Lag0015500.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015500.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr12: 14460830 .. 14466561 (+)
Sequence length	930
RNA-Seq Expression	Lag0015500.1
Synteny	Lag0015500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTCCCAAATGTTTTCGGGAATGGGAAGAGGTGTGTAAAGTCCTGTATTTTGACCATGTCCTTTAAAACTCTGGCAAGTGTAACATCGTGCTACGAAATTGGTGACATCCCTCTTTAATTGCGGCCAAAAATATCTGGTCTCTAGGATTTGTAGTGTCTTGTCTCGTCCAAGATGTCCGGCTAAATCTCCAGCATGAGCTTCTCGAATGAGCACTTCCCTTAAGGACGAATGTGGAATGCATAAGACATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTATCTATTTTTCTTTCAGCCTCTTGGTATTACTTCTTTTCTTAAGTTTTGATTTTGAAAACATGATCTTTGAAATTCTTCTTTTCAGTTGCAATTTTCTCAAAATTTTCATTCTATATTTGCAATATTCATCAACCAAGTAATTAGTTTTGATTTCTTTATGTGCTAAAGTTATTTTTCATTCCATCAGTTTAGCTCGTCAGTGTGCACAACTGTGGTTGAAAACTCGAGAATCCCTAGGACATCCTCTTGGTGTTGTTTCTGATCCTGTTGATCTTGTATGTCCTAAAGAACTTCTGGACGCAGCCATCAAAAAGGTTAATATTCATATGCTGGTGATTTAGTTCATTATCATTATCGTTGATAACACAGCTACATATTTTCAAATTTTATCCGGGTGGGTTTTTTTTCTTTGTTTTTTTTTTATTATTATTTTTTTAAAATGTGTGAGGTTTGTTCGCATAGGTTAGGATTAGACTTGTTTTATGTTCAAGAAGCCTTTTGCTACCCTTCTAATTGCTGTATTTATCTTTATAGGTGTTTGTTTCTTTTGAACATCTGTCATATCTTTTCATTTTATCAATGAGAAGTTCATATCTTTTTTTTTTTTTAATAAAAAAACACTGATGTGGCTTGGGGAAAAGTTAATTTCCTATCTTTCCTTTCAGGATCTAAATCTAGATATTTCTATAGACGAGATTGCAACCAACCGTGTGAAACTGAACTTGTAAGATTAAATATGGATAATTCCTGATTGAAAAGTTGTTTGTTAAAAAAAAAAAGCTTTTACATAGTCATCCATTTCAATTTGGCCACTGTTATCAAACTAAGCTGCTCAATTTTCCGTCCATCATGTTTTGATTATATGTTTTACAATTTCTAATGTACTAGTTATTATTTCCTGTACATTTTACTTTTAACAAGATATCATCTCTTATATGTGACAGGTGCATGAAGATGTGAGGTGGTTTGTTCTTGAAATTGGAACTGAAGAAATACCACCGAAAGATGTTGTGGATGCAAGCCAACAAGTATGAATTAATTATTTATTATTTGGTTTCTTTTTTGAAACATGAAAAGATACAAAAGCAAGAGAGAGACAAATATCGTAGCAGATTATAGAATTCCTGTAGTCCCTGAAGATTACACAAAACCTTCCTCATAGGTAGCAATGGAAACATAAGAATAATCACACAAGAGAGGGCGAGAGTGCACCAAAAGGATTCTAACCAAATCTTCCGTAGCATTGCCTTAACCACGTTATTCCAGAGTCTTTTCTTTCTTTTCGAGGGCATTCCACTTAGAAGTTGCTGAATATTTCTTGGAGCAGAGTCAGCTAAACACCAATTGATGTTAAATTCTTTGAACAACTTATGCTAGCTGCTAGGATAGACCCTTTAATTGAAGAAGGATTGGATGGCAGTTTGTAAATAGTTTTGGCACATAATACACCTACGCAGGGAGAGATAACTCAAACATTTCATGTCTTGAATATTACTAACCTGATCCTGATGTACGTTGGTTCTATTTCTAAATCCACCTACGCAGAGAGAGATAACTCAAAGGTTTCCTGTCTTGAATATCATCAACCTGATGAAGGATGCAGACTAACTCTTCAACGAACTTCTGAATCATAAACTACTTTATTTGTTTGAACTTTAAAATAGTTAGGAAATTCCTTTACTTTCATTAAAAAATTTTAAAATAATTTTAGTGAAGCAGAGTAGAAAATAAGTTAGGCAAATTATTATAATTTCATCATTAAATATCTATTAAAAAAATCATATATATGCATATTTATTTATTTATTTATTTAAATTTTAAGATTTTGAAAATAGTTATTGAAGGTAAATGTCTTTCTAGATATTTAATTATTTTTAGTTATAACTCTATTTCCATTTTTTTTTTAAAAAAATTAATTTCATCCGGTAAAGGACCAAAATAGTTTAAAGGTAACATTCCCATTCACATCTAATTGCATGAGATAATTTTTGAAACTTTCCTGCTTATTGTAGGGGAAGTAAAATAACTTCTTTACTTATTAAATAGGGTGCGGTTTGAAAGGGTTGTTCTATTGATTATGTTTTTTGAGGCCGTGAGTTCAATCTTATCCGTTTCTTTTTGCTGTTACAGGAGGTCTAGTTGCTTCTTGTTTGTTTTGAACTTTTAGTTTTGAGATCAATTAAGATCATTGTTTTGGTTCATTTTTGCTTTGAAGTTCGTGGAAGCTCCATATTTGTTTGGGACAGTTTTGTGGTTGGTTTGGTTTCAGTTCAGGATACGTCTTGTTTCAATTCATTATATTAGAATCTTCAAACTTCATTATGAGAATTTTGGTCGGATCGTAATCAATGGATCTTCCATAGCAAGTCTCTTTCATGGCCCCTTTGGTTTGAATCAGCTCATCTAAAGACCGTTTCTTGAAGTTCTCTCTCAAAGTTTTTATTGTCTTCTCATCACAGGGCTCTCATCTGAATCATCTGAATTGAAATGCTTGCATTTATCCTTTGTTATTTATCTATTTATTTTTCGGTCCTTATGCTTTTATTGTTTCTCTTTCATTTTCACTCCCTCGTCGAGTTTGTATCCTTTGAGCAGTAGTCTCTTTTCATTTCATCAATGAAAAGTCTTAAATTTAGGAGAATAATTTTGTTTCTTATTCCAATATGTGCAACCTAGGTCTTCTTATATAGGAGAAAGACCCACTACAATATAAGGAAAAAATAAAGACAATAATGACAAAATATTGACAAATAATATATACAATTGTAAATATTAGAAATTCCAACAAAAAGTTTCGCTTCTTGTTAAAAAAAAAAAAAAAAGGTGCTGCATGGTTCTATTATTAGGACAATTTGAGAAGGGACGGTTAGAAAGTTATAAAGGAAAGGTAATATTTACTTAGGAAAGGAAAAGAAAATCTTCATCTTAAGAAGCAAACTCAAGGAGCTTTCTCGCCAGTATTACTTTTGTTTCATGAAAATGCAGTAGTGGAGAATGATTGAGAACCCAAGCCTTTAGCAGAATTTCCGACAATATTATACTAATGTCCGCAATACATATATACATCTATACCCTGAAGGACCAGAAAAATGTAGACTAAAGACGATAAACTGACACATTTATCTACTTTTTTGATGGAAAAAGTATATAGTAACTTAACATCTGGGAATGAGATACCATGCTATGTCATCATCCCTCTCGATTTTTGAAAACCCTAAACAGTTGAATAATCAGACCTACTTGGCACCATTGCTTGCAAATTGAAGAGAATTTACTCTTTAAGTCAAAGTGTCAAACCAGATGCCTATATTTTGTTATTTCTATCCACTATACCAAACCCCGTATTTTATTTCTCTTGGCATTTTCTTCATATTCATATCTTCCTTTTTGACTGGATCATATTCATACCATTAGGATTTTACAGTCTATATTTTATTATTGCTAGAGTGGTTGCACTTGAATTGCGTTATGGCTATTTCCTTTTCCTTCTTTAATAGCTTAATTCTCCAGAAAGTATTCTTATTCGTATTTTTGTCTTCAGGGAAATAACTATCATTACTATAATGTTGCTGTCAACAAGCATTATTTTATTTCTCTGCTAGTTGATATTGACTATGCTTGACTTTTTATTGCAGCTCAAAACATATATGCTGCAGTTACTTGAAAAGCATAGGCTAAGCCATGGTAATGTGCAAGCTTTTGGCACACCTCGCAGGCTAGTGGTATAGCAATTACTTCACGCCCTTTTAGTATGTTGACAAATGCTTGATGAATTTTTGTTAATATTGAGAAGGGGTTATTTTGTAGATTGCTTTTGTAACCAAAATTCATTTGGCTGGGTTAAAACTATGGTGGCCGACAGCTTGTCTAGGTGCCTAGAAATGAGAAGAGGTCTTAATCTATTTTTCCTATTAGAAGGGATCCAAAATGCTTATTGAAATACGTTCTCTTTTTCTGTGTGCTTGATTTGAACTTGATCTAACCTACCACAGGGACGAGGAAGGATTAGAATTATCTTTAAACAGCATCTAGTTGATTTCTTTAGTTGGGGAGTTTCTTTGGCTTGTGGTTAGTTTGTTGTTTTGGAGTTTTTGGTTAGTTTGCTGTTTTGGTGAGCTTTTAGTTGGGTTTTTTTTTCCTTCCTTTTTCTTTCGGTGGTTGCTGTTTTGGCCTTTCTTTTTTGGTTTACTGATTTTTTTCTCCCTTTAGAAGGTTGTTTCCCTGCAGTTTTTGTATCTTTTCATCTATTAATGAAATGTTTGAAATTATAATGGACCTCATAGTTATCCTTTCCGTTAGCAAGTAGTCCCCTGGAACTTCTAAATGCAGACCACTGCTTCTCTAGAAAAGAAAAATATCTCTAATCTAAACTCTCAAGGTACATTATGTCAATAGGAAACACTTCGAGAGTGTTGGAATTTCTGATTTTTACAATTGTGTAAATATTATTTGTCAATATTTAGTCATTATTGTCTTTATTCTTTCCTTATATTGTAGTGGGTCTTTCTCCTATATAAGAAGACCTAGGTTGCACATATTTGAATAACAAAGAATTATTCTCCTAAATTAAAGATGGTATTAGAGCAAGGTTAAACCCAAGCTGTCCCTAAAACCATAAAAACCCTAGCCACCATACTTTTTTGAAACCCTATCCGCCACTGTCGTCGGAACTCTAGCTGCCATTCTTGCTTGGTGCATCCTACTTCTGGCATCGGTGGTCTTGTTTTTCCTTGACCCAAACTTTTCCAGTAAAGTACCCAGACATTCGCGATTCACCTAGGTCAGTTCGCGCTCGTCACTGCAACTCACCTTGGCAATTCGCGATTCTCAGGTTTTTTCGTTTGCAAACAAGTGGTCCTTTGTTTGACGACATCAAAGCTGCTCGAACCTTCTGCTATTTCACAGAATCACCTTGCAAGAAGGGGCCGGTTCGGTCAACTTGAGACCCTCCCGCTATGCTCATGCCCAAAAGATGGAGATTGAGAAACTGATTGCGGAAATGCTTGAAGTTGGTATTATACGACCTAGTGTCAGCCCCTACTCGAGTCTCGTCCTCCTAATCAAGAAGAAAGACGGCAGTTGGAGGTTCTGCGTTGATTACAGGGCTCTTAATAATGTGACGGTCCCTGAAAAATTCCCGATCCCTGTGGTCGAAGAACTATTGGATGAACTTCACGGCTCAACGATTTACTCCAAAATCGACCTTAAGTCCAGTTACGACCAAATCCGGGTTCACAGAGAGGACATTACGAAAACGGCTTTCCGCATTCATGAGGGGCACTATGAATTTCCTGTGATGCGATTCGGCCTCACTAACGCTCCGACCACGTTCCAACCGTTGATGAATCGGATATTCCGACATCTCCTTTGA

mRNA sequence

ATGGTCTTCCCAAATGTTTTCGGGAATGGGAAGAGTTTAGCTCGTCAGTGTGCACAACTGTGGTTGAAAACTCGAGAATCCCTAGGACATCCTCTTGGTGTTGTTTCTGATCCTGTTGATCTTGTATGTCCTAAAGAACTTCTGGACGCAGCCATCAAAAAGGTGCATGAAGATGTGAGGTGGTTTGTTCTTGAAATTGGAACTGAAGAAATACCACCGAAAGATGTTGTGGATGCAAGCCAACAACTCAAAACATATATGCTGCAGTTACTTGAAAAGCATAGGCTAAGCCATGGTAATGTGCAAGCTTTTGGCACACCTCGCAGGCTAGTGACCACTGCTTCTCTAGAAAAGAAAAATATCTCTAATCTAAACTCTCAAGTAAAGTACCCAGACATTCGCGATTCACCTAGGTCAGTTCGCGCTCGTCACTGCAACTCACCTTGGCAATTCGCGATTCTCAGAATCACCTTGCAAGAAGGGGCCGGTTCGGTCAACTTGAGACCCTCCCGCTATGCTCATGCCCAAAAGATGGAGATTGAGAAACTGATTGCGGAAATGCTTGAAGTTGGTATTATACGACCTAGTGTCAGCCCCTACTCGAGTCTCGTCCTCCTAATCAAGAAGAAAGACGGCAGTTGGAGGTTCTGCGTTGATTACAGGGCTCTTAATAATGTGACGGTCCCTGAAAAATTCCCGATCCCTGTGGTCGAAGAACTATTGGATGAACTTCACGGCTCAACGATTTACTCCAAAATCGACCTTAAGTCCAGTTACGACCAAATCCGGGTTCACAGAGAGGACATTACGAAAACGGCTTTCCGCATTCATGAGGGGCACTATGAATTTCCTGTGATGCGATTCGGCCTCACTAACGCTCCGACCACGTTCCAACCGTTGATGAATCGGATATTCCGACATCTCCTTTGA

Coding sequence (CDS)

ATGGTCTTCCCAAATGTTTTCGGGAATGGGAAGAGTTTAGCTCGTCAGTGTGCACAACTGTGGTTGAAAACTCGAGAATCCCTAGGACATCCTCTTGGTGTTGTTTCTGATCCTGTTGATCTTGTATGTCCTAAAGAACTTCTGGACGCAGCCATCAAAAAGGTGCATGAAGATGTGAGGTGGTTTGTTCTTGAAATTGGAACTGAAGAAATACCACCGAAAGATGTTGTGGATGCAAGCCAACAACTCAAAACATATATGCTGCAGTTACTTGAAAAGCATAGGCTAAGCCATGGTAATGTGCAAGCTTTTGGCACACCTCGCAGGCTAGTGACCACTGCTTCTCTAGAAAAGAAAAATATCTCTAATCTAAACTCTCAAGTAAAGTACCCAGACATTCGCGATTCACCTAGGTCAGTTCGCGCTCGTCACTGCAACTCACCTTGGCAATTCGCGATTCTCAGAATCACCTTGCAAGAAGGGGCCGGTTCGGTCAACTTGAGACCCTCCCGCTATGCTCATGCCCAAAAGATGGAGATTGAGAAACTGATTGCGGAAATGCTTGAAGTTGGTATTATACGACCTAGTGTCAGCCCCTACTCGAGTCTCGTCCTCCTAATCAAGAAGAAAGACGGCAGTTGGAGGTTCTGCGTTGATTACAGGGCTCTTAATAATGTGACGGTCCCTGAAAAATTCCCGATCCCTGTGGTCGAAGAACTATTGGATGAACTTCACGGCTCAACGATTTACTCCAAAATCGACCTTAAGTCCAGTTACGACCAAATCCGGGTTCACAGAGAGGACATTACGAAAACGGCTTTCCGCATTCATGAGGGGCACTATGAATTTCCTGTGATGCGATTCGGCCTCACTAACGCTCCGACCACGTTCCAACCGTTGATGAATCGGATATTCCGACATCTCCTTTGA

Protein sequence

MVFPNVFGNGKSLARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRITLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRFCVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRIHEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL

Homology

[Close]

BLAST of Lag0015500.1 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. NCBI nr
Match: TYK10423.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. NCBI nr
Match: TYK23724.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. NCBI nr
Match: TYK26407.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. NCBI nr
Match: KAA0041253.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 4.8e-59
Identity = 122/209 (58.37%), Postives = 152/209 (72.73%), Query Frame = 0


Query: 110 LVTTASLEKKNISNLNSQVKYPDIRDSPRS--------VRARHCNSPWQFAI-LRITLQE 169
           LV   +LEK+++ +  +  ++ +I +   +        V  R    P Q  I   I L++
Sbjct: 13  LVECRALEKEDMEDREADTQFTEIEEGRMTAIISKFSDVFERPNRLPPQRGIEHHIYLKQ 72

Query: 170 GAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRFCVDY 229
           GA  VN+RP RYAH QK E+E+L+ EML  GIIRPS SPYSS VLL++KKDGSWRFCVDY
Sbjct: 73  GADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDY 132

Query: 230 RALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRIHEGH 289
           RALNNVTVP+KFPIPVVEEL DEL+G+ ++SKIDLK+ Y QIR+H EDI KT FR HEGH
Sbjct: 133 RALNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTTFRTHEGH 192

Query: 290 YEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           YEF VM FGLTNAP+TFQ LMN++F+  L
Sbjct: 193 YEFMVMPFGLTNAPSTFQALMNQVFKRFL 221

[Close]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot
Match: Q8L785 (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana OX=3702 GN=EDD1 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-33
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 7   FGNGKSLARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEI 66
           FG  +SLARQCAQLWL TRESLGHPLGV S+PV  VC +  L+   +KV ED R F++EI
Sbjct: 331 FGRMRSLARQCAQLWLATRESLGHPLGVASEPVPPVCHRAALEKVAEKVSEDPRSFIIEI 390

Query: 67  GTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLV 112
           GTEE+PP+DV++AS+QL+  +L+LLE  RL HG V+AFGTPRRLV
Sbjct: 391 GTEEMPPQDVINASEQLRVLVLELLENQRLRHGAVKAFGTPRRLV 435

[Close]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 130.2 bits (326), Expect = 4.1e-29
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 156 ITLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWR 215
           I ++ GA    L+P       + EI K++ ++L+   I PS SP SS V+L+ KKDG++R
Sbjct: 588 IEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFR 647

Query: 216 FCVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFR 275
            CVDYR LN  T+ + FP+P ++ LL  +  + I++ +DL S Y QI +  +D  KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 276 IHEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHL 309
              G YE+ VM FGL NAP+TF   M   FR L
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL 740

[Close]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 4.1e-29
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 156 ITLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWR 215
           I ++ GA    L+P       + EI K++ ++L+   I PS SP SS V+L+ KKDG++R
Sbjct: 614 IEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFR 673

Query: 216 FCVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFR 275
            CVDYR LN  T+ + FP+P ++ LL  +  + I++ +DL S Y QI +  +D  KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 276 IHEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHL 309
              G YE+ VM FGL NAP+TF   M   FR L
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL 766

[Close]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-26
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 173 AHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKD-----GSWRFCVDYRALNNVT 232
           A   ++E+E  + EML  G+IR S SPY+S   ++ KK        +R  +DYR LN +T
Sbjct: 215 AQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEIT 274

Query: 233 VPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRIHEGHYEFPVMR 292
           +P+++PIP ++E+L +L     ++ IDL   + QI +  E I+KTAF    GHYE+  M 
Sbjct: 275 IPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMP 334

Query: 293 FGLTNAPTTFQPLMNRIFRHLL 310
           FGL NAP TFQ  MN I R LL
Sbjct: 335 FGLRNAPATFQRCMNNILRPLL 356

[Close]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-26
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 172 YAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLI-KKKDGS----WRFCVDYRALNNV 231
           Y  A + E+E  I +ML  GIIR S SPY+S + ++ KK+D S    +R  +DYR LN +
Sbjct: 215 YPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEI 274

Query: 232 TVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRIHEGHYEFPVM 291
           TV ++ PIP ++E+L +L     ++ IDL   + QI +  E ++KTAF    GHYE+  M
Sbjct: 275 TVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRM 334

Query: 292 RFGLTNAPTTFQPLMNRIFRHLL 310
            FGL NAP TFQ  MN I R LL
Sbjct: 335 PFGLKNAPATFQRCMNDILRPLL 357

[Close]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL
Match: A0A5D3CEX8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00690 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL
Match: A0A5D3DRT3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00710 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL
Match: A0A5D3DD68 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00150 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL
Match: A0A5D3DJA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00370 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 122/213 (57.28%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 100 NVQAFGTP---RRLVTTASLEKKNISNLNSQVKYPDIRDSPRSVRARHCNSPWQFAILRI 159
           N +A G P   R LV T ++E+        Q ++ D+ + P  +       P +    RI
Sbjct: 542 NFRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGDVFEMPDGL------PPMRRIDHRI 601

Query: 160 TLQEGAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRF 219
            L+EG   +N+RP RY HAQK EIE+L+ +ML  GIIRPS SP+SS V+L+KKKDG WRF
Sbjct: 602 QLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPVILVKKKDGGWRF 661

Query: 220 CVDYRALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRI 279
           CVDYRALN  TVP+KFPIP+++ELLDEL G++I+SKIDLKS Y QIRV  EDI+KTAFR 
Sbjct: 662 CVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRT 721

Query: 280 HEGHYEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           HEGHYEF VM FGLTNAP TFQ LMN++FR  L
Sbjct: 722 HEGHYEFLVMPFGLTNAPATFQALMNQVFRPYL 748

[Close]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL
Match: A0A5A7TDM4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002330 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-59
Identity = 122/209 (58.37%), Postives = 152/209 (72.73%), Query Frame = 0


Query: 110 LVTTASLEKKNISNLNSQVKYPDIRDSPRS--------VRARHCNSPWQFAI-LRITLQE 169
           LV   +LEK+++ +  +  ++ +I +   +        V  R    P Q  I   I L++
Sbjct: 13  LVECRALEKEDMEDREADTQFTEIEEGRMTAIISKFSDVFERPNRLPPQRGIEHHIYLKQ 72

Query: 170 GAGSVNLRPSRYAHAQKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSWRFCVDY 229
           GA  VN+RP RYAH QK E+E+L+ EML  GIIRPS SPYSS VLL++KKDGSWRFCVDY
Sbjct: 73  GADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDY 132

Query: 230 RALNNVTVPEKFPIPVVEELLDELHGSTIYSKIDLKSSYDQIRVHREDITKTAFRIHEGH 289
           RALNNVTVP+KFPIPVVEEL DEL+G+ ++SKIDLK+ Y QIR+H EDI KT FR HEGH
Sbjct: 133 RALNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTTFRTHEGH 192

Query: 290 YEFPVMRFGLTNAPTTFQPLMNRIFRHLL 310
           YEF VM FGLTNAP+TFQ LMN++F+  L
Sbjct: 193 YEFMVMPFGLTNAPSTFQALMNQVFKRFL 221

[Close]

BLAST of Lag0015500.1 vs. TAIR 10
Match: AT3G48110.1 (glycine-tRNA ligases )

HSP 1 Score: 145.2 bits (365), Expect = 8.7e-35
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 7   FGNGKSLARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEI 66
           FG  +SLARQCAQLWL TRESLGHPLGV S+PV  VC +  L+   +KV ED R F++EI
Sbjct: 331 FGRMRSLARQCAQLWLATRESLGHPLGVASEPVPPVCHRAALEKVAEKVSEDPRSFIIEI 390

Query: 67  GTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLV 112
           GTEE+PP+DV++AS+QL+  +L+LLE  RL HG V+AFGTPRRLV
Sbjct: 391 GTEEMPPQDVINASEQLRVLVLELLENQRLRHGAVKAFGTPRRLV 435

[Close]

BLAST of Lag0015500.1 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 5.0e-06
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 176 QKMEIEKLIAEMLEVGIIRPSVSPYSSLVLLIKKKDGSW 215
           ++  ++  + EMLE  II+PS+SPYSS VLL++KKDG W
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Lag0015500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21209.1	3.6e-59	57.28	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10423.1	3.6e-59	57.28	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23724.1	3.6e-59	57.28	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26407.1	3.6e-59	57.28	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041253.1	4.8e-59	58.37	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0015500.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L785	1.2e-33	64.76	Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana OX=3...	[more]
Q99315	4.1e-29	42.48	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.1e-29	42.48	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	1.1e-26	42.96	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.5e-26	44.76	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Lag0015500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEX8	1.8e-59	57.28	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DRT3	1.8e-59	57.28	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DD68	1.8e-59	57.28	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJA9	1.8e-59	57.28	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TDM4	2.3e-59	58.37	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lag0015500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48110.1	8.7e-35	64.76	glycine-tRNA ligases	[more]
ATMG00850.1	5.0e-06	53.85	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 207..308 e-value: 4.4E-15 score: 55.8
IPR015944	Glycine-tRNA ligase, beta subunit	PFAM	PF02092	tRNA_synt_2f	coord: 62..131 e-value: 3.1E-12 score: 46.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 232..307 e-value: 1.2E-55 score: 190.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 155..292 e-value: 1.2E-55 score: 190.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 155..306
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 155..306
None	No IPR available	CDD	cd01647	RT_LTR	coord: 191..309 e-value: 4.80565E-58 score: 182.795
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 147..308

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0015500	Lag0015500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0015500.1.exon1	Lag0015500.1.exon1	exon
Lag0015500.1.exon2	Lag0015500.1.exon2	exon
Lag0015500.1.exon3	Lag0015500.1.exon3	exon
Lag0015500.1.exon4	Lag0015500.1.exon4	exon
Lag0015500.1.exon5	Lag0015500.1.exon5	exon
Lag0015500.1.exon6	Lag0015500.1.exon6	exon
Lag0015500.1.exon7	Lag0015500.1.exon7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0015500.1	cds.Lag0015500.1	CDS
cds.Lag0015500.1	cds.Lag0015500.1_2	CDS
cds.Lag0015500.1	cds.Lag0015500.1_3	CDS
cds.Lag0015500.1	cds.Lag0015500.1_4	CDS
cds.Lag0015500.1	cds.Lag0015500.1_5	CDS
cds.Lag0015500.1	cds.Lag0015500.1_6	CDS
cds.Lag0015500.1	cds.Lag0015500.1_7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0015500.1	Lag0015500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006426	glycyl-tRNA aminoacylation
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004820	glycine-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity