Lag0024605.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024605.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	4-coumarate--CoA ligase-like 9
Location	chr10: 4323838 .. 4324164 (-)
Sequence length	327
RNA-Seq Expression	Lag0024605.1
Synteny	Lag0024605.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

mRNA sequence

ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

Coding sequence (CDS)

ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

Protein sequence

MKVYIVSQFRKWAAFSNCTPNPSANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGSNDGFLNGKIDQSDSAAILYSSGTTG

Homology

[Close]

BLAST of Lag0024605.1 vs. NCBI nr
Match: KAA0055317.1 (4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

[Close]

BLAST of Lag0024605.1 vs. NCBI nr
Match: XP_016899602.1 (PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo] >TYJ99242.1 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

[Close]

BLAST of Lag0024605.1 vs. NCBI nr
Match: XP_016899601.1 (PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

[Close]

BLAST of Lag0024605.1 vs. NCBI nr
Match: ADN33954.1 (4-coumarate-CoA ligase [Cucumis melo subsp. melo])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

[Close]

BLAST of Lag0024605.1 vs. NCBI nr
Match: XP_038894374.1 (4-coumarate--CoA ligase-like 9 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQ+  CK VIAFA SS ASK+PRL  GTVLI S EFLS+MTE +R DG 
Sbjct: 121 ANPISSESEIAHQINLCKPVIAFATSSTASKIPRLQFGTVLIDSPEFLSLMTESSRSDGE 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           +D  ++GKI+Q+DSAAILYSSGTTG
Sbjct: 181 DDYIVDGKINQNDSAAILYSSGTTG 205

[Close]

BLAST of Lag0024605.1 vs. ExPASy Swiss-Prot
Match: Q84P23 (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana OX=3702 GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKL--PRLPLGTVLIASSEFLSMMTEINRFD 83
           ANP GS+S++SHQV   + VIAFA S    KL    LPLGTVL+ S+EFLS    +NR D
Sbjct: 134 ANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSW---LNRSD 193

Query: 84  GSNDGFLNGKIDQSDSAAILYSSGTTG 109
            S+      +++QSD AAIL+SSGTTG
Sbjct: 194 SSSVNPFQVQVNQSDPAAILFSSGTTG 217

[Close]

BLAST of Lag0024605.1 vs. ExPASy Swiss-Prot
Match: Q7F1X5 (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  +  + +HQV   + V+AFA   +A+KLP   +  V+I S E+  +     R   +
Sbjct: 129 ANPVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAA 188

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
                   + QSD+AA+LYSSGTTG
Sbjct: 189 PAAV---AVKQSDTAAVLYSSGTTG 209

[Close]

BLAST of Lag0024605.1 vs. ExPASy Swiss-Prot
Match: Q69RG7 (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  + +++S  V      +AFA+SS A+KLP      VL+ S  F S++ +  +  G 
Sbjct: 134 ANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLLMDCGQAQG- 193

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
            +      + QS++AAI YSSGTTG
Sbjct: 194 QEPLPVVVVRQSETAAIQYSSGTTG 217

The following BLAST results are available for this feature:

BLAST of Lag0024605.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055317.1	8.1e-22	70.59	4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016899602.1	8.1e-22	70.59	PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo] >TYJ99242.1 ...	[more]
XP_016899601.1	8.1e-22	70.59	PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Cucumis melo]	[more]
ADN33954.1	8.1e-22	70.59	4-coumarate-CoA ligase [Cucumis melo subsp. melo]	[more]
XP_038894374.1	1.5e-20	67.06	4-coumarate--CoA ligase-like 9 [Benincasa hispida]	[more]

BLAST of Lag0024605.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84P23	2.4e-13	54.02	4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana OX=3702 GN=4CLL9 PE=1 SV=...	[more]
Q7F1X5	5.5e-05	37.65	4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL5...	[more]
Q69RG7	2.7e-04	37.65	4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL7...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042099	ANL, N-terminal domain	GENE3D	3.40.50.12780		coord: 10..108 e-value: 1.1E-6 score: 29.4
None	No IPR available	PANTHER	PTHR24096:SF362	4-COUMARATE--COA LIGASE-LIKE 9	coord: 24..108
None	No IPR available	PANTHER	PTHR24096	LONG-CHAIN-FATTY-ACID--COA LIGASE	coord: 24..108
None	No IPR available	SUPERFAMILY	56801	Acetyl-CoA synthetase-like	coord: 24..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0024605	Lag0024605	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0024605.1.exon1	Lag0024605.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0024605.1	cds.Lag0024605.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0024605.1	Lag0024605.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016405	CoA-ligase activity