATGGGTCACAAATACAGAGTATGGACACAGACCTCACACACCACAAAAACATAGTTCATGTAGAAGACTCTTTTTTCGAATCCCTATCTTTCCTTTTAGGGTCAGGAGATTTCTTAAAGTCCTGCATGATTGGATGCTTACAAATTCCTCCCTTAAATCTCGTCATGGGTAGTTAGTTTATGTATAGAAATCCCTCCATAATTTTTTTTAGTTTAAACTATATAAATCTAAAGGAAAAACAGAATCTCCATAGGGATTATATCCGAGACAGGAAGGGAGGCCTAAAACCTTAGGGAATCGATCTATGTTCGGGATTTATCTCAGTAAGCACTTAAATCGCTACATGCATTGGTCGGTGGAGGTGTTGTGTTTGCAAGATTTTCAGAATGGAGCATGCACACCTTAATTTGAAGAGGGAGATGACAGCAATCGGCACGACGAAGTGGGATGAAATCAGATGGAGAGACCGGAGACGCAACAACAACGTCAGTTTGTGCATCGATTGAGGTCTGGAACTTTGAAGGAAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA

mRNA sequence

ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTTACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA

Coding sequence (CDS)

ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTATATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATGGAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAATGCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTACATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTGCGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTTGTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAAGCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTTACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGAATGGGGAACGACGGAACAAATTGA

Protein sequence

MPVMEWHKRCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSMLWLGTAVQVNALGSGSPQCHCNHIVLVLSVRRRSMAELGGNGASRSIGDQTESDELDLDHGQKPDPFGLGPTHWPVSPPGSILQSYFWTRVGLFSSAPCYVIYQVNGEDDNGMGGEDDNGDGWGGNVERVVFRCGRMGNDGTN
Homology
[Close]
BLAST of Lag0024771 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-09
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = 0 

Query: 9    RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDC 68
            +CEW+  +++       +N + R +           H P       +     +++L TD 
Sbjct: 1260 KCEWLTPFLDSHSQAQMSNYSPRTQSN---------HRPVVQYWRPS--SSVSLKLNTDA 1319

Query: 69   AVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCAR 128
            A R  G  T +G ++   +  +        P   +P + E+  ++ GL+       T   
Sbjct: 1320 ACR--GASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLE 1379

Query: 129  VYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK 186
            V SDS  AIQ+I+ +I T  D  +W+M+I+ ++  F F+SFSH SR+ N  A  LAK
Sbjct: 1380 VESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK 1423

[Close]
BLAST of Lag0024771 vs. NCBI nr
Match: XP_011465330.1 (PREDICTED: uncharacterized protein LOC105351724 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-07
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 0 

Query: 51  ECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVN 110
           E   + + +   +L+ D A   +    G GAVV   NG++ G +      +  P + E  
Sbjct: 74  EVGRSSMYEQAARLYFDGACDSNTNIVGIGAVVLSDNGELMGAISVPMEAVLKPHIIEAL 133

Query: 111 ALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFS 170
           AL HG++L ++M +T   +  D+ N I  I  ++   SD+   +  +R M+   E++S+ 
Sbjct: 134 ALWHGMKLCRQMGVTKLAIAGDAVNVINAIGRNVLDLSDIGEIMDAVRMMNAELEWVSWK 193

Query: 171 HVSREGNTRADTLAKNALARRTSM 195
           HV +  N  A TLA++AL    SM
Sbjct: 194 HVRKRQNRIAHTLARHALKMVQSM 217

[Close]
BLAST of Lag0024771 vs. NCBI nr
Match: KAF4401838.1 (hypothetical protein G4B88_013125 [Cannabis sativa])

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-07
Identity = 44/168 (26.19%), Postives = 72/168 (42.86%), Query Frame = 0 

Query: 24  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVV 83
           PC++     +D  I  + S +        ++++L   T  LF D  +  +   TG G V 
Sbjct: 293 PCSSMAKDYQDAQIHSSVSSMTNNHSPAVQDHILLPSTTALFVDATLSTNAPATGIGMVF 352

Query: 84  FGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGD 143
                 +  +   + P   +P   E  AL  GL+      +T   ++SD  N +  + G+
Sbjct: 353 MQGLSHIQQSARIFKPGASSPIFAEAQALCEGLQWCLSSNLTPRFIFSDCINLVSKVNGN 412

Query: 144 IPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR 192
               S +   + QIR    SF   +  HVSR+ N +A +LAK AL  R
Sbjct: 413 WHDYSPLSTLVHQIRTFLSSFPEATLLHVSRQHNGKAHSLAKLALRLR 460

[Close]
BLAST of Lag0024771 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-07
Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 0 

Query: 62  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQR 121
           V++ TD AV    EG+G G ++   N ++ G M  +   + TP + ++ A+  GL L  R
Sbjct: 75  VKMNTDAAVSE--EGSGVGVLLREGNAEIVGAMVDFH-MVKTPLLAKILAIREGLSLATR 134

Query: 122 MQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRAD 181
           + +    V +DS  A+ +I    P   +   W+  IR  +  F+ + F HV RE N  A 
Sbjct: 135 LGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQEICFQHVFRESNAVAY 194

Query: 182 TLAKNALARRTSMLW 197
            L +  ++ R   LW
Sbjct: 195 HLGRETISLRCGFLW 206

[Close]
BLAST of Lag0024771 vs. NCBI nr
Match: XP_016200263.1 (uncharacterized protein LOC107641282 [Arachis ipaensis] >XP_025653269.1 uncharacterized protein LOC112749225 [Arachis hypogaea])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-06
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 58  QDHTVQLFTDCAVRPHGEGTGYGAVVFGING-QVCGNMEFYDPTLHTPFVGEVNALIHGL 117
           Q HT +L+ D A   + EG+G G ++      Q+  ++ F   T +     E  AL+  L
Sbjct: 83  QQHTWELYVDGA--SNNEGSGAGVLLTNKEDLQLEKSIRFTFQTSNNQ--AEYEALLARL 142

Query: 118 RLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDV---YHWIMQIRRMSDSFEFLSFSHVS 177
           RL Q + IT  +VY DS   +Q + G       +   YH    ++++  +F F+  +H++
Sbjct: 143 RLAQSLNITHLQVYCDSQLVVQQVTGHFQVKDQLLEKYH--SSVKKLLTNFHFIQITHIA 202

Query: 178 REGNTRADTLAKNALARR 192
           RE NTRAD L+K A  R+
Sbjct: 203 REHNTRADALSKLATTRK 214

[Close]
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = 0 

Query: 9    RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDC 68
            +CEW+  +++       +N + R +           H P       +     +++L TD 
Sbjct: 1260 KCEWLTPFLDSHSQAQMSNYSPRTQSN---------HRPVVQYWRPS--SSVSLKLNTDA 1319

Query: 69   AVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCAR 128
            A R  G  T +G ++   +  +        P   +P + E+  ++ GL+       T   
Sbjct: 1320 ACR--GASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLE 1379

Query: 129  VYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK 186
            V SDS  AIQ+I+ +I T  D  +W+M+I+ ++  F F+SFSH SR+ N  A  LAK
Sbjct: 1380 VESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK 1423

[Close]
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match: A0A7J6I4A1 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013125 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07
Identity = 44/168 (26.19%), Postives = 72/168 (42.86%), Query Frame = 0 

Query: 24  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVV 83
           PC++     +D  I  + S +        ++++L   T  LF D  +  +   TG G V 
Sbjct: 293 PCSSMAKDYQDAQIHSSVSSMTNNHSPAVQDHILLPSTTALFVDATLSTNAPATGIGMVF 352

Query: 84  FGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGD 143
                 +  +   + P   +P   E  AL  GL+      +T   ++SD  N +  + G+
Sbjct: 353 MQGLSHIQQSARIFKPGASSPIFAEAQALCEGLQWCLSSNLTPRFIFSDCINLVSKVNGN 412

Query: 144 IPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR 192
               S +   + QIR    SF   +  HVSR+ N +A +LAK AL  R
Sbjct: 413 WHDYSPLSTLVHQIRTFLSSFPEATLLHVSRQHNGKAHSLAKLALRLR 460

[Close]
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 0 

Query: 62  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQR 121
           V++ TD AV    EG+G G ++   N ++ G M  +   + TP + ++ A+  GL L  R
Sbjct: 75  VKMNTDAAVSE--EGSGVGVLLREGNAEIVGAMVDFH-MVKTPLLAKILAIREGLSLATR 134

Query: 122 MQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRAD 181
           + +    V +DS  A+ +I    P   +   W+  IR  +  F+ + F HV RE N  A 
Sbjct: 135 LGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQEICFQHVFRESNAVAY 194

Query: 182 TLAKNALARRTSMLW 197
            L +  ++ R   LW
Sbjct: 195 HLGRETISLRCGFLW 206

[Close]
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match: A0A803P3N7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 0 

Query: 55  NVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIH 114
           N  ++ + QL+TD  +       G GAVV   NGQV   +        TP + E  AL  
Sbjct: 478 NQAKEESYQLYTDATINDKNSKIGLGAVVKDWNGQVIATVSVPLSAKVTPTMAEAMALRS 537

Query: 115 GLRLLQRMQITCARVYSDS---SNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSH 174
           GL     ++I  + +++DS   +N I   K ++   +DV   I+ I+     F   S  +
Sbjct: 538 GLSWCCSVRIPLSTIFTDSKQLANKIHSHKKELSALADV---IVDIKNSLSHFPDASVCY 597

Query: 175 VSREGNTRADTLAKNALARRTSMLWLGTAVQVN 205
             R+ NT A  +AK AL     ++W  T   +N
Sbjct: 598 TPRDNNTHAHHMAKEALGLDEELVWKDTCPNLN 627

[Close]
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match: A0A2H0RMS8 (Ribonuclease H OS=Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_50_16 OX=1975039 GN=COV06_00175 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 46/131 (35.11%), Postives = 61/131 (46.56%), Query Frame = 0 

Query: 64  LFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQ 123
           LFTD   R +    G GAV+F  N +V      Y  T  T  V E  A+I GL L     
Sbjct: 5   LFTDGGSRGNPGPAGSGAVLFDENKEVIDEAMLYLGT-ETNNVAEYTAIIIGLELALAHG 64

Query: 124 ITCARVYSDSSNAIQMIKGD--IPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRAD 183
           +T    Y DS  A++ + G   +        WI Q+R ++  FE + F+HV RE NT AD
Sbjct: 65  VTTLDSYMDSELAVKQLNGQYRVKNPGLAKLWI-QVRELASKFERVRFTHVRREQNTHAD 124

Query: 184 TLAKNALARRT 193
            L    L + T
Sbjct: 125 ALVNKVLDQHT 133

[Close]
BLAST of Lag0024771 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 40/127 (31.50%), Postives = 59/127 (46.46%), Query Frame = 0 

Query: 62  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQR 121
           V +FTD A +   +  G+G V+         + +     +  P + E  AL   L+  Q 
Sbjct: 31  VTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLALQYAQS 90

Query: 122 MQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRAD 181
           + IT   + SDS   I  I  + P+T + Y  I  I  +S  F  +SFS V R  N  AD
Sbjct: 91  IGITKLSMASDSQQLITAITSESPST-EFYGIIFDILNLSLGFADVSFSFVPRSENRVAD 150

Query: 182 TLAKNAL 189
            LAK++L
Sbjct: 151 ELAKSSL 156

The following BLAST results are available for this feature:
BLAST of Lag0024771 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158377.12.2e-0927.12uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_011465330.11.6e-0729.17PREDICTED: uncharacterized protein LOC105351724 [Fragaria vesca subsp. vesca][more]
KAF4401838.13.5e-0726.19hypothetical protein G4B88_013125 [Cannabis sativa][more]
XP_022158489.17.9e-0729.63uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_016200263.11.3e-0631.88uncharacterized protein LOC107641282 [Arachis ipaensis] >XP_025653269.1 uncharac... [more]
BLAST of Lag0024771 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0024771 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DX301.1e-0927.12uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A7J6I4A11.7e-0726.19RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013125 PE=... [more]
A0A6J1DZK33.8e-0729.63uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803P3N71.1e-0628.76Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2H0RMS81.1e-0635.11Ribonuclease H OS=Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10... [more]
BLAST of Lag0024771 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G09490.11.3e-0731.50Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 60..194
e-value: 3.4E-21
score: 77.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 75..187
e-value: 3.1E-19
score: 69.0
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 58..189
score: 10.993599
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..258
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 41..196
NoneNo IPR availablePANTHERPTHR47723:SF1OS05G0353850 PROTEINcoord: 41..196
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 64..185
e-value: 4.78401E-19
score: 79.6656
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 61..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024771.1Lag0024771.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity