Lag0024605 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024605
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description4-coumarate--CoA ligase-like 9
Locationchr10: 4323838 .. 4324164 (-)
RNA-Seq ExpressionLag0024605
SyntenyLag0024605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

mRNA sequence

ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

Coding sequence (CDS)

ATGAAAGTATATATAGTTTCGCAATTCAGAAAGTGGGCAGCTTTTAGTAATTGTACTCCCAACCCCTCAGCTAATCCCACTGGTTCTCAATCGGATATTTCTCATCAGGTTCGACCCTGTAAACTGGTCATTGCCTTCGCTATGTCCTCAATGGCGTCCAAGCTCCCGAGGCTTCCACTCGGTACCGTCCTGATTGCTTCGTCTGAGTTTCTCTCTATGATGACCGAAATCAATCGATTTGATGGAAGCAATGATGGTTTTCTCAATGGCAAAATCGATCAATCCGACTCGGCGGCGATTTTGTACTCGTCTGGTACTACAGGGTGA

Protein sequence

MKVYIVSQFRKWAAFSNCTPNPSANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGSNDGFLNGKIDQSDSAAILYSSGTTG
Homology
BLAST of Lag0024605 vs. NCBI nr
Match: KAA0055317.1 (4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

BLAST of Lag0024605 vs. NCBI nr
Match: XP_016899602.1 (PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo] >TYJ99242.1 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

BLAST of Lag0024605 vs. NCBI nr
Match: XP_016899601.1 (PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

BLAST of Lag0024605 vs. NCBI nr
Match: ADN33954.1 (4-coumarate-CoA ligase [Cucumis melo subsp. melo])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQV  CK VIAFA+SS ASK+PRLPLGTVLI S EFLS+M E NR +G 
Sbjct: 121 ANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGV 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           NDG  + KI+Q+DSAAILYSSGTTG
Sbjct: 181 NDGIFDLKINQNDSAAILYSSGTTG 205

BLAST of Lag0024605 vs. NCBI nr
Match: XP_038894374.1 (4-coumarate--CoA ligase-like 9 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  S+S+I+HQ+  CK VIAFA SS ASK+PRL  GTVLI S EFLS+MTE +R DG 
Sbjct: 121 ANPISSESEIAHQINLCKPVIAFATSSTASKIPRLQFGTVLIDSPEFLSLMTESSRSDGE 180

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
           +D  ++GKI+Q+DSAAILYSSGTTG
Sbjct: 181 DDYIVDGKINQNDSAAILYSSGTTG 205

BLAST of Lag0024605 vs. ExPASy Swiss-Prot
Match: Q84P23 (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana OX=3702 GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKL--PRLPLGTVLIASSEFLSMMTEINRFD 83
           ANP GS+S++SHQV   + VIAFA S    KL    LPLGTVL+ S+EFLS    +NR D
Sbjct: 134 ANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSW---LNRSD 193

Query: 84  GSNDGFLNGKIDQSDSAAILYSSGTTG 109
            S+      +++QSD AAIL+SSGTTG
Sbjct: 194 SSSVNPFQVQVNQSDPAAILFSSGTTG 217

BLAST of Lag0024605 vs. ExPASy Swiss-Prot
Match: Q7F1X5 (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  +  + +HQV   + V+AFA   +A+KLP   +  V+I S E+  +     R   +
Sbjct: 129 ANPVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAA 188

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
                   + QSD+AA+LYSSGTTG
Sbjct: 189 PAAV---AVKQSDTAAVLYSSGTTG 209

BLAST of Lag0024605 vs. ExPASy Swiss-Prot
Match: Q69RG7 (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 24  ANPTGSQSDISHQVRPCKLVIAFAMSSMASKLPRLPLGTVLIASSEFLSMMTEINRFDGS 83
           ANP  + +++S  V      +AFA+SS A+KLP      VL+ S  F S++ +  +  G 
Sbjct: 134 ANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLLMDCGQAQG- 193

Query: 84  NDGFLNGKIDQSDSAAILYSSGTTG 109
            +      + QS++AAI YSSGTTG
Sbjct: 194 QEPLPVVVVRQSETAAIQYSSGTTG 217

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055317.18.1e-2270.594-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo var. makuwa][more]
XP_016899602.18.1e-2270.59PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X2 [Cucumis melo] >TYJ99242.1 ... [more]
XP_016899601.18.1e-2270.59PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Cucumis melo][more]
ADN33954.18.1e-2270.594-coumarate-CoA ligase [Cucumis melo subsp. melo][more]
XP_038894374.11.5e-2067.064-coumarate--CoA ligase-like 9 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q84P232.4e-1354.024-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana OX=3702 GN=4CLL9 PE=1 SV=... [more]
Q7F1X55.5e-0537.654-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL5... [more]
Q69RG72.7e-0437.654-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL7... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042099ANL, N-terminal domainGENE3D3.40.50.12780coord: 10..108
e-value: 1.1E-6
score: 29.4
NoneNo IPR availablePANTHERPTHR24096:SF3624-COUMARATE--COA LIGASE-LIKE 9coord: 24..108
NoneNo IPR availablePANTHERPTHR24096LONG-CHAIN-FATTY-ACID--COA LIGASEcoord: 24..108
NoneNo IPR availableSUPERFAMILY56801Acetyl-CoA synthetase-likecoord: 24..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024605.1Lag0024605.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016405 CoA-ligase activity