Lag0011574.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0011574.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNucleolar protein 58-like
Locationchr1: 28057216 .. 28058094 (+)
Sequence length411
RNA-Seq ExpressionLag0011574.1
SyntenyLag0011574.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGGTAGTTCAGACTGATACCCCTTTGCCGTCGACATCTGATTTTGAGAAAGAGATTACAGAAAGAGAAGAACAGGAGAAAAAGGAAGCATAGGACAAAGCGAGAGAAGAAACAAAAAGGAAAGCAGAGGAGGAAATATTGCCCGAACAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGTATATAGAGATGCTGAAAAGAGACTTTCTGTTTGAATGAGGATATGGGGATGATCTGCCACGGTTCTTGAGGATTGGAATAGTGAACCATGGTTGGGGTTAGTTCTACGCAAAGCCAGAGCTGGTCAATTCTAATGTTGTCCGTGAGTTTTATGCAAATATTGATGATCAAGAAGGATTTCAGGCTATCGTTCAAGGAGTGCCAGTGGATTGGAGCCCAGGGGCCATCAATTCTCTTTTCAACCTTCAAGACTTTTTGCACGCAGGCTTCAATGAGATGGTGGTAGCACCATCGAATGATTAGTTAAATGCGGCTGTCAGGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

mRNA sequence

ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

Coding sequence (CDS)

ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

Protein sequence

MREVPRWKQKAGRVKREDKGKGIAEASAEADDVDTGEIRLLYNHFINNLARAKEIGIEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSIDVGKIISTEIYECWRKKV
Homology
BLAST of Lag0011574.1 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 57  IEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSM 116
           IEGAQW+ S  E  +F+ + +K E   W+ F+   LL +T  S V++DR +L+++I+   
Sbjct: 139 IEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVLIYAIVTHK 198

Query: 117 SIDVGKIISTEIYECWRKK 136
           SIDVGK+IS  I    R K
Sbjct: 199 SIDVGKVISHAILRTGRNK 217

BLAST of Lag0011574.1 vs. NCBI nr
Match: EOY08849.1 (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 57  IEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSM 116
           + GAQW+ S  E  +F+ + +K E   W+ F+   LLS+T  S V++DR +L+++I+   
Sbjct: 94  VRGAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHK 153

Query: 117 SIDVGKIISTEIYECWRKK 136
           SIDVGK+IS  I    R K
Sbjct: 154 SIDVGKVISHAILHTGRTK 172

BLAST of Lag0011574.1 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 42  YNHFINNLAR------AKEIGIEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLST 101
           ++ FI N+         + + + GA+W +S     T   + L   A  W  F+K HLL T
Sbjct: 120 HSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPT 179

Query: 102 TRDSTVSRDRVLLVFSILRSMSIDVGKIISTEIYECWRKK 136
           T   TVS+DR+LL+ S+L   SI+VG++I +EI  C  +K
Sbjct: 180 THGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 219

BLAST of Lag0011574.1 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-06
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 59  GAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSI 118
           G+QW I K    + +  YLK  AN W  F++   +  +   T+S +R+LL+++IL   SI
Sbjct: 146 GSQWIIRKYGSHSCRREYLKPIANVWFYFVQYSFMPISHSYTISMERMLLLYAILTEKSI 205

Query: 119 DVGKIISTEIYECWRKK 136
           +VGKII  EI+ C +KK
Sbjct: 206 NVGKIILKEIHNCAKKK 222

BLAST of Lag0011574.1 vs. NCBI nr
Match: KAB2005540.1 (hypothetical protein ES319_D11G277400v1 [Gossypium barbadense])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 59  GAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSI 118
           G QW I K    + Q  YLKS    W  F++   +  +  ST+S  R+L +++IL   SI
Sbjct: 146 GPQWIIRKYRSHSCQREYLKSIGKVWFYFVRYSFMPISHSSTISMKRMLSLYAILTEKSI 205

Query: 119 DVGKIISTEIYECWRKK 136
           +VGKII  EI++C +KK
Sbjct: 206 NVGKIILKEIHDCAKKK 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EOY13933.11.1e-0741.77Uncharacterized protein TCM_032752 [Theobroma cacao][more]
EOY08849.11.4e-0740.51Uncharacterized protein TCM_024087 [Theobroma cacao][more]
PON35554.11.9e-0736.00hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
TYH88163.12.1e-0640.26hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum][more]
KAB2005540.12.7e-0640.26hypothetical protein ES319_D11G277400v1 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0011574Lag0011574gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0011574.1.exon1Lag0011574.1.exon1exon
Lag0011574.1.exon2Lag0011574.1.exon2exon
Lag0011574.1.exon3Lag0011574.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0011574.1cds.Lag0011574.1CDS
cds.Lag0011574.1cds.Lag0011574.1_2CDS
cds.Lag0011574.1cds.Lag0011574.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0011574.1Lag0011574.1-proteinpolypeptide